Ecosyste.ms: Issues

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GitHub / gagolews/genieclust issues and pull requests

#88 - fix: Improved distances_ and height documentation.

Pull Request - State: closed - Opened by mrucker 7 months ago - 1 comment

#87 - Update distance_ documentation? (I'm happy to make a pull request)

Issue - State: closed - Opened by mrucker 7 months ago - 2 comments

#86 - Update r.Rmd: typo

Pull Request - State: closed - Opened by dicorynia 9 months ago - 1 comment

#85 - ValueError: incorrect n_clusters

Issue - State: closed - Opened by chrico-bu-uab 12 months ago - 2 comments

#83 - drop nmslib?

Issue - State: open - Opened by gagolews about 1 year ago

#83 - drop nmslib?

Issue - State: open - Opened by gagolews about 1 year ago

#82 - cluster_validity submodule in python missing

Issue - State: closed - Opened by lm-jkominek about 1 year ago - 2 comments

#82 - cluster_validity submodule in python missing

Issue - State: closed - Opened by lm-jkominek about 1 year ago - 2 comments

#81 - Semi-metric dissimilarities in glcust and differing branch lengths

Issue - State: open - Opened by mike-kratz over 1 year ago - 6 comments

#80 - `ValueError: k >= n` When there k = 2 and n = 3 (exact=False)

Issue - State: closed - Opened by sergeyf over 1 year ago - 1 comment

#79 - python arm

Issue - State: open - Opened by leonardlin over 1 year ago - 9 comments

#78 - providing initial cluster counts

Issue - State: open - Opened by tritolol over 1 year ago - 2 comments
Labels: discussion

#77 - distance_threshold

Issue - State: closed - Opened by leonardlin over 1 year ago - 4 comments
Labels: discussion

#76 - mst() problem and emst_mlpack producing a Fatal error in R.

Issue - State: closed - Opened by estevezdo almost 2 years ago - 5 comments

#75 - nmslib dependency

Issue - State: closed - Opened by MichaelRFox about 2 years ago - 3 comments

#74 - De Vergottini Index

Issue - State: closed - Opened by gagolews over 2 years ago

#73 - Matlab bindings

Issue - State: open - Opened by gagolews over 3 years ago

#72 - Please consider avoiding using deprecated MLpack version

Issue - State: closed - Opened by nileshpatra over 3 years ago - 2 comments

#71 - genieclust is very sensitive to dimensionality of the input matrix

Issue - State: open - Opened by gokceneraslan almost 4 years ago - 1 comment
Labels: discussion

#70 - Fix the name of the scikit-learn PyPI package in setup.py

Pull Request - State: closed - Opened by gokceneraslan almost 4 years ago - 2 comments

#69 - Version 1.0.0

Issue - State: closed - Opened by gagolews about 4 years ago - 1 comment

#66 - solaris compile errors

Issue - State: closed - Opened by gagolews about 4 years ago

#65 - Automate the R API manual generation

Issue - State: closed - Opened by gagolews about 4 years ago - 3 comments

#64 - Use cibuildwheel

Issue - State: closed - Opened by gagolews about 4 years ago

#63 - Use sphinxcontrib-bibtex

Issue - State: closed - Opened by gagolews about 4 years ago
Labels: documentation

#62 - Jarnik's MST with query indexes kept sorted more cache-friendly?

Issue - State: closed - Opened by gagolews about 4 years ago - 1 comment

#61 - Notebook/tutorial with exact=False eval (ARI, time, space)

Issue - State: closed - Opened by gagolews about 4 years ago
Labels: high priority, documentation

#60 - Trim branches of cardinality < min_cluster_size

Issue - State: open - Opened by gagolews about 4 years ago

#59 - predict()

Issue - State: open - Opened by gagolews about 4 years ago

#57 - cutree/dendrograms: add support for noise points

Issue - State: open - Opened by gagolews about 4 years ago - 1 comment

#56 - Julia bindings

Issue - State: open - Opened by gagolews about 4 years ago

#55 - Document the C++ API with Doxygen

Issue - State: open - Opened by gagolews about 4 years ago

#54 - tools.argkmax

Issue - State: open - Opened by gagolews about 4 years ago - 1 comment
Labels: good first issue

#53 - warn if n_clusters_ != n_clusters

Issue - State: closed - Opened by gagolews about 4 years ago
Labels: high priority

#52 - Notebook/tutorial on benchmark results

Issue - State: closed - Opened by gagolews about 4 years ago
Labels: high priority, documentation

#51 - new_merge + tests

Issue - State: closed - Opened by gagolews over 4 years ago - 2 comments

#50 - Notebook/tutorial with run times/memory use

Issue - State: closed - Opened by gagolews over 4 years ago
Labels: high priority, documentation

#49 - codecov

Issue - State: closed - Opened by gagolews over 4 years ago

#48 - CRAN Task Views

Issue - State: open - Opened by gagolews over 4 years ago - 3 comments
Labels: waiting

