Ecosyste.ms: Issues

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GitHub / ga4gh/ga4gh-client issues and pull requests

#83 - search_phenotype_association_sets automatically requests pageSize 0

Issue - State: open - Opened by ahwagner over 7 years ago - 4 comments

#82 - Protobuf 3.2.0

Pull Request - State: open - Opened by ljdursi over 7 years ago - 1 comment

#81 - Error running against GA4GH 1000 Genomes Examples

Issue - State: open - Opened by huiaatch over 7 years ago - 3 comments

#80 - Get rid of doc build warnings

Pull Request - State: closed - Opened by dcolligan over 7 years ago - 2 comments

#79 - Get rid of warnings in doc build

Issue - State: open - Opened by dcolligan over 7 years ago

#78 - Change reqs for release

Pull Request - State: closed - Opened by dcolligan over 7 years ago - 1 comment

#77 - Update to protobuf 3.2

Issue - State: open - Opened by david4096 over 7 years ago

#76 - Change RTD links in docs

Pull Request - State: closed - Opened by dcolligan over 7 years ago - 2 comments

#75 - Add variant search example to readme

Issue - State: open - Opened by kozbo over 7 years ago

#74 - Update docs for schemas -> ga4gh-schemas rename

Pull Request - State: closed - Opened by dcolligan over 7 years ago - 1 comment

#73 - Change readme to rst, copy pypi readme

Pull Request - State: closed - Opened by david4096 over 7 years ago - 1 comment

#72 - Add better instructions to install/develop

Issue - State: open - Opened by ahwagner over 7 years ago - 3 comments

#71 - Update release notes (#70)

Pull Request - State: closed - Opened by kozbo over 7 years ago - 1 comment

#70 - Update Release notes for the v0.6.0a10 release

Issue - State: closed - Opened by kozbo over 7 years ago - 1 comment

#69 - Add peer service

Pull Request - State: closed - Opened by david4096 over 7 years ago - 2 comments

#68 - create a basic Pypi info page for the client

Pull Request - State: closed - Opened by kozbo over 7 years ago - 4 comments

#67 - Search RNA Expressions by feature names rather than IDs

Issue - State: closed - Opened by kozbo over 7 years ago - 1 comment

#66 - Automatically deploy from Travis

Pull Request - State: closed - Opened by dcolligan over 7 years ago - 2 comments

#65 - Version installed from pypi is 0.0.5

Issue - State: open - Opened by david4096 over 7 years ago - 1 comment

#64 - remove feature_id from ExpressionLevel

Pull Request - State: closed - Opened by saupchurch over 7 years ago - 2 comments

#63 - Bigwig

Pull Request - State: closed - Opened by ejacox over 7 years ago - 1 comment

#62 - Prevent erroneous checkins of constraints.txt

Pull Request - State: closed - Opened by dcolligan over 7 years ago

#61 - Relax protobuf requirement

Pull Request - State: open - Opened by david4096 over 7 years ago - 1 comment

#60 - Peers

Issue - State: closed - Opened by david4096 over 7 years ago

#59 - Revert requirements to development cycle

Pull Request - State: closed - Opened by david4096 over 7 years ago

#58 - Update pypi readme

Issue - State: closed - Opened by david4096 over 7 years ago

#57 - v0.6.0a9.post2 release

Pull Request - State: closed - Opened by dcolligan over 7 years ago - 3 comments

#56 - Remove protocol.py

Pull Request - State: closed - Opened by dcolligan over 7 years ago - 1 comment

#55 - Create release 0.6.0a9.post1

Pull Request - State: closed - Opened by dcolligan over 7 years ago - 2 comments

#54 - Update 'RnaQuantification' attribute names in 'SearchRnaQuantificationsRunner'

Pull Request - State: closed - Opened by emi80 over 7 years ago - 2 comments

#52 - Update 'ExpressionLevel' attribute names in 'SearchExpressionLevelsRunner'

Pull Request - State: closed - Opened by emi80 over 7 years ago - 2 comments

#50 - Add ga4gh-common to constraints file

Pull Request - State: closed - Opened by dcolligan over 7 years ago - 1 comment

#49 - Fix requirements, add release notes

Pull Request - State: closed - Opened by david4096 over 7 years ago - 1 comment

#48 - Implement updated ontology term

Pull Request - State: closed - Opened by david4096 over 7 years ago - 1 comment

#47 - Add conda env

Pull Request - State: closed - Opened by david4096 over 7 years ago - 2 comments

#46 - Change info to attributes

Pull Request - State: closed - Opened by david4096 over 7 years ago - 1 comment

#45 - Implement updated ontology term

Issue - State: closed - Opened by david4096 over 7 years ago

#44 - Implement attributes field

Issue - State: closed - Opened by david4096 over 7 years ago

#43 - Update status.rst

Pull Request - State: closed - Opened by kozbo over 7 years ago

#42 - Remove unset values from JSON

Pull Request - State: closed - Opened by david4096 almost 8 years ago - 2 comments

