Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / gamcil/cblaster issues and pull requests
#107 - error with extract_clusters
Issue -
State: open - Opened by corkdagga 21 days ago
- 1 comment
#106 - Update CITATION.cff with paper DOI
Pull Request -
State: closed - Opened by althonos 3 months ago
- 2 comments
#105 - An auxiliary script that migt help
Issue -
State: open - Opened by AhmedElsherbini 3 months ago
#104 - OSError: Unable to parse NCBI response
Issue -
State: open - Opened by GaoSpark 6 months ago
- 3 comments
#103 - clinker plot_cluster legend issue
Issue -
State: open - Opened by MarcosVoutsinos 6 months ago
#102 - Searching genomes without gene predictions
Issue -
State: open - Opened by kcamnairb 9 months ago
#101 - RuntimeError: No e-mail or NCBI API key found, please run cblaster config
Issue -
State: open - Opened by thakur855 9 months ago
#100 - creating database failure from specific genbank files
Issue -
State: open - Opened by yamn29302 10 months ago
#99 - "zsh: illegal hardware instruction" error
Issue -
State: open - Opened by andtrum 11 months ago
- 3 comments
#98 - cblaster remote error with large clusters
Issue -
State: open - Opened by HackenDirker 12 months ago
- 1 comment
#97 - extract_clusters shifting reading frame
Issue -
State: open - Opened by McClenagoat about 1 year ago
#96 - AttributeError: 'NoneType' object has no attribute 'group'
Issue -
State: open - Opened by yye88 about 1 year ago
- 4 comments
#95 - Tree plot with 5 hits maximun per specie
Issue -
State: open - Opened by Alvarosmb about 1 year ago
#94 - Checks for mistranslations in CDS annotations and truncated regions, other minor changes
Pull Request -
State: closed - Opened by malanjary-wur about 1 year ago
#93 - makedb from gbk files
Issue -
State: open - Opened by Tim-Kirkwood over 1 year ago
#92 - TypeError: __new__() missing 8 required positional arguments
Issue -
State: open - Opened by Tim-Kirkwood over 1 year ago
#91 - cblaster didn't create .dmnd out file???????
Issue -
State: open - Opened by neelam19051 over 1 year ago
- 7 comments
#90 - TypeError: unsupported format string passed to NoneType.__format__
Issue -
State: closed - Opened by yye88 over 1 year ago
- 5 comments
#89 - makedb always results in 'sqlite3.OperationalError: database is locked'
Issue -
State: open - Opened by jjsanchezgil over 1 year ago
- 2 comments
#88 - Saving session JSON from GUI
Issue -
State: open - Opened by DougSweeney over 1 year ago
#87 - Extra logging and hmmsearch fix
Pull Request -
State: closed - Opened by malanjary-wur over 1 year ago
- 4 comments
#86 - Fix off-by-one error when using extract_clusters module
Pull Request -
State: closed - Opened by gamcil over 1 year ago
#85 - problem with context.py
Issue -
State: open - Opened by orlowskamga over 1 year ago
- 9 comments
#84 - Error during "Fetching genomic context"
Issue -
State: closed - Opened by Adwaith99 over 1 year ago
- 5 comments
#83 - extract_clusters off by a bp
Issue -
State: closed - Opened by galacmr over 1 year ago
- 10 comments
#82 - illegal hardware instruction cblaster error
Issue -
State: closed - Opened by Pacca97 almost 2 years ago
#81 - Error using makedb with gff and fa files
Issue -
State: open - Opened by Rene-Hoover almost 2 years ago
- 5 comments
#80 - not able to proceed with gne and clinker
Issue -
State: open - Opened by pksun1 about 2 years ago
- 3 comments
#79 - Issues with sqlite3 and initiating cblaster
Issue -
State: open - Opened by pksun1 about 2 years ago
- 2 comments
#78 - IndexError fix when no hits are found in a scaffold
Pull Request -
State: closed - Opened by MatthiasvdBelt about 2 years ago
#77 - Bug fixes, code enhancements, and file compression
Pull Request -
State: closed - Opened by brymerr921 about 2 years ago
- 1 comment
#76 - Local runs fail with `-bat identity -bkey max`
Issue -
State: closed - Opened by chasemc over 2 years ago
- 1 comment
#75 - Detection of Hits not perfect
Issue -
State: open - Opened by JordanVV over 2 years ago
- 1 comment
#74 - cblaster makedb: error: argument paths: Invalid path:
Issue -
State: closed - Opened by JordanVV over 2 years ago
- 1 comment
#73 - Finding 1 pfam in metagenome
Issue -
State: open - Opened by ElmavWieren over 2 years ago
#72 - Error encode in database create.