#47 - R package genieclust: use_mlpack

Issue - State: closed - Opened by gagolews over 4 years ago - 2 comments

#46 - R package genieclust: add GIc

Issue - State: open - Opened by gagolews over 4 years ago

#45 - R package genieclust: add M, postprocess

Issue - State: closed - Opened by gagolews over 4 years ago

#44 - Relicense to AGPLv3

Issue - State: closed - Opened by gagolews over 4 years ago

#42 - exception handling in rcpp

Issue - State: closed - Opened by gagolews over 4 years ago
Labels: bug

#41 - support for non-squareform precomputed affinity

Issue - State: closed - Opened by gagolews over 4 years ago

#40 - knn_from_distance

Issue - State: closed - Opened by gagolews over 4 years ago

#39 - mst: verbose=True could show a progress bar

Issue - State: closed - Opened by gagolews over 4 years ago

#38 - Dendrograms: Correct for departures from ultrametricity

Issue - State: closed - Opened by gagolews over 4 years ago - 4 comments

#37 - set matching external cluster validity measures

Issue - State: closed - Opened by gagolews over 4 years ago

#36 - internal cluster validity measures

Issue - State: closed - Opened by gagolews over 4 years ago - 1 comment

#35 - generate pkg docs with sphinx+numpydoc

Issue - State: closed - Opened by gagolews over 4 years ago - 1 comment
Labels: high priority, documentation

#34 - standardise/normalise=True/False?

Issue - State: closed - Opened by gagolews over 4 years ago - 1 comment

#33 - compare_partitions: implement NMI

Issue - State: closed - Opened by gagolews over 4 years ago

#32 - Implement GIc

Issue - State: closed - Opened by gagolews over 4 years ago

#31 - plots.matplot()

Issue - State: open - Opened by gagolews over 4 years ago
Labels: good first issue

#29 - Add support for affinity="precomputed"

Issue - State: closed - Opened by gagolews over 4 years ago

#27 - Support parallelism via OpenMP and n_jobs param

Issue - State: closed - Opened by gagolews over 4 years ago - 4 comments

#26 - Convert notebooks to Rmd/md

Issue - State: closed - Opened by gagolews over 4 years ago
Labels: high priority, documentation

#25 - Notebook/tutorial on Comparing Partitions

Issue - State: closed - Opened by gagolews over 4 years ago - 1 comment
Labels: documentation

#24 - Notebook/tutorial on MSTs

Issue - State: closed - Opened by gagolews over 4 years ago
Labels: invalid, documentation

#23 - Notebook/tutorial on inequity measures

Issue - State: closed - Opened by gagolews over 4 years ago - 1 comment
Labels: documentation

#22 - Notebook/tutorial on plots

Issue - State: closed - Opened by gagolews over 4 years ago

#21 - Single Cython internal submodule

Issue - State: closed - Opened by gagolews over 4 years ago

#20 - DEBUG mode -- return state at different iters

Issue - State: closed - Opened by gagolews over 4 years ago
Labels: wontfix, low priority

#19 - Implement A.Cena's GC

Issue - State: closed - Opened by gagolews over 4 years ago

#18 - make DisjointSets and GiniDisjointSets serializable

Issue - State: open - Opened by gagolews over 4 years ago
Labels: low priority

#17 - plots.abline()

Issue - State: open - Opened by gagolews over 4 years ago - 1 comment

#16 - Add support for connectivity matrices

Issue - State: open - Opened by gagolews over 4 years ago - 1 comment
Labels: low priority

#15 - Allow approximate NN / EMST

Issue - State: closed - Opened by gagolews over 4 years ago - 6 comments
Labels: high priority

#13 - internal.h

Issue - State: closed - Opened by gagolews over 4 years ago
Labels: high priority

#12 - inequity.h

Issue - State: closed - Opened by gagolews over 4 years ago

#11 - compare_partitions.h

Issue - State: closed - Opened by gagolews over 4 years ago

#10 - R package genieclust

Issue - State: closed - Opened by gagolews over 4 years ago

#9 - new affinities for exact=True (for both R and Python)

Issue - State: open - Opened by gagolews over 4 years ago - 4 comments

#8 - apply_genie(), apply_gic(): return a hierarchy, not a k-partition

Issue - State: closed - Opened by gagolews over 4 years ago - 4 comments
Labels: high priority

#7 - CGiniDisjointSets: derive the formula for the Gini-index update in merge()

Issue - State: open - Opened by gagolews over 4 years ago
Labels: documentation

#6 - OWA-based linkages

Issue - State: open - Opened by gagolews over 4 years ago

#5 - Request availability through Anaconda

Issue - State: open - Opened by gagolews over 5 years ago - 2 comments
Labels: waiting

#4 - Add CI

Issue - State: closed - Opened by gagolews over 5 years ago - 1 comment

#3 - Support Windows using Appveyor

Issue - State: closed - Opened by gagolews over 5 years ago - 1 comment
Labels: high priority

#2 - setup.py has gcc-dependent openmp flags

Issue - State: closed - Opened by gagolews over 5 years ago - 2 comments

#1 - Question: would you consider a BSD-licence?

Issue - State: closed - Opened by niedakh over 6 years ago - 1 comment