fulcrumgenomics/commons issues and pull requests

#82 - [feat] Add a reset method to ReflectiveBuilder

Pull Request - State: open - Opened by nh13 over 2 years ago - 1 comment

#81 - Bump version to 1.4.0 for release.

Pull Request - State: closed - Opened by tfenne over 2 years ago - 1 comment

#79 - Remove the codacy badge

Pull Request - State: closed - Opened by nh13 over 2 years ago - 1 comment

#78 - Fixup after renaming master to main.

Pull Request - State: closed - Opened by tfenne over 2 years ago - 1 comment

#77 - Removed support for scala 2.12

Pull Request - State: closed - Opened by tfenne over 2 years ago - 1 comment

#76 - A parallel iterator implementation.

Pull Request - State: closed - Opened by tfenne over 2 years ago - 3 comments

#75 - Make sure IntelDeflator is shown as unsupported on non-x86 Apple machines e.g. M1x.

Pull Request - State: closed - Opened by tfenne over 2 years ago - 1 comment

#74 - Fix AsyncIterator race condition when first element in source raises

Pull Request - State: closed - Opened by clintval almost 3 years ago - 9 comments

#73 - SimpleCounter iterators are in insertion order

Pull Request - State: closed - Opened by nh13 almost 3 years ago - 3 comments

#72 - [feature] a least recently used cache collection

Pull Request - State: closed - Opened by nh13 about 3 years ago - 1 comment

#71 - Make BiMap a better all around Scala Map collection

Pull Request - State: closed - Opened by clintval about 3 years ago - 1 comment

#70 - Update unittests.yaml

Pull Request - State: closed - Opened by nh13 about 3 years ago - 1 comment

#69 - Change CI from travis-ci to github actions

Pull Request - State: closed - Opened by nh13 about 3 years ago - 1 comment

#68 - Use thread-safe DateTimeFormatter in log emissions

Pull Request - State: closed - Opened by clintval over 3 years ago - 6 comments

#67 - [bugfix] Sanitize file name now truncates files to avoid filesystem errors on names larger than 255 characters.

Pull Request - State: closed - Opened by jacarey almost 4 years ago

#66 - row.get returns Some(" ") instead of returning None when allowMissingColumn flag is set

Pull Request - State: closed - Opened by dsommer almost 4 years ago - 2 comments

#65 - Move FgbioEnum out of fgbio into commons

Issue - State: open - Opened by nh13 over 4 years ago
Labels: help wanted

#64 - Add an option to StirngUtil.split to stuff remaining text in the last

Pull Request - State: closed - Opened by nh13 over 4 years ago

#63 - Add a type alias for a sequence dictionary

Pull Request - State: closed - Opened by nh13 over 4 years ago

#62 - Allow IoUtil trait's compressionLevel var to be settable by extending classes

Pull Request - State: closed - Opened by sstadick over 4 years ago - 3 comments

#62 - Allow IoUtil trait's compressionLevel var to be settable by extending classes

Pull Request - State: closed - Opened by sstadick over 4 years ago - 3 comments

#61 - Move automatic gzip detection from fgbio to commons.

Pull Request - State: closed - Opened by sstadick over 4 years ago - 6 comments

#61 - Move automatic gzip detection from fgbio to commons.

Pull Request - State: closed - Opened by sstadick over 4 years ago - 6 comments

#61 - Move automatic gzip detection from fgbio to commons.

Pull Request - State: closed - Opened by sstadick over 4 years ago - 6 comments

#60 - A lazy source.

Pull Request - State: closed - Opened by nh13 almost 5 years ago

#60 - A lazy source.

Pull Request - State: closed - Opened by nh13 almost 5 years ago

#59 - Add SystemUtil for querying common system properties

Pull Request - State: closed - Opened by clintval almost 5 years ago - 7 comments

#59 - Add SystemUtil for querying common system properties

Pull Request - State: closed - Opened by clintval almost 5 years ago - 7 comments

#59 - Add SystemUtil for querying common system properties

Pull Request - State: closed - Opened by clintval almost 5 years ago - 7 comments

#58 - Add a general CommandlineTool

Pull Request - State: closed - Opened by fangylo about 5 years ago - 4 comments

#58 - Add a general CommandlineTool

Pull Request - State: closed - Opened by fangylo about 5 years ago - 4 comments

#57 - Add support for reading from Unix/Posix pipes (fifos)

