gavinsimpson/gratia issues and pull requests

#319 - simulate.gam with ocat returning unexpected values

Issue - State: open - Opened by hhp94 21 days ago - 2 comments

#318 - Extracting the coefficients of a GAM model

Issue - State: closed - Opened by onetimestats2024 26 days ago

#317 - `partial_residuals.gam()` doesn't pass `...` on to `compute_partial_residuals()`

Issue - State: closed - Opened by gavinsimpson 2 months ago - 1 comment
Labels: not a bug

#316 - Difference between `data_slice %>% fitted_values` and `draw`?

Issue - State: closed - Opened by GatesDupont 2 months ago - 3 comments

#315 - Error in `vec_rbind` in `difference_smooths()` when comparing smooths in GAM model with a factor-by interaction term

Issue - State: open - Opened by 3rd3 2 months ago - 2 comments

#314 - Add simultaneous intervals on smooths in `draw.gam()`

Issue - State: open - Opened by gavinsimpson 2 months ago

#312 - smooth_type has no return when smooth class is cpspline.smooth

Issue - State: closed - Opened by NatalieDupont 3 months ago - 1 comment

#311 - `smooth_estimates()` returns random smooths for levels on in the `by` smooth

Issue - State: open - Opened by StefanoMezzini 3 months ago - 1 comment

#310 - `draw()` fails if `parametric = TRUE` when a `bam()` has a `subset` specified and `discrete = TRUE`

Issue - State: open - Opened by StefanoMezzini 3 months ago - 2 comments

#308 - Reduce duplication of code in the various `plot_smooth()` methods

Issue - State: open - Opened by gavinsimpson 3 months ago

#307 - removing annotations below draw.gam()

Issue - State: closed - Opened by gavinsimpson 3 months ago

#305 - JOSS review: code points

Issue - State: closed - Opened by vankesteren 4 months ago - 3 comments

#304 - JOSS review: paper comments

Issue - State: open - Opened by vankesteren 4 months ago - 1 comment

#303 - JOSS review: failing tests

Issue - State: open - Opened by dill 4 months ago - 2 comments

#302 - JOSS review: Community guidelines

Issue - State: open - Opened by dill 4 months ago

#301 - `derivatives()` fails for fs smooth where model contains a linear parametric term

Issue - State: closed - Opened by gavinsimpson 4 months ago

#300 - Add a `plot_predictions()` or equivalent function

Issue - State: open - Opened by gavinsimpson 4 months ago

#298 - Typo in doc

Issue - State: closed - Opened by nicholasjclark 4 months ago - 1 comment

#297 - Issue with draw() when cyclic p-splines are part of the mgcv GAM

Issue - State: closed - Opened by Zuckerbrot 4 months ago - 1 comment

#296 - Comments on JOSS paper

Issue - State: open - Opened by dill 4 months ago - 7 comments

#295 - Behaviour of draw() with a model offset

Issue - State: closed - Opened by DEHewitt 5 months ago - 2 comments

#293 - `derivative_samples` scale argument

Issue - State: closed - Opened by jonathonmellor 5 months ago - 5 comments

#291 - `derivative_samples()` has unnecessary argument `level`

Issue - State: closed - Opened by gavinsimpson 5 months ago

#290 - Release gratia 0.9.1

Issue - State: closed - Opened by gavinsimpson 5 months ago

#289 - `model_constant()` needs to be aware of LSS models

Issue - State: closed - Opened by gavinsimpson 6 months ago
Labels: enhancement, good first issue

#288 - `plot_smooth` method for soap films needs some tweaking

Issue - State: open - Opened by gavinsimpson 6 months ago
Labels: bug, plotting

#287 - Plot titles for `s(fac, continuous, bs = "re")` only use the first variable involved in the smooth

Issue - State: closed - Opened by gavinsimpson 6 months ago

#286 - `appraise()` and `qq_plot()` need a `seed` argument and to run the RNG-using bits with that seed

Issue - State: closed - Opened by gavinsimpson 6 months ago
Labels: enhancement, good first issue, plotting, consistency

#285 - Encountering errors with difference_smooths() - potential bug?

Issue - State: closed - Opened by AHugh8 6 months ago - 2 comments
Labels: can't reproduce

#284 - `draw` forgets order of ordered factor

Issue - State: closed - Opened by mhpob 7 months ago - 2 comments

#283 - Fixing a typo in family.

Pull Request - State: closed - Opened by muschellij2 7 months ago - 1 comment

#282 - `draw()` fails with `parametric = TRUE` if there aren't any parametric effects to actually plot

Issue - State: closed - Opened by gavinsimpson 7 months ago
Labels: bug, plotting

#281 - Possible PR: making posterior draws compatible with MCMC diagnostic packages

Issue - State: open - Opened by noamross 7 months ago

#280 - shift=TRUE not working for confint.gam()

Issue - State: closed - Opened by TIMAVID 7 months ago - 5 comments
Labels: bug

#279 - Select mvn_method when running `fitted_samples()`

Issue - State: closed - Opened by stefgehrig 7 months ago - 1 comment
Labels: bug, enhancement

#278 - Work towards bayesplot and loo integration?

