Ecosyste.ms: Issues

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GitHub / gavinsimpson/gratia issues and pull requests

#317 - `partial_residuals.gam()` doesn't pass `...` on to `compute_partial_residuals()`

Issue - State: closed - Opened by gavinsimpson 20 days ago - 1 comment
Labels: not a bug

#316 - Difference between `data_slice %>% fitted_values` and `draw`?

Issue - State: closed - Opened by GatesDupont 20 days ago - 3 comments

#312 - smooth_type has no return when smooth class is cpspline.smooth

Issue - State: closed - Opened by NatalieDupont about 1 month ago - 1 comment

#307 - removing annotations below draw.gam()

Issue - State: closed - Opened by gavinsimpson about 2 months ago

#305 - JOSS review: code points

Issue - State: closed - Opened by vankesteren about 2 months ago - 3 comments

#304 - JOSS review: paper comments

Issue - State: open - Opened by vankesteren about 2 months ago - 1 comment

#303 - JOSS review: failing tests

Issue - State: open - Opened by dill 2 months ago - 2 comments

#302 - JOSS review: Community guidelines

Issue - State: open - Opened by dill 2 months ago

#298 - Typo in doc

Issue - State: closed - Opened by nicholasjclark 2 months ago - 1 comment

#297 - Issue with draw() when cyclic p-splines are part of the mgcv GAM

Issue - State: closed - Opened by Zuckerbrot 3 months ago - 1 comment

#296 - Comments on JOSS paper

Issue - State: open - Opened by dill 3 months ago - 7 comments

#295 - Behaviour of draw() with a model offset

Issue - State: closed - Opened by DEHewitt 3 months ago - 2 comments

#293 - `derivative_samples` scale argument

Issue - State: closed - Opened by jonathonmellor 3 months ago - 5 comments

#290 - Release gratia 0.9.1

Issue - State: closed - Opened by gavinsimpson 4 months ago

#289 - `model_constant()` needs to be aware of LSS models

Issue - State: closed - Opened by gavinsimpson 4 months ago
Labels: enhancement, good first issue

#288 - `plot_smooth` method for soap films needs some tweaking

Issue - State: open - Opened by gavinsimpson 4 months ago
Labels: bug, plotting

#286 - `appraise()` and `qq_plot()` need a `seed` argument and to run the RNG-using bits with that seed

Issue - State: closed - Opened by gavinsimpson 5 months ago
Labels: enhancement, good first issue, plotting, consistency

#285 - Encountering errors with difference_smooths() - potential bug?

Issue - State: closed - Opened by AHugh8 5 months ago - 2 comments
Labels: can't reproduce

#284 - `draw` forgets order of ordered factor

Issue - State: closed - Opened by mhpob 5 months ago - 2 comments

#283 - Fixing a typo in family.

Pull Request - State: closed - Opened by muschellij2 5 months ago - 1 comment

#280 - shift=TRUE not working for confint.gam()

Issue - State: closed - Opened by TIMAVID 6 months ago - 5 comments
Labels: bug

#279 - Select mvn_method when running `fitted_samples()`

Issue - State: closed - Opened by stefgehrig 6 months ago - 1 comment
Labels: bug, enhancement

#278 - Work towards bayesplot and loo integration?

Issue - State: open - Opened by nicholasjclark 6 months ago

#277 - Improve plotting code for SOS (spline-on-the-sphere) smooths

Issue - State: open - Opened by gavinsimpson 6 months ago
Labels: enhancement, plotting

#274 - Ensure continuity of gam from start of series to end of series

Issue - State: closed - Opened by markbneal 6 months ago - 1 comment

#273 - `compute_partial_residuals` is wrong if deviance residuals are not equivalent to pearson residuals?

Issue - State: closed - Opened by wStockhausen 6 months ago - 2 comments
Labels: bug, plotting

#272 - gfam support in `simulate.gam()`

Issue - State: open - Opened by gavinsimpson 6 months ago

#271 - gfam support in `smooth_samples()`

Issue - State: open - Opened by gavinsimpson 6 months ago

#270 - gfam support in `posterior_samples()`

Issue - State: open - Opened by gavinsimpson 6 months ago

#269 - gfam support in `fitted_samples()`

Issue - State: open - Opened by gavinsimpson 6 months ago

#268 - `draw()` works with gfam models

Issue - State: closed - Opened by gavinsimpson 6 months ago - 1 comment

#267 - gfam support in `appraise()`

Issue - State: open - Opened by gavinsimpson 6 months ago

#266 - `data_sim()`

Issue - State: closed - Opened by gavinsimpson 6 months ago

#265 - Support for models with `gfam()` family

Issue - State: open - Opened by gavinsimpson 6 months ago

#264 - Derivatives of the difference between two smooths

Issue - State: open - Opened by gavinsimpson 6 months ago
Labels: enhancement

#262 - difference_smooths for models with multiple by= variables

Issue - State: closed - Opened by ahsenko 7 months ago - 5 comments

#261 - prediction-based plots when using by matrices in linear functionals

Issue - State: closed - Opened by nicholasjclark 7 months ago - 3 comments

#260 - draw fails with ti(...) terms from smooth_estimates(...)

