Ecosyste.ms: Issues

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GitHub / gadget-framework/gadget3 issues and pull requests

#213 - Projection supporting features / g3_array_agg(..., agg = "length_mean")

Pull Request - State: closed - Opened by lentinj about 1 month ago

#212 - blubber thickness aggregated time series

Issue - State: closed - Opened by vbartolino about 2 months ago - 7 comments

#211 - recruitment deviations distribution and autocorrelation

Issue - State: open - Opened by vbartolino 2 months ago - 19 comments

#210 - Projection parameters, hockeyfleet quotas & MSEs

Pull Request - State: open - Opened by lentinj 2 months ago

#209 - Add surplus production models

Pull Request - State: closed - Opened by lentinj 2 months ago - 3 comments

#208 - Don't escape model_data environment names

Pull Request - State: closed - Opened by lentinj 2 months ago - 1 comment

#207 - params: Include selection tuple in g3_param_table() call

Pull Request - State: closed - Opened by lentinj 3 months ago

#206 - Swap detail_x__num for dstart_x__num

Pull Request - State: closed - Opened by lentinj 3 months ago

#205 - Default optimise = FALSE for parameters

Issue - State: open - Opened by bthe 4 months ago - 2 comments

#204 - Predator reporting fixes

Pull Request - State: closed - Opened by lentinj 3 months ago

#203 - Implement g3a_otherfood_table

Issue - State: open - Opened by lentinj 3 months ago

#201 - Time based suitability

Pull Request - State: closed - Opened by lentinj 3 months ago

#200 - g3a_report_detail has abundance/weight reported early

Issue - State: closed - Opened by lentinj 3 months ago - 1 comment

#199 - Include feeding level in weightjones' consumption

Pull Request - State: closed - Opened by lentinj 4 months ago

#198 - weightJones: max vs realised consumption

Issue - State: closed - Opened by vbartolino 4 months ago - 1 comment

#197 - Grouping time-varying parameters

Issue - State: open - Opened by bthe 4 months ago - 2 comments

#195 - Random effects not reported properly

Issue - State: closed - Opened by bthe 4 months ago - 6 comments

#194 - Functions in models

Pull Request - State: closed - Opened by lentinj 4 months ago

#193 - Add g3_array_agg()

Pull Request - State: closed - Opened by lentinj 4 months ago - 2 comments

#191 - R models should support data.frames

Pull Request - State: closed - Opened by lentinj 4 months ago

#190 - Background fixes

Pull Request - State: closed - Opened by lentinj 4 months ago

#189 - action_renewal: Switch to native dnorm

Pull Request - State: closed - Opened by lentinj 4 months ago

#187 - Allow dnorm in initial conditions to be all-zero

Pull Request - State: closed - Opened by lentinj 4 months ago - 3 comments

#186 - Add g3_param_project() for both random devates & projections

Pull Request - State: closed - Opened by lentinj 4 months ago - 4 comments

#185 - likelihood_data: Use correct iterator name for obsstock

Pull Request - State: closed - Opened by lentinj 4 months ago

#184 - Add g3l_sparsesample

Pull Request - State: closed - Opened by lentinj 5 months ago

#183 - Templated dif_pmax(), dif_pmin(), dif_pminmax()

Pull Request - State: closed - Opened by lentinj 5 months ago

#182 - action_mature: Add option to bound g3a_mature_continuous()

Pull Request - State: closed - Opened by lentinj 5 months ago - 2 comments

#181 - Combined g3_param_table / g3l_random_dnorm()

