Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / gagneurlab/OUTRIDER issues and pull requests
#66 - fix gha cache address
Pull Request -
State: closed - Opened by AtaJadidAhari 2 months ago
#65 - Version Bump for Bioconductor 3.18
Pull Request -
State: closed - Opened by c-mertes 2 months ago
#64 - Bioc devel
Pull Request -
State: open - Opened by c-mertes 2 months ago
- 1 comment
#63 - Fix warnings
Pull Request -
State: closed - Opened by ischeller 2 months ago
#62 - Update check-bioc version
Pull Request -
State: closed - Opened by AtaJadidAhari 3 months ago
#61 - Update inputCheckerFunctions.R
Pull Request -
State: closed - Opened by vyepez88 3 months ago
#60 - Error in findEncodingDim: deprecated pandas.DataFrame.append pandas>=2.0
Issue -
State: open - Opened by m-pauper 8 months ago
- 1 comment
#59 - PROTRIDER questions
Issue -
State: open - Opened by m-pauper 8 months ago
- 1 comment
#58 - Plot functions: coloring of aberrant status based on pvalues from gene subsets
Pull Request -
State: closed - Opened by ischeller about 1 year ago
#57 - The difference in sequencing volume and OUTRIDER
Issue -
State: open - Opened by zyyy97 over 1 year ago
- 5 comments
#56 - the input file
Issue -
State: closed - Opened by zyyy97 over 1 year ago
- 1 comment
#55 - Plot function update
Pull Request -
State: closed - Opened by ischeller over 1 year ago
#54 - Fix check notes
Pull Request -
State: closed - Opened by c-mertes over 1 year ago
#53 - Use biocthis style GHA
Pull Request -
State: closed - Opened by c-mertes over 1 year ago
#52 - explain columns for results function in detail
Pull Request -
State: closed - Opened by c-mertes over 1 year ago
- 2 comments
#51 - Fdr on subset
Pull Request -
State: closed - Opened by ischeller over 1 year ago
- 2 comments
#50 - Installation issues with R aarch64-apple-darwin20
Issue -
State: closed - Opened by ricorona over 1 year ago
- 4 comments
#49 - no cache
Pull Request -
State: closed - Opened by nickhsmith almost 2 years ago
#48 - move to ga
Pull Request -
State: closed - Opened by nickhsmith almost 2 years ago
#47 - add textshaping
Pull Request -
State: closed - Opened by nickhsmith almost 2 years ago
#46 - Move to ga
Pull Request -
State: closed - Opened by nickhsmith almost 2 years ago
#45 - move to github actions
Pull Request -
State: closed - Opened by nickhsmith almost 2 years ago
#44 - Move to ga
Pull Request -
State: closed - Opened by nickhsmith almost 2 years ago
#43 - dummy issue (please ignore)
Issue -
State: closed - Opened by nickhsmith almost 2 years ago
#42 - Errors in the codes from pdf OUTRIDER - OUTlier in RNA-Seq fInDER
Issue -
State: open - Opened by Paranchai almost 2 years ago
- 1 comment
#41 - OURIDER do not run serially
Issue -
State: closed - Opened by xuwenjian85 about 2 years ago
- 2 comments
#40 - findEncodingDims Out-of-Memory Issues
Issue -
State: open - Opened by lemdcock about 2 years ago
- 5 comments
#39 - findEncodingDim issues
Issue -
State: open - Opened by lemdcock about 2 years ago
- 5 comments
#38 - Predefined covariates
Issue -
State: open - Opened by gk1610 about 2 years ago
#37 - Update method-gridSearch.R
Pull Request -
State: closed - Opened by nickhsmith about 2 years ago
- 1 comment
#36 - findEncodingDim running issues
Issue -
State: open - Opened by runjin326 over 2 years ago
- 2 comments
#35 - Description of each column from results() function
Issue -
State: closed - Opened by iaradsouza1 almost 3 years ago
- 2 comments
#34 - Validation data set not producing values concordant with manual
Issue -
State: open - Opened by J-Lye almost 3 years ago
- 1 comment
#33 - change labels for gene statistics plot
