g2nb/igv-jupyter issues and pull requests

#52 - Support for JupyterHub 4?

Issue - State: open - Opened by ecederstrand 8 months ago - 2 comments

#51 - Trouble loading azure or local crams

Issue - State: open - Opened by kateelliottarc 11 months ago - 1 comment

#50 - 1.0.0 release not tagged

Issue - State: closed - Opened by twrightsman about 3 years ago - 1 comment

#49 - Update command-line flags for labextension enable

Pull Request - State: closed - Opened by twrightsman about 3 years ago

#48 - Problems loading GTF file

Issue - State: closed - Opened by sagnikbanerjee15 about 3 years ago - 2 comments

#47 - export information of a variant

Issue - State: closed - Opened by asmlgkj over 3 years ago - 2 comments

#46 - .show() produces no output when offline

Issue - State: closed - Opened by sigurjonaxel over 3 years ago - 2 comments

#45 - Problems using files/ to access local .fa file

Issue - State: closed - Opened by mezarque over 3 years ago - 6 comments

#44 - Feature Request: Support for ROI

Issue - State: closed - Opened by Sammi-Smith over 3 years ago - 4 comments

#43 - `.show()` produces no output

Issue - State: closed - Opened by jamesbaye over 3 years ago - 1 comment

#42 - "Error accessing resource: presigned url Status:0" when trying to load presigned url to igv-jupyter

Issue - State: closed - Opened by JoannaTan almost 4 years ago - 2 comments

#41 - IGV Browser with local reference genome fasta file

Issue - State: closed - Opened by Irsan88 almost 4 years ago - 8 comments

#40 - "Error loading track data" in Jupyter notebook when trying to load local BAM file

Issue - State: closed - Opened by enushi about 4 years ago - 13 comments

#39 - b.show() AttributeError: 'NoneType' object has no attribute 'session'

Issue - State: closed - Opened by cccnrc over 4 years ago - 6 comments

#38 - Feature Request: Support for JupyterLab

Issue - State: closed - Opened by jonn-smith over 4 years ago - 4 comments

#37 - problems when editing output SVG file in Illustrator

Issue - State: closed - Opened by rysterzhu over 4 years ago - 3 comments

#36 - Entire extend of the deletion not highlighted in notebook

Issue - State: closed - Opened by vkullu over 4 years ago - 3 comments

#35 - Unable to Load Local Bam File

Issue - State: closed - Opened by callieboskin over 4 years ago - 3 comments

#34 - How to use other fasta file as the reference

Issue - State: closed - Opened by Sotdo over 4 years ago - 1 comment

#33 - bam file won't display

Issue - State: closed - Opened by njbernstein about 5 years ago - 6 comments

#31 - Queue

Pull Request - State: closed - Opened by jrobinso over 5 years ago

#30 - Added message queue to Browser class

Pull Request - State: closed - Opened by tmtabor over 5 years ago

#29 - IGV Browser not ready

Issue - State: closed - Opened by vanetten over 5 years ago - 27 comments

#28 - Error when running show()

Issue - State: closed - Opened by dakomura over 5 years ago - 2 comments

#27 - Extensions enabled, but .show() .load_track() don't work

Issue - State: closed - Opened by JasonJWilliamsNY over 5 years ago - 2 comments

#26 - Enable trackclick events in igv-jupyter

Issue - State: closed - Opened by pwrose over 5 years ago - 1 comment

#25 - Specify local file paths outside the project folder

Issue - State: closed - Opened by khourhin almost 6 years ago - 5 comments

#24 - Compatibility with JupyterHub

Pull Request - State: closed - Opened by tmtabor almost 6 years ago

#23 - 'IGV Browser not ready'

Issue - State: closed - Opened by sooheelee almost 6 years ago - 30 comments

#22 - multiple bigwigs in one track?