Issue - State: open - Opened by lentinj 6 months ago - 5 comments

#180 - Restore time-varying suitability

Pull Request - State: closed - Opened by lentinj 6 months ago

#179 - Param help & other fixes

Pull Request - State: closed - Opened by lentinj 6 months ago

#178 - action_weightloss: Implement g3a_weightloss #174

Pull Request - State: closed - Opened by lentinj 6 months ago - 4 comments

#177 - Absolute weightloss on fertility

Issue - State: closed - Opened by lentinj 6 months ago

#176 - Blubber thickness -> fertility link

Issue - State: closed - Opened by lentinj 6 months ago - 1 comment

#175 - Blubber thickness likelihood component

Issue - State: closed - Opened by lentinj 6 months ago - 37 comments

#174 - Weightloss action

Issue - State: closed - Opened by lentinj 6 months ago - 10 comments

#173 - Likelihood name parts / "predator" naming

Pull Request - State: closed - Opened by lentinj 7 months ago

#172 - Add g3a_spawn_recruitment_bevertonholt_ss3

Pull Request - State: closed - Opened by lentinj 7 months ago - 2 comments

#171 - Projections: Catch data

Issue - State: open - Opened by lentinj 7 months ago - 17 comments

#170 - Projection reports

Issue - State: open - Opened by lentinj 7 months ago

#169 - Surplus production models in place of otherfood

Issue - State: closed - Opened by lentinj 7 months ago - 8 comments

#168 - Random-effect spawning / simulations

Issue - State: closed - Opened by lentinj 7 months ago - 1 comment

#167 - Clashing g3_param_table g3_param ("haddock problem")

Issue - State: closed - Opened by lentinj 7 months ago - 1 comment

#166 - Seasonal / time-based selectivity

Issue - State: closed - Opened by lentinj 7 months ago

#165 - Expose array descriptions

Issue - State: open - Opened by lentinj 7 months ago

#164 - Move g3a_trace_nan, modern model debugging vignette

Issue - State: open - Opened by lentinj 7 months ago - 3 comments

#163 - Predation vignette, featuring otherfood

Issue - State: open - Opened by lentinj 7 months ago - 1 comment

#162 - equivalent to prey aggregation file

Issue - State: closed - Opened by vbartolino 7 months ago - 10 comments

#161 - Switch to TMBad by default

Issue - State: closed - Opened by lentinj 7 months ago - 1 comment

#159 - Predation likelhood - scsimple StomachContent

Issue - State: closed - Opened by lentinj 8 months ago - 5 comments

#158 - Predation - consumption-dependant Growth (WeightJones / MULTSPEC)