Issue - State: open - Opened by nicholasjclark 7 months ago

#277 - Improve plotting code for SOS (spline-on-the-sphere) smooths

Issue - State: open - Opened by gavinsimpson 8 months ago
Labels: enhancement, plotting

#275 - Tests fail with current version of `Matrix` (1.6-5): `function 'chm_factor_ldetL2' not provided by package 'Matrix'`

Issue - State: closed - Opened by barracuda156 8 months ago - 3 comments
Labels: not a bug

#274 - Ensure continuity of gam from start of series to end of series

Issue - State: closed - Opened by markbneal 8 months ago - 1 comment

#273 - `compute_partial_residuals` is wrong if deviance residuals are not equivalent to pearson residuals?

Issue - State: closed - Opened by wStockhausen 8 months ago - 9 comments
Labels: bug, plotting

#272 - gfam support in `simulate.gam()`

Issue - State: open - Opened by gavinsimpson 8 months ago

#271 - gfam support in `smooth_samples()`

Issue - State: open - Opened by gavinsimpson 8 months ago

#270 - gfam support in `posterior_samples()`

Issue - State: open - Opened by gavinsimpson 8 months ago

#269 - gfam support in `fitted_samples()`

Issue - State: open - Opened by gavinsimpson 8 months ago

#268 - `draw()` works with gfam models

Issue - State: closed - Opened by gavinsimpson 8 months ago - 1 comment

#267 - gfam support in `appraise()`

Issue - State: open - Opened by gavinsimpson 8 months ago

#266 - `data_sim()`

Issue - State: closed - Opened by gavinsimpson 8 months ago

#265 - Support for models with `gfam()` family

Issue - State: open - Opened by gavinsimpson 8 months ago

#264 - Derivatives of the difference between two smooths

Issue - State: open - Opened by gavinsimpson 8 months ago
Labels: enhancement

#262 - difference_smooths for models with multiple by= variables

Issue - State: closed - Opened by ahsenko 8 months ago - 5 comments

#261 - prediction-based plots when using by matrices in linear functionals

Issue - State: closed - Opened by nicholasjclark 8 months ago - 3 comments

#260 - draw fails with ti(...) terms from smooth_estimates(...)

Issue - State: closed - Opened by wStockhausen 8 months ago - 2 comments
Labels: bug

#259 - Make `draw.basis()` work for quadvariate smooths

Issue - State: open - Opened by gavinsimpson 8 months ago
Labels: enhancement

#258 - Make `draw.basis()` work for trivariate smooths

Issue - State: open - Opened by gavinsimpson 8 months ago
Labels: enhancement

#257 - Implement `draw_4d_difference()` for `difference_smooths()`

Issue - State: open - Opened by gavinsimpson 8 months ago
Labels: enhancement

#256 - Implement `draw_3d_difference()` for `difference_smooths()`

Issue - State: open - Opened by gavinsimpson 8 months ago

#255 - smooth_samples() would fail if supplied data when relocating data columns

Issue - State: closed - Opened by gavinsimpson 8 months ago

#254 - handle factor `by` smooths when drawing on the response scale

Issue - State: open - Opened by gavinsimpson 8 months ago

#253 - add code for specifying the scale rather than just `constant` and `fun`

Issue - State: open - Opened by gavinsimpson 8 months ago
Labels: enhancement

#252 - Show confidence interval for bivariate smooths

Issue - State: closed - Opened by gavinsimpson 8 months ago - 3 comments
Labels: enhancement, question, wontfix

#251 - Second derivative error

Issue - State: closed - Opened by samlipworth 9 months ago - 2 comments

#250 - data_slice() error about var1

Issue - State: closed - Opened by GatesDupont 10 months ago - 2 comments

#249 - draw() error when trying to plot 2d smooths with bs='sz' or 'fs'

Issue - State: closed - Opened by chrishaak 10 months ago - 8 comments

#248 - Move added columns in add_sizer() to before data columns

Issue - State: closed - Opened by gavinsimpson 11 months ago
Labels: consistency

#247 - Break everything with name changes

Issue - State: closed - Opened by gavinsimpson 11 months ago - 1 comment
Labels: enhancement, consistency

#246 - roxygen markup issue

Issue - State: closed - Opened by gavinsimpson 11 months ago
Labels: bug, cran

#245 - draw() returning error

Issue - State: closed - Opened by sealavi 11 months ago - 16 comments
Labels: not a bug

