fredhutch/visctemplates issues and pull requests

#94 - New vignette on how to create an analysis project

Pull Request - State: closed - Opened by monicagerber about 3 years ago

#93 - Update the existing vignette to incorporate changes from PR #88.

Pull Request - State: closed - Opened by monicagerber about 3 years ago - 3 comments

#92 - Update report README

Issue - State: open - Opened by monicagerber about 3 years ago - 2 comments

#91 - Update "Using the PDF and Word Output Template" vignette

Issue - State: closed - Opened by monicagerber about 3 years ago

#90 - Create vignette for project workflow

Issue - State: closed - Opened by monicagerber about 3 years ago

#89 - Update project README

Issue - State: closed - Opened by monicagerber about 3 years ago

#88 - Feature/bama template

Pull Request - State: closed - Opened by monicagerber about 3 years ago

#87 - test GitHub actions working for new PRs

Pull Request - State: closed - Opened by wfulp about 3 years ago

#86 - Feature/GitHub actions

Pull Request - State: closed - Opened by monicagerber about 3 years ago - 5 comments

#85 - Feature/gitignore zip

Pull Request - State: closed - Opened by monicagerber about 3 years ago

#84 - Add GitHub Actions

Issue - State: closed - Opened by monicagerber about 3 years ago

#83 - Update R citation

Pull Request - State: closed - Opened by monicagerber about 3 years ago

#82 - Simplify and correct template

Pull Request - State: closed - Opened by monicagerber about 3 years ago - 2 comments

#81 - Turn study-schema.R into an actual function

Pull Request - State: closed - Opened by monicagerber about 3 years ago - 1 comment

#80 - Remove SST table in project-level README

Issue - State: closed - Opened by monicagerber over 3 years ago - 1 comment

#79 - Rearrange template .R files

Issue - State: closed - Opened by monicagerber over 3 years ago

#78 - Add new checks for project name and existence of directory

Pull Request - State: closed - Opened by monicagerber over 3 years ago
Labels: enhancement

#77 - Error with use_visc_docs()

Issue - State: closed - Opened by monicagerber over 3 years ago - 3 comments
Labels: bug

#76 - Add `\sloppy` so that text does not spill into margin. Addresses #71.

Pull Request - State: closed - Opened by monicagerber over 3 years ago - 1 comment

#75 - NAb specific assay template

Issue - State: closed - Opened by monicagerber over 3 years ago - 1 comment

#74 - Update rlang citation

Pull Request - State: closed - Opened by monicagerber over 3 years ago - 1 comment

#73 - Remove WORDLIST

Issue - State: closed - Opened by monicagerber almost 4 years ago - 1 comment

#72 - Update README to use `main` instead of `master

Issue - State: closed - Opened by monicagerber almost 4 years ago

#71 - Adding \sloppy so antigen names don't spill into margin

Issue - State: closed - Opened by wfulp almost 4 years ago
Labels: enhancement

#70 - Opt out

Issue - State: closed - Opened by thebioengineer almost 4 years ago - 5 comments

#69 - Hotfix/0.3.3

Pull Request - State: closed - Opened by wfulp almost 4 years ago

#68 - Feature: Pre-processing template for Monolix

Pull Request - State: closed - Opened by monicagerber almost 4 years ago

#67 - Word document numbering happens twice on new Pandoc versions

Issue - State: closed - Opened by wfulp about 4 years ago - 2 comments
Labels: bug, good first issue

#66 - Function to bold titles(i.e. first sentence) in fig.cap (for pdf)

Issue - State: open - Opened by wfulp about 4 years ago
Labels: enhancement

#65 - Add ability to include extra latex packages

Issue - State: closed - Opened by wfulp about 4 years ago - 1 comment
Labels: enhancement