Issue - State: closed - Opened by wStockhausen 7 months ago - 2 comments
Labels: bug

#259 - Make `draw.basis()` work for quadvariate smooths

Issue - State: open - Opened by gavinsimpson 7 months ago
Labels: enhancement

#258 - Make `draw.basis()` work for trivariate smooths

Issue - State: open - Opened by gavinsimpson 7 months ago
Labels: enhancement

#257 - Implement `draw_4d_difference()` for `difference_smooths()`

Issue - State: open - Opened by gavinsimpson 7 months ago
Labels: enhancement

#253 - add code for specifying the scale rather than just `constant` and `fun`

Issue - State: open - Opened by gavinsimpson 7 months ago
Labels: enhancement

#252 - Show confidence interval for bivariate smooths

Issue - State: closed - Opened by gavinsimpson 7 months ago - 3 comments
Labels: enhancement, question, wontfix

#251 - Second derivative error

Issue - State: closed - Opened by samlipworth 7 months ago - 2 comments

#250 - data_slice() error about var1

Issue - State: closed - Opened by GatesDupont 8 months ago - 2 comments

#249 - draw() error when trying to plot 2d smooths with bs='sz' or 'fs'

Issue - State: closed - Opened by chrishaak 8 months ago - 8 comments

#248 - Move added columns in add_sizer() to before data columns

Issue - State: closed - Opened by gavinsimpson 9 months ago
Labels: consistency

#247 - Break everything with name changes

Issue - State: closed - Opened by gavinsimpson 9 months ago - 1 comment
Labels: enhancement, consistency

#246 - roxygen markup issue

Issue - State: closed - Opened by gavinsimpson 9 months ago
Labels: bug, cran

#245 - draw() returning error

Issue - State: closed - Opened by sealavi 9 months ago - 16 comments
Labels: not a bug

#244 - Plotting sz factor smooth deviations separately

Issue - State: open - Opened by joepiekos 10 months ago - 2 comments
Labels: enhancement

#240 - Add support for glmmTMB model fits

Issue - State: open - Opened by gavinsimpson 11 months ago - 1 comment
Labels: enhancement, good first issue

#239 - too_far scaling

Issue - State: closed - Opened by Silviculturalist 11 months ago - 1 comment

#238 - Function to obtain the overall penalty matrix from an mgcv object

Issue - State: open - Opened by fhui28 about 1 year ago
Labels: enhancement

#237 - Add option to expose samples from derivatives

Issue - State: closed - Opened by jonathonmellor about 1 year ago - 6 comments
Labels: enhancement

#236 - evaluate_smooth() still called by confint.gam() in gratia 0.7.3

Issue - State: closed - Opened by Theaetetos about 1 year ago - 1 comment

#235 - Partial residuals on parametric terms

Issue - State: open - Opened by mattdiebel about 1 year ago
Labels: enhancement, plotting

#234 - fitted_values does not currently work with betar family

Issue - State: closed - Opened by sambweber about 1 year ago - 1 comment

#233 - posterior_samples & co need to handle offsets correctly

Issue - State: closed - Opened by gavinsimpson about 1 year ago

#232 - Documentation for `gratia::posterior_samples()` behaviour with offsets

Issue - State: closed - Opened by gavinsimpson about 1 year ago
Labels: documentation

#230 - Documentation for `gratia::posterior_samples()` behaviour with offsets

Issue - State: closed - Opened by jonathonmellor about 1 year ago - 1 comment

#228 - partial residuals display default with draw

Issue - State: closed - Opened by bachlaw about 1 year ago - 2 comments

#227 - gratia support for other regression packages

Issue - State: open - Opened by seanhardison1 over 1 year ago - 4 comments

#226 - Add legend to draw for fs splines ?

Issue - State: closed - Opened by remip48 over 1 year ago - 1 comment

#223 - difference_smooths() fails on a decomposed HGAM

Issue - State: closed - Opened by gavinsimpson over 1 year ago - 1 comment

#221 - Error showing parametric terms in draw(parametric=T)

Issue - State: closed - Opened by dsmi313 over 1 year ago - 4 comments
Labels: bug

#220 - Handle tram models?

Issue - State: open - Opened by gavinsimpson over 1 year ago

#219 - draw.gam errors with a valid HGAM and `grouped_by = TRUE` & `parametric = TRUE`

Issue - State: closed - Opened by gavinsimpson over 1 year ago - 1 comment
Labels: bug

#218 - Handle distributional families in `fitted_values()`

Issue - State: open - Opened by gavinsimpson over 1 year ago

#217 - smooth_estimates by factor

Issue - State: closed - Opened by DHLocke over 1 year ago - 1 comment

#216 - Change derivatives to only produce `n = 100` evenly spaced values

Issue - State: closed - Opened by gavinsimpson over 1 year ago
Labels: consistency

#215 - Implement a theme system for gratia

Issue - State: open - Opened by gavinsimpson over 1 year ago
Labels: enhancement

#214 - A better model summary

Issue - State: open - Opened by noamross over 1 year ago - 4 comments

#213 - Add support for extreme value GAMs fitted by package evgam

Issue - State: open - Opened by gavinsimpson over 1 year ago
Labels: enhancement

#212 - parametric_effect with a factor variable

Issue - State: closed - Opened by fhui28 over 1 year ago - 4 comments
Labels: bug

#211 - Implement a standalone function to generate posterior draws from a fitted model

Issue - State: closed - Opened by gavinsimpson over 1 year ago
Labels: enhancement

#210 - Use geomtextpath pkg for labelled contours

Issue - State: open - Opened by gavinsimpson over 1 year ago

#208 - sz basis smooths can have n factors and the terms for the smooth can be in any order

Issue - State: closed - Opened by gavinsimpson over 1 year ago
Labels: bug, enhancement

#207 - Change size to linewidth in the tutorial

Issue - State: closed - Opened by cmagelssen over 1 year ago - 3 comments

#206 - change in **dplyr** produces warning

Issue - State: closed - Opened by mikeroswell over 1 year ago - 1 comment

#205 - Size to linewidth

Issue - State: closed - Opened by cmagelssen over 1 year ago - 2 comments