#244 - Plotting sz factor smooth deviations separately

Issue - State: open - Opened by joepiekos 11 months ago - 2 comments
Labels: enhancement

#240 - Add support for glmmTMB model fits

Issue - State: open - Opened by gavinsimpson about 1 year ago - 1 comment
Labels: enhancement, good first issue

#239 - too_far scaling

Issue - State: closed - Opened by Silviculturalist about 1 year ago - 1 comment

#238 - Function to obtain the overall penalty matrix from an mgcv object

Issue - State: open - Opened by fhui28 about 1 year ago
Labels: enhancement

#237 - Add option to expose samples from derivatives

Issue - State: closed - Opened by jonathonmellor about 1 year ago - 6 comments
Labels: enhancement

#236 - evaluate_smooth() still called by confint.gam() in gratia 0.7.3

Issue - State: closed - Opened by Theaetetos about 1 year ago - 1 comment

#235 - Partial residuals on parametric terms

Issue - State: open - Opened by mattdiebel about 1 year ago
Labels: enhancement, plotting

#234 - fitted_values does not currently work with betar family

Issue - State: closed - Opened by sambweber about 1 year ago - 1 comment

#233 - posterior_samples & co need to handle offsets correctly

Issue - State: closed - Opened by gavinsimpson over 1 year ago

#232 - Documentation for `gratia::posterior_samples()` behaviour with offsets

Issue - State: closed - Opened by gavinsimpson over 1 year ago
Labels: documentation

#230 - Documentation for `gratia::posterior_samples()` behaviour with offsets

Issue - State: closed - Opened by jonathonmellor over 1 year ago - 1 comment

#228 - partial residuals display default with draw

Issue - State: closed - Opened by bachlaw over 1 year ago - 2 comments

#227 - gratia support for other regression packages

Issue - State: open - Opened by seanhardison1 over 1 year ago - 4 comments

#226 - Add legend to draw for fs splines ?

Issue - State: closed - Opened by remip48 over 1 year ago - 1 comment

#225 - Returning more (or less) than 1 row per `summarise()` group was deprecated in dplyr 1.1.0.

Issue - State: closed - Opened by remip48 over 1 year ago - 2 comments

#224 - Continuous by smooths should set by variable to be 1 when evaluating

Issue - State: closed - Opened by gavinsimpson over 1 year ago

#223 - difference_smooths() fails on a decomposed HGAM

Issue - State: closed - Opened by gavinsimpson over 1 year ago - 1 comment

#222 - data_slice isn't handling logical variables when not specified in the slice

Issue - State: closed - Opened by gavinsimpson over 1 year ago

#221 - Error showing parametric terms in draw(parametric=T)

Issue - State: closed - Opened by dsmi313 over 1 year ago - 4 comments
Labels: bug

#220 - Handle tram models?

Issue - State: open - Opened by gavinsimpson over 1 year ago

#219 - draw.gam errors with a valid HGAM and `grouped_by = TRUE` & `parametric = TRUE`

Issue - State: closed - Opened by gavinsimpson over 1 year ago - 1 comment
Labels: bug

#218 - Handle distributional families in `fitted_values()`

Issue - State: open - Opened by gavinsimpson over 1 year ago

#217 - smooth_estimates by factor

Issue - State: closed - Opened by DHLocke over 1 year ago - 1 comment

#216 - Change derivatives to only produce `n = 100` evenly spaced values

Issue - State: closed - Opened by gavinsimpson over 1 year ago
Labels: consistency

#215 - Implement a theme system for gratia

Issue - State: open - Opened by gavinsimpson over 1 year ago
Labels: enhancement

#214 - A better model summary

Issue - State: open - Opened by noamross over 1 year ago - 6 comments

#213 - Add support for extreme value GAMs fitted by package evgam

Issue - State: open - Opened by gavinsimpson over 1 year ago
Labels: enhancement

#212 - parametric_effect with a factor variable

Issue - State: closed - Opened by fhui28 over 1 year ago - 4 comments
Labels: bug

#211 - Implement a standalone function to generate posterior draws from a fitted model

Issue - State: closed - Opened by gavinsimpson over 1 year ago
Labels: enhancement

#210 - Use geomtextpath pkg for labelled contours

Issue - State: open - Opened by gavinsimpson almost 2 years ago

#209 - Add family-related functions for the new cnorm family for the censored normal distribution

Issue - State: closed - Opened by gavinsimpson almost 2 years ago
Labels: enhancement

#208 - sz basis smooths can have n factors and the terms for the smooth can be in any order

Issue - State: closed - Opened by gavinsimpson almost 2 years ago
Labels: bug, enhancement

#207 - Change size to linewidth in the tutorial

Issue - State: closed - Opened by cmagelssen almost 2 years ago - 3 comments

GitHub / gavinsimpson/gratia issues and pull requests