ga4gh/vrsatile-pydantic issues and pull requests

#73 - cicd: update release.yml (publish python distribution to pypi)

Pull Request - State: closed - Opened by korikuzma 12 months ago - 1 comment
Labels: priority:low, ci/cd

#72 - build!: upgrade to pydantic v2

Pull Request - State: closed - Opened by korikuzma about 1 year ago - 1 comment
Labels: priority:medium, build

#71 - build: pin pydantic v1

Pull Request - State: closed - Opened by jsstevenson over 1 year ago

#70 - build: pin pydantic v1

Pull Request - State: closed - Opened by jsstevenson over 1 year ago
Labels: priority:low

#69 - Ensure smooth migration to Pydantic v2

Issue - State: closed - Opened by jsstevenson over 1 year ago - 5 comments
Labels: bug, priority:medium

#68 - Bump tornado from 6.2 to 6.3.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#67 - fix: Update 0.0.X branch/version to track VRS 1.X.X

Pull Request - State: closed - Opened by korikuzma over 1 year ago
Labels: priority:medium

#66 - fix: CopyChange EFO namespace should be lowercase

Pull Request - State: closed - Opened by korikuzma over 1 year ago
Labels: bug, priority:low

#65 - CopyChange EFO namespace should be lowercase

Issue - State: closed - Opened by korikuzma over 1 year ago
Labels: bug, priority:low

#64 - docs: update readme

Pull Request - State: closed - Opened by korikuzma over 1 year ago
Labels: documentation, priority:low

#63 - feat: apply vrs 1.3 cnv changes to metaschema-update

Pull Request - State: closed - Opened by korikuzma over 1 year ago - 1 comment
Labels: enhancement, priority:high

#62 - Apply VRS 1.3 CNV changes to metaschema-update branch

Issue - State: closed - Opened by korikuzma over 1 year ago
Labels: enhancement, priority:high

#61 - docs: update readme

Pull Request - State: closed - Opened by korikuzma over 1 year ago
Labels: documentation, priority:low

#60 - Provide schema_extra's

Issue - State: open - Opened by korikuzma over 1 year ago

#59 - feat: add support for VRS 1.3 RC

Pull Request - State: closed - Opened by korikuzma over 1 year ago
Labels: enhancement, priority:high

#58 - Add support for VRS 1.3.X

Issue - State: closed - Opened by korikuzma over 1 year ago
Labels: enhancement, priority:high

#57 - fix: ensure semantic versioning + update readme (main)

Pull Request - State: closed - Opened by korikuzma over 1 year ago
Labels: priority:low

#56 - build: update requirements

Pull Request - State: closed - Opened by korikuzma almost 2 years ago
Labels: priority:low, build

#55 - build: update requirements

Pull Request - State: closed - Opened by korikuzma almost 2 years ago
Labels: priority:low, build

#54 - fix: use semantic version + update readme (staging)

Pull Request - State: closed - Opened by korikuzma almost 2 years ago
Labels: priority:low, test

#53 - Fix version

Issue - State: closed - Opened by korikuzma almost 2 years ago
Labels: test, chore

#52 - fix: remove FOCAL_GENOME_AMPLIFICATION from RelativeCopyClass

Pull Request - State: closed - Opened by korikuzma almost 2 years ago

#51 - Bump certifi from 2021.5.30 to 2022.12.7

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 2 comments

#50 - fix: add low level copy number gain to relative copy class

Pull Request - State: closed - Opened by korikuzma almost 2 years ago

#49 - change: RelativeCopyClass are now EFO curies

Pull Request - State: closed - Opened by korikuzma almost 2 years ago

#48 - Relative Copy Class should be CURIEs

Issue - State: closed - Opened by korikuzma almost 2 years ago - 2 comments

#47 - Consider handling multiple VRS versions in a single version

Issue - State: closed - Opened by korikuzma almost 2 years ago - 5 comments
Labels: enhancement

#46 - Staging

Pull Request - State: closed - Opened by korikuzma about 2 years ago

#45 - refactor: remove <value>_id fields from descriptors

Pull Request - State: closed - Opened by korikuzma about 2 years ago

#44 - Use `value` for value object descriptors

Issue - State: closed - Opened by korikuzma about 2 years ago

#43 - refactor: add/update therapeutic models

Pull Request - State: closed - Opened by korikuzma about 2 years ago

#42 - Add TherapeuticDescriptor + TherapeuticCollectionDescriptor

Issue - State: closed - Opened by korikuzma about 2 years ago

#41 - fix: copy number subject --> location + allow both sequence/chromosome location

Pull Request - State: closed - Opened by korikuzma about 2 years ago

#40 - Fix Absolute / Relative Copy Number

Issue - State: closed - Opened by korikuzma about 2 years ago

#39 - Staging

Pull Request - State: closed - Opened by korikuzma about 2 years ago

#38 - feat: Add/Update core/vrs/vrsatile schemas

Pull Request - State: closed - Opened by korikuzma about 2 years ago

#37 - Add models from updated metaschema

Issue - State: closed - Opened by korikuzma about 2 years ago - 1 comment

#36 - Set use_enum_value in config

Issue - State: open - Opened by korikuzma over 2 years ago
Labels: enhancement

#35 - Issue 34: CNVs subject is either feature or sequence_location

Pull Request - State: closed - Opened by korikuzma over 2 years ago

#34 - Update classes to follow vrs mature-model for Copy Number

Issue - State: closed - Opened by korikuzma over 2 years ago

#33 - Staging: Add Relative + Absolute Copy Number

Pull Request - State: closed - Opened by korikuzma over 2 years ago

#32 - Issue 31: Add RelativeCopyNumber, Update CopyNumber to AbsoluteCopyNumber

Pull Request - State: closed - Opened by korikuzma over 2 years ago