Issue -
State: closed - Opened by c-mertes over 3 years ago
- 2 comments
#31 - Ubuntu Groovy doesn't have libmysqld-dev
Issue -
State: closed - Opened by drtconway over 3 years ago
- 1 comment
#30 - Fixing normalized counts when subsetting object
Pull Request -
State: closed - Opened by c-mertes over 3 years ago
#29 - make normalized counts independent of subsetting
Issue -
State: closed - Opened by c-mertes over 3 years ago
- 1 comment
#28 - Use S3 and S4 methods
Pull Request -
State: closed - Opened by c-mertes almost 4 years ago
#27 - make S3 methods out of the plotting functions so we can use FRASER in parallel
Issue -
State: closed - Opened by c-mertes almost 4 years ago
- 1 comment
#26 - findEncodingDim always uses all avaialble cores
Issue -
State: open - Opened by emariella almost 4 years ago
- 1 comment
#25 - BiocParallel errors: first error: L-BFGS-B needs finite values of 'fn'
Issue -
State: closed - Opened by yhoogstrate about 4 years ago
- 2 comments
#24 - how to export expression level data
Issue -
State: closed - Opened by xuwenjian85 over 4 years ago
- 2 comments
#23 - improve z-scores
Issue -
State: closed - Opened by Hoeze over 4 years ago
#22 - adapt new assay call of SummaziedExperiment
Pull Request -
State: closed - Opened by c-mertes over 4 years ago
#21 - bugfix exclusion mask
Pull Request -
State: closed - Opened by loipf over 4 years ago
- 2 comments
#20 - Missing possible outliers due to high pvalues
Issue -
State: closed - Opened by ccasar over 4 years ago
- 11 comments
#19 - Quick question about number of samples and computeGeneLengths
Issue -
State: closed - Opened by AmrR101 over 4 years ago
- 2 comments
#18 - Always hangs during autoencoding
Issue -
State: open - Opened by furbelows over 4 years ago
- 5 comments
#17 - make appveyor working
Pull Request -
State: closed - Opened by c-mertes almost 5 years ago
#16 - Merge CI fixes and code cleanup
Pull Request -
State: closed - Opened by c-mertes almost 5 years ago
#15 - Pipeline with pseudoalignment quantification tools
Issue -
State: closed - Opened by ktmf1991 almost 5 years ago
- 2 comments
#14 - Update travis pipeline
Pull Request -
State: closed - Opened by c-mertes almost 5 years ago
#13 - update travis
Pull Request -
State: closed - Opened by c-mertes about 5 years ago
#12 - spelling mistakes corrected
Pull Request -
State: closed - Opened by vyepez88 over 5 years ago
#11 - controlForConfounders uses as much memory as available on machine
Issue -
State: open - Opened by WGarrettJenkinson over 5 years ago
- 14 comments
#10 - add appveyor to build process
Pull Request -
State: closed - Opened by c-mertes over 5 years ago
#9 - OutriderDataset: allow float values/create derivative float class
Issue -
State: closed - Opened by stefanches7 almost 6 years ago
- 1 comment
#8 - OUTRIDER validation: known outlier not found
Issue -
State: closed - Opened by naumenko-sa almost 6 years ago
- 3 comments
#7 - Fit didn't converge with warning: NEW_X
Issue -
State: closed - Opened by naumenko-sa almost 6 years ago
- 9 comments
#6 - Error in fpkm(ods) : rowRanges(object) has all ranges of zero width
Issue -
State: closed - Opened by naumenko-sa almost 6 years ago
- 1 comment
#5 - Add Makevars and correct user input check
Pull Request -
State: closed - Opened by c-mertes about 6 years ago
#4 - Connection limit error while running OUTRIDER
Issue -
State: closed - Opened by pkothiyal about 6 years ago
- 3 comments
#3 - error creating OutriderDataSet
Issue -
State: closed - Opened by shukwong about 6 years ago
- 4 comments
#1 - Biorxiv
Pull Request -
State: closed - Opened by brechtmann about 6 years ago