gadget-framework/gadget3 issues and pull requests

#82 - Error in ...names() : could not find function "...names"

Issue - State: closed - Opened by MikkoVihtakari about 2 years ago - 4 comments

#81 - g3_parameterised - both stocks and fleets in by_stock (or by_fleet)

Issue - State: closed - Opened by lentinj about 2 years ago - 3 comments

#80 - g3a_action_order constant

Issue - State: closed - Opened by lentinj about 2 years ago - 1 comment

#79 - Defaults for g3a_renewal_normalparam

Issue - State: closed - Opened by lentinj about 2 years ago - 1 comment

#78 - Update modelutils_g3_fit.R

Pull Request - State: closed - Opened by MikkoVihtakari about 2 years ago

#77 - Export g3_fit()

Issue - State: closed - Opened by MikkoVihtakari about 2 years ago - 1 comment
Labels: CRAN blocker

#76 - Area "all" not accepted by g3l_catchdistribution()

Issue - State: closed - Opened by MikkoVihtakari about 2 years ago - 5 comments

#75 - Consider not dropping to Type in subset

Issue - State: open - Opened by lentinj about 2 years ago - 2 comments

#74 - Tidy up bodges post-iterate-lists

Issue - State: closed - Opened by lentinj about 2 years ago - 1 comment

#73 - One of the likelihood components turns nll into an array

Issue - State: closed - Opened by lentinj about 2 years ago - 1 comment

#72 - Move gadgetutils::g3a_initial_abund to g3

Issue - State: closed - Opened by lentinj about 2 years ago - 1 comment

#71 - "skip years" option for g3a_time()

Issue - State: open - Opened by lentinj about 2 years ago

#70 - Default parscale scaling won't work for -1..1

Issue - State: closed - Opened by lentinj about 2 years ago - 1 comment

#69 - create param name from multiple name parts

Pull Request - State: closed - Opened by willbutler42 about 2 years ago - 4 comments

#68 - More parameterised defaults for actions

Issue - State: closed - Opened by lentinj about 2 years ago - 4 comments

#67 - Shorten final year of model

Issue - State: closed - Opened by lentinj over 2 years ago - 2 comments

#66 - g3a_predate_catchablity_hcr

Issue - State: open - Opened by lentinj over 2 years ago - 4 comments

#65 - Further projection / hindcast options

Issue - State: closed - Opened by lentinj over 2 years ago - 6 comments

#64 - ensure project_years is always a parameter

Pull Request - State: closed - Opened by willbutler42 over 2 years ago - 4 comments

#63 - "one step ahead" predictions to assess the fit to data

Issue - State: open - Opened by lentinj over 2 years ago - 5 comments

#62 - Higher-level random effect support in g3

Issue - State: closed - Opened by lentinj over 2 years ago - 6 comments

#61 - Rework parameter inclusion (turn g3_param into "real" function)

Issue - State: open - Opened by lentinj over 2 years ago - 3 comments

#60 - Uncertainty estimates using ADREPORT

Issue - State: closed - Opened by lentinj over 2 years ago - 3 comments

#59 - Support parscale

Issue - State: closed - Opened by lentinj over 2 years ago - 1 comment

#58 - Add g3_stock_param from gadgetutils

Issue - State: closed - Opened by lentinj over 2 years ago - 17 comments

#57 - Make start_year / end_year / project_years unoptimised parameters by default

Issue - State: closed - Opened by lentinj over 2 years ago - 3 comments

#56 - g3_formula

Issue - State: closed - Opened by lentinj over 2 years ago - 5 comments

#55 - abundance distribution nll's equal to zero

Issue - State: open - Opened by willbutler42 over 2 years ago - 10 comments

#54 - Likelihood functions for random effects

Issue - State: closed - Opened by lentinj almost 3 years ago

#53 - Option for reporting when stocks go NaN

Issue - State: open - Opened by lentinj almost 3 years ago - 3 comments

#52 - Performance of R output code

Issue - State: open - Opened by lentinj almost 3 years ago

#51 - R output doesn't have a Srcref

Issue - State: closed - Opened by lentinj almost 3 years ago - 1 comment
Labels: low-priority

#50 - Error in lookup[key][[1]] : subscript out of bounds

Issue - State: closed - Opened by mmrinconh almost 3 years ago - 2 comments

#49 - g3_timeareadata function doesn't work when no area is specified

Issue - State: closed - Opened by mmrinconh almost 3 years ago - 1 comment

#48 - Model helper functions

Issue - State: closed - Opened by bthe about 3 years ago - 5 comments

#47 - g3a_report_history

Issue - State: closed - Opened by lentinj about 3 years ago - 2 comments

#46 - Wildcard stocks in g3l_distribution

Issue - State: closed - Opened by lentinj about 3 years ago - 1 comment

#45 - Updated bounded_param arguments

Pull Request - State: closed - Opened by willbutler42 about 3 years ago

#44 - Support g3s_modeltime()ed stocks

Issue - State: closed - Opened by lentinj about 3 years ago - 1 comment
Labels: low-priority

