Ecosyste.ms: Issues

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GitHub / galaxyproject/sequence_utils issues and pull requests

#30 - imp module deprecated in python 3.12

Issue - State: closed - Opened by bernt-matthias about 1 month ago

#29 - Replace TravisCI with GitHub workflows

Pull Request - State: closed - Opened by nsoranzo about 3 years ago

#28 - Prepare 1.1.5 release

Pull Request - State: closed - Opened by mvdbeek over 4 years ago - 2 comments

#27 - Fix fastqreader file handling and CI tests

Pull Request - State: closed - Opened by mvdbeek over 4 years ago

#26 - Version 1.1.4

Pull Request - State: closed - Opened by nsoranzo over 4 years ago

#25 - Simplify tox config, tests against 3.5-3.8

Pull Request - State: closed - Opened by mvdbeek over 4 years ago - 5 comments

#24 - Update refs: python3.4 to python3.5

Pull Request - State: closed - Opened by jdavcs almost 5 years ago

#23 - Fix inconsistent identifier option for fastq_groomer

Pull Request - State: closed - Opened by jdavcs over 5 years ago - 2 comments

#22 - Add fastqReader tests+test data; refactor; modify

Pull Request - State: closed - Opened by jdavcs over 5 years ago - 1 comment

#21 - SRA fastq cleanup [WIP]

Pull Request - State: closed - Opened by jdavcs over 5 years ago

#20 - Prevent StopIteration from raising RuntimeError

Pull Request - State: closed - Opened by jdavcs over 5 years ago - 3 comments

#18 - Remove deprecated ``sudo: false`` from .travis.yml

Pull Request - State: closed - Opened by nsoranzo almost 6 years ago

#17 - Running conda-installed gx-fastq-paired-end-joiner on terminal

Issue - State: closed - Opened by rasimbarutcu about 6 years ago - 5 comments

#16 - Cope with default format=None in fastaWriter

Pull Request - State: closed - Opened by peterjc over 6 years ago - 9 comments

#15 - Do not open compressed file twice in fastqNamedReader class

Pull Request - State: closed - Opened by nsoranzo about 7 years ago - 1 comment

#14 - Bug fixes

Pull Request - State: closed - Opened by nsoranzo about 7 years ago - 3 comments

#13 - Fix fastq_filter.py

Pull Request - State: closed - Opened by nsoranzo about 7 years ago - 3 comments

#12 - Adding gff_util.py ?

Issue - State: closed - Opened by mvdbeek over 7 years ago - 2 comments

#11 - Allow fastqReader and fastqWriter to work with compressed file formats.

Pull Request - State: closed - Opened by jmchilton almost 8 years ago - 12 comments

#10 - Implement static checking, tests, CI, and planemo style project structure.

Pull Request - State: closed - Opened by jmchilton almost 8 years ago - 2 comments

#9 - Move tool wrappers into here

Issue - State: closed - Opened by jmchilton almost 8 years ago - 1 comment
Labels: enhancement

#8 - Support compressed fastq throughout.

Issue - State: closed - Opened by jmchilton almost 8 years ago - 2 comments

#6 - Implement some basic tests.

Issue - State: closed - Opened by jmchilton almost 8 years ago

#5 - Implement basic static checking we have in other Python packages.

Issue - State: closed - Opened by jmchilton almost 8 years ago

#4 - Bring in PEP-8 and Python 3 fixes from the @nsoranzo in core.

Pull Request - State: closed - Opened by jmchilton almost 8 years ago - 2 comments

#3 - Publish this library to PyPI

Issue - State: closed - Opened by martenson almost 8 years ago - 4 comments

#2 - Allow fastqJoiner to accept a string of bases to use between joined pairs.

Pull Request - State: closed - Opened by blankenberg almost 9 years ago - 7 comments
Labels: enhancement

#1 - Use setuptools.

Pull Request - State: closed - Opened by davebx about 9 years ago