Ecosyste.ms: Issues

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GitHub / fredjaya/rec-bench issues and pull requests

#25 - merge dev into master

Pull Request - State: closed - Opened by fredjaya over 4 years ago

#24 - F3_addCondition_genconv.py doesn't account for some files

Issue - State: closed - Opened by fredjaya almost 5 years ago - 1 comment

#23 - F2_addCondition_3SEQ.py doesn't process TPs properly

Issue - State: closed - Opened by fredjaya almost 5 years ago - 1 comment

#22 - parameters are lost?

Issue - State: closed - Opened by fredjaya about 5 years ago - 1 comment
Labels: bug

#21 - rebuild singularity images

Issue - State: closed - Opened by fredjaya over 5 years ago - 2 comments
Labels: high priority

#20 - .nf script - path to simg binary

Issue - State: closed - Opened by fredjaya over 5 years ago - 1 comment

#19 - 3seq simg doesn't build

Issue - State: closed - Opened by fredjaya over 5 years ago - 5 comments

#18 - add test for phi.simg installation

Issue - State: closed - Opened by fredjaya over 5 years ago - 1 comment
Labels: low priority, test

#17 - hpc run terminates despite pbs resource being specified

Issue - State: closed - Opened by fredjaya over 5 years ago - 3 comments

#17 - hpc run terminates despite pbs resource being specified

Issue - State: closed - Opened by fredjaya over 5 years ago - 3 comments

#16 - initial HPC testing and analysis of original, NGS data

Pull Request - State: closed - Opened by fredjaya over 5 years ago

#15 - fail to pull images via qsub

Issue - State: closed - Opened by fredjaya over 5 years ago - 2 comments

#14 - santa-sim population size limit?

Issue - State: closed - Opened by fredjaya over 5 years ago

#13 - refine unit tests for fasta_preprocess.py

Issue - State: closed - Opened by fredjaya over 5 years ago - 2 comments
Labels: low priority, test

#12 - Inputting paired simulation outputs into cfml

Issue - State: closed - Opened by fredjaya over 5 years ago - 6 comments
Labels: wontfix

#11 - summary script - account for failed PhiPack outputs

Issue - State: closed - Opened by fredjaya over 5 years ago - 1 comment
Labels: wontfix

#10 - Dev

Pull Request - State: closed - Opened by fredjaya almost 6 years ago

#9 - RDM processes don't output multiple files

Issue - State: closed - Opened by fredjaya almost 6 years ago

#8 - Saving empirical.nf and main.nf

Pull Request - State: closed - Opened by fredjaya almost 6 years ago

#7 - uchime gaps

Issue - State: closed - Opened by fredjaya almost 6 years ago - 2 comments

#6 - tree input for clonalframeml

Issue - State: closed - Opened by fredjaya almost 6 years ago - 1 comment

#4 - PhiPack - too few informative sites

Issue - State: closed - Opened by fredjaya almost 6 years ago

#4 - PhiPack - too few informative sites

Issue - State: closed - Opened by fredjaya almost 6 years ago

#3 - simulation produces no viable children

Issue - State: closed - Opened by fredjaya almost 6 years ago - 1 comment

#2 - Create docker image for pipeline

Issue - State: closed - Opened by fredjaya almost 6 years ago - 2 comments

#1 - 3seq pvalue table

Issue - State: closed - Opened by fredjaya almost 6 years ago - 1 comment