Pull Request - State: closed - Opened by nh13 about 5 years ago - 8 comments

#56 - Io.readLines should be able to read from a file descriptor

Issue - State: closed - Opened by nh13 about 5 years ago
Labels: bug

#55 - Bug fix: the thread name was not being set in AsyncRunnable

Pull Request - State: closed - Opened by nh13 about 5 years ago

#55 - Bug fix: the thread name was not being set in AsyncRunnable

Pull Request - State: closed - Opened by nh13 about 5 years ago

#55 - Bug fix: the thread name was not being set in AsyncRunnable

Pull Request - State: closed - Opened by nh13 about 5 years ago

#54 - Removes as many deprecations as I can while still cross-building

Pull Request - State: closed - Opened by tfenne about 5 years ago - 3 comments

#54 - Removes as many deprecations as I can while still cross-building

Pull Request - State: closed - Opened by tfenne about 5 years ago - 3 comments

#54 - Removes as many deprecations as I can while still cross-building

Pull Request - State: closed - Opened by tfenne about 5 years ago - 3 comments

#53 - Cleanup remaining deprecation warnings

Issue - State: open - Opened by nh13 about 5 years ago

#53 - Cleanup remaining deprecation warnings

Issue - State: open - Opened by nh13 about 5 years ago

#53 - Cleanup remaining deprecation warnings

Issue - State: open - Opened by nh13 about 5 years ago

#52 - Define commonly used Symbols in UnitSpec

Issue - State: open - Opened by nh13 about 5 years ago - 1 comment

#52 - Define commonly used Symbols in UnitSpec

Issue - State: open - Opened by nh13 about 5 years ago - 1 comment

#51 - Thread local and a test for BiMap

Pull Request - State: closed - Opened by nh13 about 5 years ago - 1 comment

#51 - Thread local and a test for BiMap

Pull Request - State: closed - Opened by nh13 about 5 years ago - 1 comment

#51 - Thread local and a test for BiMap

Pull Request - State: closed - Opened by nh13 about 5 years ago - 1 comment

#50 - Move support for gzipped files from fgbio.Io into commons.Io

Issue - State: closed - Opened by tfenne about 5 years ago

#49 - Attempting to move to cross-building 2.12 and 2.13, dropping 2.11.

Pull Request - State: closed - Opened by tfenne about 5 years ago - 1 comment

#49 - Attempting to move to cross-building 2.12 and 2.13, dropping 2.11.

Pull Request - State: closed - Opened by tfenne about 5 years ago - 1 comment

#49 - Attempting to move to cross-building 2.12 and 2.13, dropping 2.11.

Pull Request - State: closed - Opened by tfenne about 5 years ago - 1 comment

#48 - Changing to the mill build system

Pull Request - State: open - Opened by nh13 over 5 years ago - 2 comments

#47 - Change paths in coverage tests for sbt layout

Pull Request - State: closed - Opened by nvander1 over 5 years ago - 1 comment

#47 - Change paths in coverage tests for sbt layout

Pull Request - State: closed - Opened by nvander1 over 5 years ago - 1 comment

#46 - Add the sealedTraitOptions method to return the direct sub-classes of…

Pull Request - State: closed - Opened by nh13 over 5 years ago - 1 comment

#46 - Add the sealedTraitOptions method to return the direct sub-classes of…

Pull Request - State: closed - Opened by nh13 over 5 years ago - 1 comment

#46 - Add the sealedTraitOptions method to return the direct sub-classes of…

Pull Request - State: closed - Opened by nh13 over 5 years ago - 1 comment

#45 - DelimitedDataParser to accept a sequence of header names

Pull Request - State: closed - Opened by clintval over 5 years ago - 3 comments

#45 - DelimitedDataParser to accept a sequence of header names

Pull Request - State: closed - Opened by clintval over 5 years ago - 3 comments

#44 - Add FilenameSuffix type alias to CommonsDef

Pull Request - State: closed - Opened by clintval over 5 years ago - 2 comments

#44 - Add FilenameSuffix type alias to CommonsDef

Pull Request - State: closed - Opened by clintval over 5 years ago - 2 comments

#43 - Update scala point versions to support JDK 9 and 10.

Pull Request - State: closed - Opened by tfenne over 5 years ago - 1 comment

#43 - Update scala point versions to support JDK 9 and 10.

