Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / gagneurlab/OUTRIDER issues and pull requests

#66 - fix gha cache address

Pull Request - State: closed - Opened by AtaJadidAhari 2 months ago

#65 - Version Bump for Bioconductor 3.18

Pull Request - State: closed - Opened by c-mertes 2 months ago

#64 - Bioc devel

Pull Request - State: open - Opened by c-mertes 2 months ago - 1 comment

#63 - Fix warnings

Pull Request - State: closed - Opened by ischeller 2 months ago

#62 - Update check-bioc version

Pull Request - State: closed - Opened by AtaJadidAhari 3 months ago

#61 - Update inputCheckerFunctions.R

Pull Request - State: closed - Opened by vyepez88 3 months ago

#59 - PROTRIDER questions

Issue - State: open - Opened by m-pauper 8 months ago - 1 comment

#57 - The difference in sequencing volume and OUTRIDER

Issue - State: open - Opened by zyyy97 over 1 year ago - 5 comments

#56 - the input file

Issue - State: closed - Opened by zyyy97 over 1 year ago - 1 comment

#55 - Plot function update

Pull Request - State: closed - Opened by ischeller over 1 year ago

#54 - Fix check notes

Pull Request - State: closed - Opened by c-mertes over 1 year ago

#53 - Use biocthis style GHA

Pull Request - State: closed - Opened by c-mertes over 1 year ago

#52 - explain columns for results function in detail

Pull Request - State: closed - Opened by c-mertes over 1 year ago - 2 comments

#51 - Fdr on subset

Pull Request - State: closed - Opened by ischeller over 1 year ago - 2 comments

#50 - Installation issues with R aarch64-apple-darwin20

Issue - State: closed - Opened by ricorona over 1 year ago - 4 comments

#49 - no cache

Pull Request - State: closed - Opened by nickhsmith almost 2 years ago

#48 - move to ga

Pull Request - State: closed - Opened by nickhsmith almost 2 years ago

#47 - add textshaping

Pull Request - State: closed - Opened by nickhsmith almost 2 years ago

#46 - Move to ga

Pull Request - State: closed - Opened by nickhsmith almost 2 years ago

#45 - move to github actions

Pull Request - State: closed - Opened by nickhsmith almost 2 years ago

#44 - Move to ga

Pull Request - State: closed - Opened by nickhsmith almost 2 years ago

#43 - dummy issue (please ignore)

Issue - State: closed - Opened by nickhsmith almost 2 years ago

#42 - Errors in the codes from pdf OUTRIDER - OUTlier in RNA-Seq fInDER

Issue - State: open - Opened by Paranchai almost 2 years ago - 1 comment

#41 - OURIDER do not run serially

Issue - State: closed - Opened by xuwenjian85 about 2 years ago - 2 comments

#40 - findEncodingDims Out-of-Memory Issues

Issue - State: open - Opened by lemdcock about 2 years ago - 5 comments

#39 - findEncodingDim issues

Issue - State: open - Opened by lemdcock about 2 years ago - 5 comments

#38 - Predefined covariates

Issue - State: open - Opened by gk1610 about 2 years ago

#37 - Update method-gridSearch.R

Pull Request - State: closed - Opened by nickhsmith about 2 years ago - 1 comment

#36 - findEncodingDim running issues

Issue - State: open - Opened by runjin326 over 2 years ago - 2 comments

#35 - Description of each column from results() function

Issue - State: closed - Opened by iaradsouza1 almost 3 years ago - 2 comments

#34 - Validation data set not producing values concordant with manual

Issue - State: open - Opened by J-Lye almost 3 years ago - 1 comment

#33 - change labels for gene statistics plot

Issue - State: closed - Opened by c-mertes over 3 years ago - 2 comments

#31 - Ubuntu Groovy doesn't have libmysqld-dev

Issue - State: closed - Opened by drtconway over 3 years ago - 1 comment

#30 - Fixing normalized counts when subsetting object

Pull Request - State: closed - Opened by c-mertes over 3 years ago

#29 - make normalized counts independent of subsetting

Issue - State: closed - Opened by c-mertes over 3 years ago - 1 comment

#28 - Use S3 and S4 methods

Pull Request - State: closed - Opened by c-mertes almost 4 years ago

#27 - make S3 methods out of the plotting functions so we can use FRASER in parallel

Issue - State: closed - Opened by c-mertes almost 4 years ago - 1 comment

#26 - findEncodingDim always uses all avaialble cores

Issue - State: open - Opened by emariella almost 4 years ago - 1 comment

#25 - BiocParallel errors: first error: L-BFGS-B needs finite values of 'fn'

Issue - State: closed - Opened by yhoogstrate about 4 years ago - 2 comments

#24 - how to export expression level data

Issue - State: closed - Opened by xuwenjian85 over 4 years ago - 2 comments

#23 - improve z-scores

Issue - State: closed - Opened by Hoeze over 4 years ago

#22 - adapt new assay call of SummaziedExperiment

Pull Request - State: closed - Opened by c-mertes over 4 years ago

#21 - bugfix exclusion mask

Pull Request - State: closed - Opened by loipf over 4 years ago - 2 comments

#20 - Missing possible outliers due to high pvalues

Issue - State: closed - Opened by ccasar over 4 years ago - 11 comments

#19 - Quick question about number of samples and computeGeneLengths

Issue - State: closed - Opened by AmrR101 over 4 years ago - 2 comments

#18 - Always hangs during autoencoding

Issue - State: open - Opened by furbelows over 4 years ago - 5 comments

#17 - make appveyor working

Pull Request - State: closed - Opened by c-mertes almost 5 years ago

#16 - Merge CI fixes and code cleanup

Pull Request - State: closed - Opened by c-mertes almost 5 years ago

#15 - Pipeline with pseudoalignment quantification tools

Issue - State: closed - Opened by ktmf1991 almost 5 years ago - 2 comments

#14 - Update travis pipeline

Pull Request - State: closed - Opened by c-mertes almost 5 years ago

#13 - update travis

Pull Request - State: closed - Opened by c-mertes about 5 years ago

#12 - spelling mistakes corrected

Pull Request - State: closed - Opened by vyepez88 over 5 years ago

#11 - controlForConfounders uses as much memory as available on machine

Issue - State: open - Opened by WGarrettJenkinson over 5 years ago - 14 comments

#10 - add appveyor to build process

Pull Request - State: closed - Opened by c-mertes over 5 years ago

#9 - OutriderDataset: allow float values/create derivative float class

Issue - State: closed - Opened by stefanches7 almost 6 years ago - 1 comment

#8 - OUTRIDER validation: known outlier not found

Issue - State: closed - Opened by naumenko-sa almost 6 years ago - 3 comments

#7 - Fit didn't converge with warning: NEW_X

Issue - State: closed - Opened by naumenko-sa almost 6 years ago - 9 comments

#6 - Error in fpkm(ods) : rowRanges(object) has all ranges of zero width

Issue - State: closed - Opened by naumenko-sa almost 6 years ago - 1 comment

#5 - Add Makevars and correct user input check

Pull Request - State: closed - Opened by c-mertes about 6 years ago

#4 - Connection limit error while running OUTRIDER

Issue - State: closed - Opened by pkothiyal about 6 years ago - 3 comments

#3 - error creating OutriderDataSet

Issue - State: closed - Opened by shukwong about 6 years ago - 4 comments

#2 - Pr/1

Pull Request - State: closed - Opened by c-mertes about 6 years ago

#1 - Biorxiv

Pull Request - State: closed - Opened by brechtmann about 6 years ago