#64 - Fixing cls issue

Pull Request - State: closed - Opened by wfulp about 4 years ago - 2 comments

#63 - Add *.zip to gitignore file that gets created

Issue - State: closed - Opened by wfulp about 4 years ago - 1 comment

#62 - Fixed biber/bibtex issue with pdf output, updated news and version

Pull Request - State: closed - Opened by wfulp about 4 years ago

#61 - Release v0.3.0

Pull Request - State: closed - Opened by monicagerber over 4 years ago - 2 comments

#60 - Setting biber as the bib engine

Pull Request - State: closed - Opened by wfulp over 4 years ago - 2 comments

#59 - Fixing readme.rmd

Pull Request - State: closed - Opened by wfulp over 4 years ago

#58 - Switching to remotes in Readme

Pull Request - State: closed - Opened by wfulp over 4 years ago

#57 - Update README: vignette missing

Pull Request - State: closed - Opened by rkuttnerFHCR over 4 years ago - 8 comments

#56 - Fix footnote hyperlink issue

Pull Request - State: closed - Opened by wfulp over 4 years ago

#55 - Footnotes link to titlepage

Issue - State: closed - Opened by wfulp over 4 years ago
Labels: bug

#54 - Adding to gitignore file

Pull Request - State: closed - Opened by wfulp over 4 years ago

#53 - Feature/barebones report

Pull Request - State: closed - Opened by wfulp over 4 years ago - 2 comments

#52 - Add "**/figure-docx/*.pdf" to .gitignore template

Issue - State: closed - Opened by monicagerber over 4 years ago

#51 - function to generate report files and folder

Issue - State: closed - Opened by mayerbry over 4 years ago - 3 comments
Labels: enhancement

#50 - Creating project-level bib file and use that bib file if possible

Pull Request - State: closed - Opened by wfulp over 4 years ago - 2 comments

#49 - Allow for dynamic section references for latex and word (resolves #48)

Pull Request - State: closed - Opened by wfulp over 4 years ago

#48 - Allow for dynamic section references for latex and word

Issue - State: closed - Opened by wfulp over 4 years ago - 1 comment
Labels: enhancement

#47 - Release v0.2.0

Pull Request - State: closed - Opened by monicagerber over 4 years ago

#46 - Release v0.1.3

Pull Request - State: closed - Opened by monicagerber over 4 years ago

#45 - barebones template for non-standard reports (and SAPs)

Issue - State: closed - Opened by mayerbry over 4 years ago - 1 comment
Labels: enhancement

#44 - Adding cslreferences environment in template

Pull Request - State: closed - Opened by wfulp over 4 years ago - 1 comment

#43 - Updating report checklist that shows up in pull requests.

Pull Request - State: closed - Opened by wfulp over 4 years ago - 6 comments

#42 - add PT report checklist from scharp templates

Issue - State: closed - Opened by celiaeddy over 4 years ago - 8 comments

#41 - Adding leftheader YAML param for ability customize left header in Reports

Pull Request - State: closed - Opened by wfulp over 4 years ago - 3 comments

#40 - Feature/move functions

Pull Request - State: closed - Opened by monicagerber almost 5 years ago

#39 - Feature/update readmes

Pull Request - State: closed - Opened by monicagerber almost 5 years ago

#38 - Release v0.1.1

Pull Request - State: closed - Opened by monicagerber almost 5 years ago - 1 comment

#37 - updated adding teams for GitHub update

Pull Request - State: closed - Opened by mayerbry almost 5 years ago

#36 - Change "GITHUB_KEY" to "GITHUB_PAT" in README template

Issue - State: closed - Opened by monicagerber almost 5 years ago - 1 comment

#35 - Add Package Version Management with renv

Issue - State: open - Opened by wfulp about 5 years ago - 5 comments
Labels: enhancement

#34 - Add ability to remove VISC logo from reports

Pull Request - State: closed - Opened by wfulp about 5 years ago

#33 - Add dvipsnames when loading xcolor.