Pull Request - State: closed - Opened by tfenne over 5 years ago - 1 comment

#43 - Update scala point versions to support JDK 9 and 10.

Pull Request - State: closed - Opened by tfenne over 5 years ago - 1 comment

#42 - Make the parser faster when accessing field value as Strings.

Pull Request - State: closed - Opened by tfenne almost 6 years ago - 1 comment

#42 - Make the parser faster when accessing field value as Strings.

Pull Request - State: closed - Opened by tfenne almost 6 years ago - 1 comment

#42 - Make the parser faster when accessing field value as Strings.

Pull Request - State: closed - Opened by tfenne almost 6 years ago - 1 comment

#41 - Changed the type on DelimitedDataParser.apply() to TraversableOnce to…

Pull Request - State: closed - Opened by tfenne almost 6 years ago - 2 comments

#41 - Changed the type on DelimitedDataParser.apply() to TraversableOnce to…

Pull Request - State: closed - Opened by tfenne almost 6 years ago - 2 comments

#40 - AsyncSink and friends should throw an exception if used but not started

Issue - State: open - Opened by nh13 almost 6 years ago
Labels: enhancement

#40 - AsyncSink and friends should throw an exception if used but not started

Issue - State: open - Opened by nh13 almost 6 years ago
Labels: enhancement

#40 - AsyncSink and friends should throw an exception if used but not started

Issue - State: open - Opened by nh13 almost 6 years ago
Labels: enhancement

#39 - AsyncSink and friends should throw an exception if used but not started

Issue - State: open - Opened by nh13 almost 6 years ago

#39 - AsyncSink and friends should throw an exception if used but not started

Issue - State: open - Opened by nh13 almost 6 years ago

#39 - AsyncSink and friends should throw an exception if used but not started

Issue - State: open - Opened by nh13 almost 6 years ago

#38 - Bugfix: AsyncWriterPool may not propagate all exceptions.

Pull Request - State: closed - Opened by nh13 almost 6 years ago - 1 comment

#38 - Bugfix: AsyncWriterPool may not propagate all exceptions.

Pull Request - State: closed - Opened by nh13 almost 6 years ago - 1 comment

#37 - AsyncWriterPoolTest fails intermittently

Issue - State: closed - Opened by nh13 almost 6 years ago - 1 comment

#37 - AsyncWriterPoolTest fails intermittently

Issue - State: closed - Opened by nh13 almost 6 years ago - 1 comment

#36 - Workaround for Files.newInputStream() returning a stream that's incom…

Pull Request - State: closed - Opened by tfenne almost 6 years ago - 1 comment

#36 - Workaround for Files.newInputStream() returning a stream that's incom…

Pull Request - State: closed - Opened by tfenne almost 6 years ago - 1 comment

#36 - Workaround for Files.newInputStream() returning a stream that's incom…

Pull Request - State: closed - Opened by tfenne almost 6 years ago - 1 comment

#35 - A more general pooling mechanism for asynchronous writers.

Pull Request - State: closed - Opened by tfenne about 6 years ago - 2 comments

#35 - A more general pooling mechanism for asynchronous writers.

Pull Request - State: closed - Opened by tfenne about 6 years ago - 2 comments

#34 - A number of updates

Pull Request - State: closed - Opened by nh13 about 6 years ago - 4 comments

#34 - A number of updates

Pull Request - State: closed - Opened by nh13 about 6 years ago - 4 comments

#34 - A number of updates

Pull Request - State: closed - Opened by nh13 about 6 years ago - 4 comments

#33 - Added Io.readBytesFromResources() to read binary data.

Pull Request - State: closed - Opened by tfenne about 6 years ago - 1 comment

#33 - Added Io.readBytesFromResources() to read binary data.

Pull Request - State: closed - Opened by tfenne about 6 years ago - 1 comment

#33 - Added Io.readBytesFromResources() to read binary data.

Pull Request - State: closed - Opened by tfenne about 6 years ago - 1 comment

#32 - Support building an Either from string when it is type aliased and has an assoc object

Issue - State: open - Opened by nh13 over 6 years ago
Labels: enhancement

#32 - Support building an Either from string when it is type aliased and has an assoc object

Issue - State: open - Opened by nh13 over 6 years ago
Labels: enhancement

GitHub / fulcrumgenomics/commons issues and pull requests