Issue -
State: open - Opened by Maiya19724 over 2 years ago
- 1 comment
#71 - extracted cluster genbank files have complete gene CDSes not located within nucleotide region
Issue -
State: open - Opened by wittetom over 2 years ago
#70 - How do I avoid RecursionError?
Issue -
State: open - Opened by robin84tk over 2 years ago
- 2 comments
#69 - How to plot output after using "hmm" mode?
Issue -
State: closed - Opened by laelbarlow over 2 years ago
- 2 comments
#68 - low sensitibity using local search mode
Issue -
State: closed - Opened by yye88 over 2 years ago
- 4 comments
#67 - database building error
Issue -
State: open - Opened by yye88 over 2 years ago
- 4 comments
#66 - No route to host
Issue -
State: open - Opened by yye88 over 2 years ago
#65 - installation looking for wheel
Issue -
State: open - Opened by meaghamblin over 2 years ago
#64 - Red and orange borders in heat map
Issue -
State: closed - Opened by aberaslop almost 3 years ago
- 2 comments
#63 - makedb issue
Issue -
State: open - Opened by azureycy almost 3 years ago
- 1 comment
#62 - error
Issue -
State: open - Opened by AKBode almost 3 years ago
- 3 comments
#61 - Extract issu
Issue -
State: open - Opened by Akllarena almost 3 years ago
#60 - ValueError: not enough values to unpack (expected 2, got 0)
Issue -
State: closed - Opened by lydia1201 almost 3 years ago
- 1 comment
#59 - Allow local profile HMMs
Pull Request -
State: closed - Opened by gamcil almost 3 years ago
#58 - The sequence length affects the final result
Issue -
State: open - Opened by zuoyang97 almost 3 years ago
#57 - No configuration folder detected, please run cblaster config
Issue -
State: closed - Opened by zuoyang97 almost 3 years ago
- 4 comments
#56 - extract -ig hits?
Issue -
State: open - Opened by mafeeney about 3 years ago
- 1 comment
#55 - extract error -de expected one argument
Issue -
State: closed - Opened by mafeeney about 3 years ago
- 2 comments
#54 - ValueError: not enough values to unpack (expected 2, got 0)
Issue -
State: closed - Opened by camilogarciabotero about 3 years ago
- 7 comments
#53 - LONG TIME
Issue -
State: closed - Opened by zuoyang97 about 3 years ago
- 9 comments
#52 - invalid Entrez search term
Issue -
State: closed - Opened by onyonderlea about 3 years ago
- 2 comments
#51 - No e-mail or NCBI API key found
Issue -
State: closed - Opened by sschrstn about 3 years ago
- 1 comment
#50 - Updated windows executable
Pull Request -
State: closed - Opened by LianaGrieken about 3 years ago
#49 - Fix tests
Pull Request -
State: closed - Opened by gamcil about 3 years ago
#48 - Save query cluster inside cblaster session
Pull Request -
State: closed - Opened by gamcil about 3 years ago
#47 - small fix for python 3.6
Pull Request -
State: closed - Opened by bramvanwersch about 3 years ago
#46 - Hmm improvements
Pull Request -
State: closed - Opened by gamcil about 3 years ago
#45 - Windows/Mac executables, -per/--percentage option
Pull Request -
State: closed - Opened by gamcil about 3 years ago
#44 - Add config module
Pull Request -
State: closed - Opened by gamcil about 3 years ago
#43 - Executable Windows & bug fixes
Pull Request -
State: closed - Opened by LianaGrieken about 3 years ago
#42 - Fix help menus
Pull Request -
State: closed - Opened by gamcil over 3 years ago
#41 - fixed windows test to include new genes that are returned by ncbi
Pull Request -
State: closed - Opened by bramvanwersch over 3 years ago
#40 - Unable to make database. genome_parser function returning empty list.