#41 - 612 taxon id

Pull Request - State: closed - Opened by ejacox almost 8 years ago - 2 comments

#40 - Improve documentation

Pull Request - State: closed - Opened by david4096 almost 8 years ago - 1 comment

#39 - Calls genotype list

Pull Request - State: closed - Opened by david4096 almost 8 years ago - 2 comments

#38 - Change genotype to list value

Issue - State: closed - Opened by david4096 almost 8 years ago

#37 - Biosample 1394

Pull Request - State: closed - Opened by ejacox almost 8 years ago - 3 comments

#36 - Ran into this flake error when running travis

Issue - State: closed - Opened by david4096 almost 8 years ago

#35 - Change to protobuf 3.1

Pull Request - State: closed - Opened by david4096 almost 8 years ago - 2 comments

#34 - Add id token option and set header

Pull Request - State: closed - Opened by david4096 almost 8 years ago - 2 comments

#33 - Add authentication via header

Issue - State: closed - Opened by david4096 almost 8 years ago

#32 - Add option of silencing client output

Issue - State: open - Opened by dcolligan almost 8 years ago - 1 comment

#31 - Add dev glue

Pull Request - State: closed - Opened by dcolligan almost 8 years ago

#30 - Add overview documentation

Issue - State: open - Opened by david4096 almost 8 years ago

#29 - Requests made by client with key=invalid argument

Issue - State: open - Opened by david4096 almost 8 years ago

#28 - Add config for client

Issue - State: open - Opened by david4096 almost 8 years ago

#27 - Client callsets text output garbled

Issue - State: open - Opened by david4096 almost 8 years ago

#26 - Useful summaries needed for default client CLI output

Issue - State: open - Opened by david4096 almost 8 years ago

#24 - Fix client logging

Issue - State: open - Opened by david4096 almost 8 years ago

#23 - G2P Client search_phenotype missing `qualifiers` parameter

Issue - State: open - Opened by bwalsh almost 8 years ago

#22 - Hierarchical namespace

Pull Request - State: closed - Opened by dcolligan almost 8 years ago - 1 comment

#21 - Add documentation (from former server docs)

Pull Request - State: closed - Opened by dcolligan almost 8 years ago

#20 - Add documentation

Issue - State: closed - Opened by dcolligan almost 8 years ago - 1 comment

#19 - Use newer ga4gh-* packages

Pull Request - State: closed - Opened by dcolligan almost 8 years ago - 1 comment

#18 - Make client depend on schemas

Pull Request - State: closed - Opened by dcolligan almost 8 years ago

#17 - fix flake

Pull Request - State: closed - Opened by dcolligan almost 8 years ago

#16 - ga4gh_run_tests still not playing nice with flake8 wildcards

Issue - State: closed - Opened by dcolligan almost 8 years ago - 1 comment

#15 - Integrate ga4gh-common package

Pull Request - State: closed - Opened by dcolligan almost 8 years ago - 1 comment

#14 - Get rid of sphinx-argparse requirement...

Pull Request - State: closed - Opened by dcolligan almost 8 years ago

#13 - Enable Sphinx documentation

Pull Request - State: closed - Opened by dcolligan almost 8 years ago

#12 - 'module' object has no attribute 'HttpClient'

Issue - State: closed - Opened by kozbo almost 8 years ago - 2 comments

#11 - Enable ReadTheDocs

Issue - State: closed - Opened by dcolligan almost 8 years ago - 1 comment

#10 - Releasing 0.0.1

Pull Request - State: closed - Opened by dcolligan almost 8 years ago

#9 - Rename ga4gh dir to ga4gh_client

Pull Request - State: closed - Opened by dcolligan almost 8 years ago

#8 - Workaround to get process_schemas.py to work

Pull Request - State: closed - Opened by dcolligan almost 8 years ago

#7 - move code files to ga4gh_client

Pull Request - State: closed - Opened by dcolligan almost 8 years ago

#6 - Put client files in ga4gh_client dir

Pull Request - State: closed - Opened by dcolligan almost 8 years ago

#5 - Publish to pypi

Issue - State: closed - Opened by david4096 almost 8 years ago - 1 comment

#4 - more todo edits

Pull Request - State: closed - Opened by dcolligan almost 8 years ago

#3 - update todo

Pull Request - State: closed - Opened by dcolligan almost 8 years ago

#2 - Modify travis settings

Pull Request - State: closed - Opened by dcolligan almost 8 years ago

#1 - First substantive commit

Pull Request - State: closed - Opened by dcolligan almost 8 years ago - 1 comment