Issue - State: closed - Opened by lentinj 8 months ago - 1 comment

#157 - Combining lists of actions & single actions results in a mess

Issue - State: closed - Opened by lentinj 8 months ago - 2 comments

#155 - Predation - Otherfood equivalent

Issue - State: closed - Opened by lentinj 8 months ago - 7 comments

#154 - Predation likelihood

Issue - State: closed - Opened by lentinj 9 months ago - 1 comment

#153 - g3_parameterized by_area = TRUE

Issue - State: closed - Opened by lentinj 9 months ago - 1 comment

#152 - Predation selectivity reporting

Issue - State: closed - Opened by lentinj 9 months ago - 8 comments

#151 - Rework action_age so age re-ordering is possible

Pull Request - State: closed - Opened by lentinj 9 months ago

#150 - action_naturalmortality: Support age-based naturalmortality #149

Pull Request - State: closed - Opened by lentinj 9 months ago

#149 - g3a_naturalmortality error when restricted age

Issue - State: closed - Opened by vbartolino 9 months ago - 2 comments

#148 - Predation likelhood - g3l_distribution_stockratio_dirichlet

Issue - State: open - Opened by lentinj 10 months ago - 7 comments

#147 - Spawning into multiple stocks not splitting evenly

Issue - State: closed - Opened by lentinj 10 months ago - 9 comments

#146 - Fix splitting g3a_spawn() offspring over multiple stocks

Pull Request - State: closed - Opened by lentinj 10 months ago

#145 - Fixes required for latest R-devel

Pull Request - State: closed - Opened by lentinj 11 months ago

#144 - Integrated reporting

Pull Request - State: closed - Opened by lentinj 11 months ago

#143 - Order dimensions correctly for surveyindices

Pull Request - State: closed - Opened by lentinj 12 months ago - 2 comments

#142 - error with age-based index

Issue - State: closed - Opened by vbartolino 12 months ago - 3 comments

#140 - Better introductory vignettes

Pull Request - State: closed - Opened by lentinj about 1 year ago

#138 - Fix problems associated with auto_exp'ed parameters

Pull Request - State: closed - Opened by lentinj about 1 year ago

#137 - parscale updated for auto_exp parameters

Pull Request - State: closed - Opened by willbutler42 about 1 year ago - 7 comments

#136 - Look at spawning model in stock synthesis

Issue - State: closed - Opened by lentinj about 1 year ago - 1 comment

#135 - g3_optim: Move from gadgetutils

Issue - State: open - Opened by lentinj about 1 year ago

#133 - by_predator option added to andersenfleet

Pull Request - State: closed - Opened by willbutler42 about 1 year ago - 1 comment

#132 - Vignette: Introduction to gadget3 & key concepts

Issue - State: closed - Opened by lentinj about 1 year ago - 8 comments

#131 - Integrated reporting

Issue - State: closed - Opened by lentinj over 1 year ago - 16 comments

#130 - g3a_report not compatible with g3a_trace_nan

Issue - State: closed - Opened by lentinj over 1 year ago - 1 comment

#129 - Likelihood distribution aggregating over multiple years / decades

Issue - State: open - Opened by lentinj over 1 year ago - 2 comments

#128 - g3a_renewal_vonb_t0: t0 cannot equal an age

Issue - State: open - Opened by lentinj over 1 year ago - 2 comments

#127 - naturalmortality: M by-age by default #113

Pull Request - State: closed - Opened by lentinj over 1 year ago - 3 comments

#126 - Vignette dedicated to observation data fomatting

Issue - State: closed - Opened by lentinj over 1 year ago

#125 - g3a_report_detail error

Issue - State: open - Opened by MikkoVihtakari over 1 year ago - 3 comments

#124 - g3_init_guess migration / replacement

Issue - State: closed - Opened by lentinj over 1 year ago - 7 comments

#123 - g3a_initialconditions_normalcv

Issue - State: closed - Opened by lentinj over 1 year ago - 2 comments

#122 - run_tmb filename hash should include compiler args?

Issue - State: closed - Opened by lentinj over 1 year ago

#121 - Remove sparseMatrix support, Matrix dependency

Issue - State: closed - Opened by lentinj over 1 year ago - 2 comments

#120 - aggregate data before array-ifying in g3l_likelihood_data

Issue - State: open - Opened by lentinj over 1 year ago - 3 comments

#119 - Issue 118 parameterised defaults

Pull Request - State: closed - Opened by lentinj over 1 year ago

#118 - g3_parameterized()-based defaults

Issue - State: closed - Opened by lentinj over 1 year ago - 9 comments

#117 - More parameterized defaults, replacing g3_param_table

Pull Request - State: closed - Opened by lentinj over 1 year ago - 8 comments

#116 - g3_parameterized: Add help option

Issue - State: open - Opened by lentinj over 1 year ago - 3 comments

#115 - Seasonal recruitment / g3_parameterized(... by_step = TRUE)

Issue - State: closed - Opened by lentinj over 1 year ago - 1 comment

#114 - g3_eval cookbook

Issue - State: closed - Opened by lentinj over 1 year ago - 2 comments

#113 - g3_param(eterized) conflicting definitions / using M by-age

Issue - State: open - Opened by lentinj over 1 year ago - 7 comments

#112 - Parse cut-derived factors in likelihood data.frames

Issue - State: closed - Opened by lentinj over 1 year ago - 4 comments

#111 - time lookup formulas working for pseudoyears

Pull Request - State: closed - Opened by willbutler42 over 1 year ago - 5 comments