ga4gh/vrs-python issues and pull requests

#356 - update enref / deref

Issue - State: closed - Opened by ahwagner 11 months ago

#355 - docs: update docstring for VrsObjectIdentifierIs

Pull Request - State: closed - Opened by korikuzma 12 months ago - 1 comment
Labels: documentation, priority:low

#354 - Update SeqRepo collection to `2024-02-20`

Issue - State: closed - Opened by korikuzma 12 months ago
Labels: 2.0-alpha, priority:low, build

#353 - Issue 351.2

Pull Request - State: closed - Opened by ahwagner 12 months ago

#352 - Restore repeat subunit length re-computation for normalization

Pull Request - State: closed - Opened by ehclark 12 months ago - 1 comment

#351 - Repeat subunit length not always correct

Issue - State: closed - Opened by ehclark 12 months ago - 1 comment
Labels: bug, 2.0-alpha, priority:high

#350 - Replace `constr` with `StringConstraints`/`Field`

Issue - State: closed - Opened by theferrit32 12 months ago
Labels: priority:low

#349 - Disabling Genotype

Issue - State: open - Opened by ahwagner 12 months ago

#348 - cicd: update branch name in release.yml

Pull Request - State: closed - Opened by korikuzma 12 months ago
Labels: priority:high, ci/cd

#347 - Allow RLE seq limit to be set in VCF Annotator

Issue - State: open - Opened by korikuzma 12 months ago
Labels: enhancement, 2.0-alpha, priority:low

#346 - fix: add rle_seq_limit to AlleleTranslator

Pull Request - State: closed - Opened by korikuzma 12 months ago - 3 comments
Labels: bug, priority:high

#345 - feat: add param to VCFAnnotator to optionally require validation checks

Pull Request - State: closed - Opened by korikuzma 12 months ago - 3 comments
Labels: enhancement, 2.0-alpha, priority:medium

#344 - ‘NoneType’ object has no attribute ‘root’ when getting HGVS from Python dict

Issue - State: closed - Opened by quinnwai 12 months ago - 1 comment
Labels: bug, priority:high

#343 - Allow reference sequence validation to be toggled for VCF annotation

Issue - State: closed - Opened by quinnwai almost 1 year ago
Labels: enhancement, 2.0-alpha, priority:medium

#342 - computed identifiers using pydantic model serializers

Pull Request - State: closed - Opened by ahwagner about 1 year ago - 15 comments

#341 - Standardize serialize behavior for SequenceReference

Issue - State: closed - Opened by ahwagner about 1 year ago - 2 comments

#340 - `VCFAnnotate.annotate` cannot reliably read from and write to VCF

Issue - State: closed - Opened by quinnwai about 1 year ago - 6 comments

#339 - repeatSubunitLength usage clarification

Issue - State: closed - Opened by ehclark about 1 year ago - 12 comments

#338 - Update serialization code

Pull Request - State: closed - Opened by theferrit32 about 1 year ago - 4 comments

#337 - Fix GA4GH Serialize / Digest behavior for RLEs

Issue - State: closed - Opened by ahwagner about 1 year ago
Labels: bug, 2.0-alpha

#336 - Issue #334: Normalization

Pull Request - State: closed - Opened by ahwagner about 1 year ago - 2 comments

#335 - Fix Enref behavior for haplotypes

Issue - State: open - Opened by ahwagner about 1 year ago - 2 comments
Labels: bug, 2.0-alpha

#334 - Normalization extensions for VRS 2.x

Issue - State: open - Opened by ahwagner about 1 year ago - 4 comments
Labels: 2.0-alpha

#333 - Update release action with new branch name

Issue - State: closed - Opened by jsstevenson about 1 year ago
Labels: ci/cd

#332 - chore: remove more unused stuff

Pull Request - State: closed - Opened by jsstevenson about 1 year ago - 1 comment

#331 - cicd: remove tox

Pull Request - State: closed - Opened by jsstevenson about 1 year ago

#330 - build: specify configs in pyproject.toml

Pull Request - State: closed - Opened by jsstevenson about 1 year ago

#329 - chore: remove unused files

Pull Request - State: closed - Opened by jsstevenson about 1 year ago - 1 comment

#328 - fix: use start/end constraints for `digest` and `refgetAccession` fields

Pull Request - State: closed - Opened by jsstevenson about 1 year ago - 1 comment