Issue - State: closed - Opened by sunworshipper about 6 years ago - 2 comments

#21 - Install and enable igv.js nbextension automatically with PIP install

Pull Request - State: closed - Opened by tmtabor about 6 years ago - 1 comment

#20 - Running a demo on MyBinder

Issue - State: closed - Opened by psychemedia about 6 years ago - 9 comments

#19 - Updates to igvjs and dev_install.sh to fix layout and development.

Pull Request - State: closed - Opened by turner about 6 years ago

#18 - Fix Layout Issues.

Pull Request - State: closed - Opened by turner about 6 years ago - 2 comments

#17 - Various display improvement suggestions

Issue - State: closed - Opened by a-slide about 6 years ago - 2 comments

#16 - Pythonisation

Issue - State: closed - Opened by a-slide about 6 years ago

#15 - Add image output API

Issue - State: closed - Opened by jrobinso about 6 years ago - 6 comments

#14 - V2

Pull Request - State: closed - Opened by jrobinso about 6 years ago

#14 - V2

Pull Request - State: closed - Opened by jrobinso about 6 years ago

#13 - Install igv on Jupyter lab

Issue - State: closed - Opened by amirshams84 about 6 years ago - 10 comments

#12 - Solution for notebook sharing with embed IGV widget

Issue - State: closed - Opened by a-slide about 6 years ago - 4 comments

#11 - Changing References does nothing

Issue - State: closed - Opened by ijoseph over 6 years ago - 6 comments

#10 - cannot install jupyter with conda

Issue - State: closed - Opened by dridk almost 7 years ago - 2 comments

#10 - cannot install jupyter with conda

Issue - State: closed - Opened by dridk almost 7 years ago - 2 comments

#9 - BigWig files visualization using built-in Jupyter server

Issue - State: closed - Opened by NemanjaVucic90 about 7 years ago - 16 comments

#9 - BigWig files visualization using built-in Jupyter server

Issue - State: closed - Opened by NemanjaVucic90 about 7 years ago - 16 comments

#8 - Bam reads are cutoff

Issue - State: closed - Opened by jfear over 8 years ago - 10 comments

#8 - Bam reads are cutoff

Issue - State: closed - Opened by jfear over 8 years ago - 10 comments

#7 - Can't access local file: range-byte header ignored

Issue - State: closed - Opened by jfear over 8 years ago - 6 comments

#7 - Can't access local file: range-byte header ignored

Issue - State: closed - Opened by jfear over 8 years ago - 6 comments

#6 - jupyter notebook igv, doubleClickDelay=1 does not disable "double click to zoom"

Issue - State: closed - Opened by paul-shannon over 8 years ago - 11 comments

#6 - jupyter notebook igv, doubleClickDelay=1 does not disable "double click to zoom"

Issue - State: closed - Opened by paul-shannon over 8 years ago - 11 comments

#5 - Passing over GRanges to IGV.js

Issue - State: closed - Opened by KhagayN over 8 years ago - 1 comment

#5 - Passing over GRanges to IGV.js

Issue - State: closed - Opened by KhagayN over 8 years ago - 1 comment

#4 - how would I actually view the plot?

Issue - State: closed - Opened by KhagayN over 8 years ago - 9 comments

#4 - how would I actually view the plot?

Issue - State: closed - Opened by KhagayN over 8 years ago - 9 comments

#3 - Rename "search_track" to "search" and update comment

Issue - State: closed - Opened by jrobinso over 8 years ago - 1 comment

#3 - Rename "search_track" to "search" and update comment

Issue - State: closed - Opened by jrobinso over 8 years ago - 1 comment

#2 - igv.js in a notebook: specify track from, eg, a pandas (bed-like) data.frame

Issue - State: closed - Opened by paul-shannon over 8 years ago - 9 comments

#2 - igv.js in a notebook: specify track from, eg, a pandas (bed-like) data.frame

Issue - State: closed - Opened by paul-shannon over 8 years ago - 9 comments

#1 - Export png or widget

Issue - State: closed - Opened by jfear over 8 years ago - 5 comments

GitHub / g2nb/igv-jupyter issues and pull requests