Pull Request - State: closed - Opened by mariev about 5 years ago

#32 - modify template.tex call to dvipsnames

Issue - State: closed - Opened by mariev about 5 years ago - 1 comment

#31 - Add a code of conduct file

Pull Request - State: closed - Opened by monicagerber about 5 years ago

#30 - Add contribution guidelines

Pull Request - State: closed - Opened by monicagerber about 5 years ago

#29 - Move code out of template skeleton and into R folder where possible

Issue - State: closed - Opened by wfulp about 5 years ago - 2 comments

#28 - Create Log Report with PDF/Word template

Issue - State: open - Opened by wfulp over 5 years ago - 5 comments

#27 - integrate the pk template

Issue - State: closed - Opened by mayerbry over 5 years ago

#26 - Text edits for process clarity

Pull Request - State: closed - Opened by seajane over 5 years ago

#25 - Skeleton Readme Needs an Update (i.e. Links)

Issue - State: closed - Opened by wfulp over 5 years ago - 1 comment

#24 - V0.1.0 release into develop

Pull Request - State: closed - Opened by wfulp over 5 years ago

#23 - V0.1.0

Pull Request - State: closed - Opened by monicagerber over 5 years ago

#22 - Feature/logos in package

Pull Request - State: closed - Opened by wfulp over 5 years ago - 2 comments

#21 - Update writing in PT report template

Issue - State: closed - Opened by monicagerber over 5 years ago - 1 comment

#20 - Can we use master files (i.e. bib, tex, logos) across all templates

Issue - State: closed - Opened by wfulp over 5 years ago - 2 comments

#19 - Create new vignette for setting up directory structure

Issue - State: closed - Opened by monicagerber over 5 years ago

#18 - Move Vignette from scharpTemplates to VISCtemplates

Issue - State: closed - Opened by monicagerber over 5 years ago - 1 comment

#17 - CONTRIBUTING.md

Issue - State: closed - Opened by monicagerber over 5 years ago

#16 - Assay-specific templates

Issue - State: closed - Opened by monicagerber over 5 years ago - 1 comment

#15 - Feature/pdf word template

Pull Request - State: closed - Opened by wfulp over 5 years ago - 3 comments

#14 - Feature/pdf word template

Pull Request - State: closed - Opened by wfulp over 5 years ago - 1 comment

#13 - Checking for empty folder when making new project

Issue - State: closed - Opened by wfulp over 5 years ago - 1 comment

#12 - Adding to gitignore file

Issue - State: closed - Opened by wfulp over 5 years ago - 3 comments

#11 - Instructions for vidd-visc team and branch protection

Issue - State: closed - Opened by monicagerber over 5 years ago - 3 comments

#10 - Merge basic package structure from develop to master

Pull Request - State: closed - Opened by monicagerber over 5 years ago - 2 comments

#9 - Feature/template package

Pull Request - State: closed - Opened by monicagerber over 5 years ago

#8 - Code/function for study time points

Issue - State: closed - Opened by monicagerber over 5 years ago

#7 - Code/function for setting group names and colors

Issue - State: closed - Opened by monicagerber over 5 years ago - 1 comment

#6 - VISC spell check

Issue - State: closed - Opened by monicagerber over 5 years ago - 2 comments

#5 - Check study name and path

Issue - State: closed - Opened by monicagerber over 5 years ago - 2 comments
Labels: enhancement

#4 - Add SAP template

Issue - State: open - Opened by wfulp over 5 years ago - 1 comment
Labels: enhancement

#3 - Add PDF/Word template

Issue - State: closed - Opened by wfulp over 5 years ago - 2 comments
Labels: enhancement

#2 - Add *.gitignore and .rproj files with create_compendium()

Issue - State: closed - Opened by wfulp over 5 years ago
Labels: enhancement

#1 - Overview of new package

Issue - State: closed - Opened by monicagerber over 5 years ago - 3 comments

GitHub / fredhutch/visctemplates issues and pull requests