Issue -
State: closed - Opened by StefaanVerwimp over 3 years ago
- 1 comment
#39 - GUI horizontal box not large enough for text
Issue -
State: closed - Opened by StefaanVerwimp over 3 years ago
- 2 comments
#38 - change list to tuple for button color to prevent errors
Pull Request -
State: closed - Opened by gamcil over 3 years ago
#37 - parse all locations for each feature, so module works for euk genomes
Pull Request -
State: closed - Opened by gamcil over 3 years ago
#36 - Fix linux tests
Pull Request -
State: closed - Opened by bramvanwersch over 3 years ago
#35 - Test fixes
Pull Request -
State: closed - Opened by gamcil over 3 years ago
#34 - Intergaration tests
Pull Request -
State: closed - Opened by LianaGrieken over 3 years ago
- 1 comment
#33 - Minor bug fixes
Pull Request -
State: closed - Opened by bramvanwersch over 3 years ago
#32 - genome_parsers test suite + some refactoring
Pull Request -
State: closed - Opened by gamcil over 3 years ago
#31 - Classes tests
Pull Request -
State: closed - Opened by bramvanwersch over 3 years ago
#30 - Clinker int changes
Pull Request -
State: closed - Opened by gamcil over 3 years ago
#29 - Formatting
Pull Request -
State: closed - Opened by gamcil over 3 years ago
#28 - Improved integration tests
Pull Request -
State: closed - Opened by bramvanwersch over 3 years ago
#27 - Fix databases remote
Pull Request -
State: closed - Opened by gamcil over 3 years ago
#26 - remove empty rows when hiding columns
Pull Request -
State: closed - Opened by gamcil over 3 years ago
#25 - Max cluster plot change
Pull Request -
State: closed - Opened by bramvanwersch over 3 years ago
#24 - Plot fixes
Pull Request -
State: closed - Opened by bramvanwersch over 3 years ago
#23 - Bug fixes
Pull Request -
State: closed - Opened by bramvanwersch over 3 years ago
#22 - Add scaf to db
Pull Request -
State: closed - Opened by gamcil over 3 years ago
#21 - Intermediate genes addition
Pull Request -
State: closed - Opened by bramvanwersch over 3 years ago
#20 - Clinker addition
Pull Request -
State: closed - Opened by bramvanwersch over 3 years ago
#19 - do not generate linkage matrix when single result
Pull Request -
State: closed - Opened by gamcil over 3 years ago
#18 - Hmmer implementation & GUI updates
Pull Request -
State: closed - Opened by LianaGrieken over 3 years ago
#17 - Biopython sql
Pull Request -
State: closed - Opened by gamcil over 3 years ago
#16 - Does the sample size(amount) affect the results of cblaster?
Issue -
State: closed - Opened by jeep3 over 3 years ago
#15 - Add GenBank/EMBL parsers
Pull Request -
State: closed - Opened by gamcil over 3 years ago
#14 - Tb docs 241120
Pull Request -
State: closed - Opened by DrBoothTJ over 3 years ago
#13 - Genbank addition
Pull Request -
State: closed - Opened by bramvanwersch over 3 years ago
#12 - GUI search Error
Issue -
State: closed - Opened by ghost over 3 years ago
- 1 comment
#11 - GUI Crashes
Issue -
State: closed - Opened by ghost over 3 years ago
#10 - UnboundLocalError: local variable 'header' referenced before assignment
Issue -
State: closed - Opened by ghost over 3 years ago
- 7 comments
#9 - Additions of docstrings and removal of small errors
Pull Request -
State: closed - Opened by bramvanwersch over 3 years ago
- 4 comments
#8 - Empty summary files using proteins from the manual; WARNING - Found no hits for IPG 341666946
Issue -
State: closed - Opened by Dfvandenberg over 3 years ago
- 3 comments