#43 - Quota decision action for projections

Issue - State: closed - Opened by lentinj about 3 years ago - 4 comments

#42 - g3_tmb_relist output missing unoptimised values

Issue - State: closed - Opened by lentinj about 3 years ago - 2 comments

#41 - Adding likelihood distribution type to report names

Issue - State: closed - Opened by lentinj about 3 years ago - 3 comments

#40 - Accounting for age reading errors

Issue - State: open - Opened by bthe about 3 years ago - 7 comments

#39 - Expose L_inf and K for use in Quotafleet

Issue - State: closed - Opened by lentinj about 3 years ago - 1 comment

#38 - Integrate demo-ling/stock_param_functions.r into gadget3

Issue - State: closed - Opened by lentinj about 3 years ago

#37 - Allow gadget.fit to add it's own reports

Issue - State: closed - Opened by lentinj about 3 years ago - 6 comments

#36 - (regular) Tagging

Issue - State: closed - Opened by lentinj about 3 years ago - 9 comments

#35 - Updated setup scripts

Pull Request - State: closed - Opened by willbutler42 about 3 years ago - 5 comments

#34 - Narrative documentation / cookbook for global action options

Issue - State: closed - Opened by lentinj over 3 years ago - 1 comment

#33 - Error on stock__suit_fleet with g3a_predate_totalfleet

Issue - State: closed - Opened by pfrater over 3 years ago - 1 comment

#32 - Altered compile_flags in g3_tmb_adfun to work on Windows

Pull Request - State: closed - Opened by pfrater over 3 years ago - 2 comments

#31 - Migration

Issue - State: closed - Opened by lentinj over 3 years ago - 7 comments
Labels: gadget2-feature-parity

#30 - (CKMR) Tagging

Issue - State: open - Opened by lentinj over 3 years ago - 2 comments

#29 - Predation

Issue - State: closed - Opened by lentinj over 3 years ago - 23 comments
Labels: gadget2-feature-parity

#28 - g3_param_table default values

Issue - State: closed - Opened by lentinj over 3 years ago - 1 comment
Labels: core-g3

#27 - Dimnames on TMB reports

Issue - State: closed - Opened by lentinj over 3 years ago
Labels: core-g3, low-priority

#26 - A new home for f_substitute and call_replace

Issue - State: open - Opened by lentinj over 3 years ago
Labels: core-g3, low-priority

#25 - Spawning

Issue - State: closed - Opened by lentinj over 3 years ago - 15 comments
Labels: gadget2-feature-parity

#24 - Complete fleet modelling

Issue - State: closed - Opened by lentinj over 3 years ago - 4 comments
Labels: gadget2-feature-parity

#23 - stock_interact

Issue - State: closed - Opened by lentinj over 3 years ago - 2 comments
Labels: core-g3

#22 - More flexible g3_timeareadata - need data.frames by age too

Issue - State: open - Opened by lentinj over 3 years ago - 5 comments
Labels: core-g3

#21 - likelihood weights should default to params

Issue - State: closed - Opened by lentinj over 3 years ago - 3 comments

#20 - NaN in the gradient

Issue - State: closed - Opened by bthe over 3 years ago - 6 comments

#18 - avoid_zero doesn't work for negative numbers

Issue - State: open - Opened by lentinj over 3 years ago - 2 comments
Labels: core-g3, low-priority

#17 - Feeding alpha/beta back to gadget_fit

Issue - State: closed - Opened by lentinj over 3 years ago - 4 comments

#16 - Differences between calculated and approximated suitabilities

Issue - State: open - Opened by bthe over 3 years ago - 3 comments
Labels: bug

#15 - g3_to_variable_list

Issue - State: open - Opened by lentinj over 3 years ago - 1 comment
Labels: core-g3

#14 - Better error messaging

Issue - State: closed - Opened by lentinj over 3 years ago

#13 - zero / negative delta_len_f causes problems in growth_bbinom()

Issue - State: closed - Opened by lentinj over 3 years ago - 11 comments

#12 - Compilation failing under windows

Issue - State: closed - Opened by lentinj over 3 years ago - 4 comments
Labels: core-g3, low-priority

#9 - Estimation of survey catchability coefficients

Issue - State: closed - Opened by bthe over 3 years ago - 3 comments
Labels: gadget2-feature-parity

#8 - Document using debugger

Issue - State: closed - Opened by lentinj over 3 years ago - 1 comment

#4 - vendace - error in runing model with parameters

Issue - State: closed - Opened by vbartolino over 3 years ago - 4 comments

GitHub / gadget-framework/gadget3 issues and pull requests