Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / funecology/fundiversity issues and pull requests

#85 - Add references to fd_fric_intersect()

Pull Request - State: closed - Opened by Bisaloo 3 months ago

#84 - Fix some recent lints

Pull Request - State: closed - Opened by Bisaloo 3 months ago - 2 comments

#83 - Add vignette for non-continuous trait data

Pull Request - State: open - Opened by Rekyt 10 months ago
Labels: documentation, enhancement

#82 - Add benchmark scripts and template

Pull Request - State: open - Opened by Rekyt 10 months ago - 1 comment

#81 - Fix no site names for all functions

Pull Request - State: closed - Opened by Rekyt 10 months ago - 1 comment

#80 - Add use_memoise helper to memoise chull fct on the fly

Pull Request - State: closed - Opened by Bisaloo 11 months ago - 7 comments

#79 - Have a worked through example with individual level dataset

Issue - State: open - Opened by Rekyt 11 months ago
Labels: documentation, enhancement

#78 - Try setting up touchstone for continuous benchmarking

Pull Request - State: closed - Opened by Bisaloo 12 months ago - 2 comments

#77 - Be more specific in the help with memoization

Issue - State: closed - Opened by Rekyt 12 months ago - 2 comments
Labels: documentation, enhancement

#76 - fd_dis gives error if site x species matrix does not have row names

Issue - State: closed - Opened by mahonmb about 1 year ago - 4 comments
Labels: bug

#75 - Should we write a vignette for non-continuous trait data?

Issue - State: open - Opened by Rekyt over 1 year ago - 1 comment
Labels: documentation

#74 - Add article in CITATION and DESCRIPTION

Pull Request - State: closed - Opened by Bisaloo over 1 year ago - 2 comments

#73 - Add link to published paper

Issue - State: closed - Opened by Rekyt over 1 year ago
Labels: documentation

#72 - Merge manuscript branch

Pull Request - State: closed - Opened by Rekyt over 1 year ago - 1 comment

#71 - Using future and memoise together

Issue - State: closed - Opened by Rekyt over 1 year ago - 2 comments
Labels: documentation, enhancement

#70 - Update test coverage workflow

Pull Request - State: closed - Opened by Rekyt over 1 year ago

#69 - Fix fdis bugs on matrix input #68

Pull Request - State: closed - Opened by Rekyt over 1 year ago

#68 - fd_fdis() bugs when site-species object is a data.frame() expects a matrix.

Issue - State: closed - Opened by Rekyt over 1 year ago - 2 comments
Labels: bug

#67 - Warn when NA are output in FRic computations (fix #59)

Pull Request - State: closed - Opened by Rekyt almost 2 years ago - 1 comment

#66 - Better vignettes

Pull Request - State: closed - Opened by Rekyt almost 2 years ago - 1 comment

#65 - Better vignettes

Pull Request - State: closed - Opened by Rekyt almost 2 years ago

#64 - Remove Alpha from title (Fix #63)

Pull Request - State: closed - Opened by Rekyt almost 2 years ago - 1 comment

#62 - Update names and titles of vignettes (fix #61)

Pull Request - State: closed - Opened by Rekyt almost 2 years ago - 3 comments

#61 - Renaming the vignettes to order them logically?

Issue - State: closed - Opened by Rekyt almost 2 years ago - 2 comments
Labels: documentation

#60 - Add tip in error message because of non-continuous traits

Issue - State: open - Opened by Rekyt almost 2 years ago - 1 comment
Labels: enhancement

#59 - FRic returns NA without warnings nor messages

Issue - State: closed - Opened by Rekyt almost 2 years ago - 1 comment
Labels: bug, documentation

#58 - Use expect_identical() and expect_named() where possible

Pull Request - State: closed - Opened by Bisaloo about 2 years ago

#57 - Add 1st draft for correctness vignette

Pull Request - State: closed - Opened by Bisaloo about 2 years ago - 1 comment

#56 - Get FDiv to work on matrices without rownames

Pull Request - State: closed - Opened by Bisaloo about 2 years ago - 1 comment

#55 - fd_fdiv() returns `NaN` on datasets without rownames

Issue - State: closed - Opened by Bisaloo about 2 years ago
Labels: bug

#54 - Review manuscript July 2022

Pull Request - State: closed - Opened by Bisaloo about 2 years ago - 1 comment

#53 - Use future.globals = FALSE in future_Xapply()

Pull Request - State: closed - Opened by Bisaloo over 2 years ago - 1 comment

#52 - Curate zenodo metadata manually

Pull Request - State: closed - Opened by Bisaloo over 2 years ago - 2 comments

#51 - Add hexlogo for fundiversity (fixes #36)

Pull Request - State: closed - Opened by Rekyt over 2 years ago - 1 comment

#50 - Add tests for non-numerical traits (fix #41)

Pull Request - State: closed - Opened by Rekyt over 2 years ago - 7 comments

#49 - Add depends only check

Pull Request - State: closed - Opened by Bisaloo over 2 years ago - 8 comments

#48 - Simplify and fix GitHub action

Pull Request - State: closed - Opened by Bisaloo over 2 years ago

#47 - Simplify CI matrix by using `_R_CHECK_DEPENDS_ONLY_TESTS_`

Issue - State: closed - Opened by Bisaloo over 2 years ago - 2 comments

#46 - Add autotest

Pull Request - State: closed - Opened by Bisaloo over 2 years ago - 3 comments

#45 - Investigate RCGAL as a replacement of geometry

Issue - State: closed - Opened by Bisaloo over 2 years ago - 4 comments
Labels: enhancement, on hold

#44 - Specific error obtained with Qhull

Issue - State: open - Opened by Rekyt almost 3 years ago - 3 comments

#43 - Release fundiversity 0.2.1

Issue - State: closed - Opened by Bisaloo about 3 years ago

#42 - Add qhull_warnings() function

Pull Request - State: open - Opened by Bisaloo about 3 years ago - 6 comments
Labels: on hold

#41 - Errors when using non-quantitative traits in fd_fric()

Issue - State: closed - Opened by Rekyt about 3 years ago

#40 - Add tests and fixes for sites with no species

Pull Request - State: closed - Opened by Rekyt about 3 years ago - 13 comments

#39 - Error when site contains no species in fd_fdiv() and fd_feve()

Issue - State: closed - Opened by Rekyt about 3 years ago - 2 comments

#38 - Managing error from qhull transferred to geometry::convhulln() in fd_chull()

Issue - State: open - Opened by Rekyt over 3 years ago
Labels: on hold

#37 - Fix condition expectations in prevision of testthat breaking change

Pull Request - State: closed - Opened by lionel- over 3 years ago - 3 comments

#36 - Hex logo

Issue - State: closed - Opened by Rekyt over 3 years ago
Labels: help wanted

#35 - Add references that compute convex hulls intersections

Issue - State: closed - Opened by Bisaloo over 3 years ago
Labels: help wanted

#34 - Parallelization with `future.apply::future_apply()` - fix #13

Pull Request - State: closed - Opened by Rekyt over 3 years ago - 4 comments

#33 - Option to toggle off memoization - fix #31

Pull Request - State: closed - Opened by Rekyt over 3 years ago - 3 comments

#32 - Add fd_fdis

Pull Request - State: closed - Opened by Bisaloo over 3 years ago - 2 comments

#30 - Implement intersection of functional volume - fix #26

Pull Request - State: closed - Opened by Rekyt over 3 years ago - 3 comments

#29 - Add action to test without Suggests

Pull Request - State: closed - Opened by Bisaloo over 3 years ago - 1 comment

#28 - Add CITATION file

Issue - State: closed - Opened by Rekyt over 3 years ago - 1 comment

#27 - Archive releases into Zenodo

Issue - State: closed - Opened by Rekyt over 3 years ago - 1 comment

#26 - New index: intersection between convex hulls

Issue - State: closed - Opened by Rekyt over 3 years ago - 4 comments
Labels: enhancement

#25 - Implement chull memoisation

Pull Request - State: closed - Opened by Rekyt over 3 years ago - 1 comment

#24 - Start design principles vignette

Pull Request - State: closed - Opened by Bisaloo over 3 years ago - 2 comments

#23 - Create 'design principles' vignette

Issue - State: closed - Opened by Bisaloo over 3 years ago

#22 - Add reference in DESCRIPTION

Pull Request - State: closed - Opened by Bisaloo over 3 years ago - 1 comment

#21 - Fix #15

Pull Request - State: closed - Opened by Bisaloo over 3 years ago

#20 - Mention vignette and link them in the README

Issue - State: closed - Opened by Rekyt over 3 years ago

#19 - Implement sparse matrices where it's possible fix #10

Pull Request - State: closed - Opened by Rekyt over 3 years ago

#18 - First implementation of FEve fix #2

Pull Request - State: closed - Opened by Rekyt over 3 years ago - 2 comments

#17 - Do not compute convex hulls on each row separately

Issue - State: closed - Opened by Bisaloo over 3 years ago - 5 comments
Labels: performance

#16 - Handle the different error sources from geometry::convhulln()

Issue - State: closed - Opened by Rekyt over 3 years ago - 2 comments

#15 - FDiv is computed on the vertices of the convex hull

Issue - State: closed - Opened by Bisaloo over 3 years ago - 1 comment

#14 - Add comparison to theoretical algorithmic complexity to performance vignette

Issue - State: closed - Opened by Bisaloo almost 4 years ago - 2 comments

#13 - Parallel computation of functional diversity indices

Issue - State: closed - Opened by Rekyt almost 4 years ago - 4 comments
Labels: enhancement, question

#12 - Warn user when computing FRic with many species/many traits

Issue - State: closed - Opened by Rekyt almost 4 years ago - 1 comment
Labels: enhancement

#11 - Improve function efficiency through matrix algebra

Issue - State: closed - Opened by Rekyt almost 4 years ago - 3 comments
Labels: enhancement

#10 - Add support for sparse matrices

Issue - State: closed - Opened by Rekyt almost 4 years ago
Labels: enhancement

#9 - Site name when no site-species matrix is provided

Issue - State: closed - Opened by Rekyt almost 4 years ago - 2 comments

#8 - Add two vignettes: tutorial and performance

Pull Request - State: closed - Opened by Rekyt almost 4 years ago - 2 comments

#7 - Standardize FRic by theoretical maximum

Issue - State: closed - Opened by Rekyt almost 4 years ago

#6 - Check for species common between trait dataset and site-species matrix

Pull Request - State: closed - Opened by Rekyt almost 4 years ago - 1 comment

#5 - Citation & documentation

Issue - State: closed - Opened by Rekyt almost 4 years ago

#4 - Performance comparison

Issue - State: closed - Opened by Rekyt almost 4 years ago - 2 comments
Labels: enhancement

#3 - Check that computations are numerically correct

Issue - State: closed - Opened by Rekyt almost 4 years ago - 2 comments

#2 - Dependency for MST in FEve

Issue - State: closed - Opened by Bisaloo almost 4 years ago - 2 comments
Labels: enhancement

#1 - How should we deal with missing values?

Issue - State: closed - Opened by Bisaloo almost 4 years ago - 4 comments
Labels: question