Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / fredhutch/visctemplates issues and pull requests

#250 - Auto-calculate unit test coverage on PRs and view results on Codecov

Pull Request - State: open - Opened by slager 3 months ago - 2 comments

#249 - Fix error running package-loading-and-options chunk interactively

Pull Request - State: open - Opened by slager 3 months ago - 1 comment

#247 - invalid ORCID error on r-devel

Issue - State: closed - Opened by slager 3 months ago

#246 - Get confirmation for ADCC Template language from lab

Issue - State: open - Opened by lemireg 3 months ago

#245 - ldap warnings in Linux and macOS unit tests

Issue - State: closed - Opened by slager 4 months ago - 1 comment

#244 - Add automatic dates at the end of QC report

Issue - State: closed - Opened by Sal4321 4 months ago - 3 comments

#240 - Add ref = "" in data package installation chunk

Issue - State: open - Opened by kelliemac 5 months ago

#238 - Using git tags

Issue - State: open - Opened by kelliemac 5 months ago

#235 - Add visc_load_pdata() to visc_report skeleton.Rmd

Issue - State: open - Opened by kelliemac 5 months ago

#234 - Update acknowledgements names

Pull Request - State: closed - Opened by kelliemac 5 months ago

#233 - Move README creation for PT reports to assay level

Pull Request - State: open - Opened by kelliemac 5 months ago - 1 comment

#232 - remove name(s) from acknowledgements section for ppl who are not here

Issue - State: open - Opened by lemireg 5 months ago
Labels: in progress

#231 - Update PR template to be more comprehensive and usable

Pull Request - State: open - Opened by kelliemac 5 months ago - 5 comments

#230 - Update gitignore

Pull Request - State: closed - Opened by kelliemac 5 months ago

#229 - Change name of methods/ folder

Issue - State: open - Opened by kelliemac 5 months ago - 2 comments

#228 - Update pull request template

Issue - State: open - Opened by kelliemac 5 months ago - 1 comment
Labels: in progress

#226 - latex template fix to allow flextable to render tables

Pull Request - State: closed - Opened by kelliemac 6 months ago - 1 comment

#225 - Suggest nested directory structure

Issue - State: open - Opened by kelliemac 6 months ago

#224 - add unit tests for README changes

Pull Request - State: closed - Opened by slager 6 months ago

#223 - README.md instead of README.Rmd

Pull Request - State: closed - Opened by slager 6 months ago

#222 - Update git commit hash to short hash within Software-Package-Version-Information R chunk

Issue - State: closed - Opened by brborate 6 months ago - 2 comments
Labels: duplicate

#221 - Add adcc test knit to ci

Pull Request - State: closed - Opened by slager 6 months ago - 1 comment

#220 - ADCC combined GTL and luciferase template

Pull Request - State: closed - Opened by lemireg 6 months ago - 1 comment

#219 - Add auxillary files (.aux, .toc, etc) to .gitignore

Issue - State: closed - Opened by asatofh 6 months ago - 1 comment

#218 - provide default CRAN mirror if missing in knitr R session

Pull Request - State: closed - Opened by slager 6 months ago - 1 comment

#217 - Release 1.3.2 patch release

Issue - State: closed - Opened by slager 6 months ago

#216 - Hotfix: change \newpage to \clearpage

Pull Request - State: closed - Opened by kelliemac 6 months ago - 3 comments

#214 - Creates README.Rmd instead of README.md in new directory

Issue - State: closed - Opened by lemireg 6 months ago - 3 comments

#213 - Remove dependency on full tidyverse

Pull Request - State: closed - Opened by slager 6 months ago - 1 comment

#212 - Improve word doc formatting

Pull Request - State: open - Opened by kelliemac 6 months ago - 13 comments

#209 - Abbreviate commit hash in reproducibility table

Issue - State: closed - Opened by kelliemac 6 months ago - 2 comments

#206 - Release VISCtemplates 1.3.1 patch release

Issue - State: closed - Opened by slager 6 months ago

#205 - Re-flip header logos

Pull Request - State: closed - Opened by slager 6 months ago - 2 comments

#204 - Reconcile skeleton.Rmd files

Pull Request - State: closed - Opened by kelliemac 6 months ago

#202 - Update PT report naming practices

Pull Request - State: closed - Opened by kelliemac 6 months ago

#201 - Release VISCtemplates 1.3.0

Issue - State: closed - Opened by slager 6 months ago

#200 - Create a medium term vision

Issue - State: open - Opened by lemireg 6 months ago - 3 comments

#199 - ics template attempt

Pull Request - State: closed - Opened by slager 6 months ago

#198 - ICS template

Issue - State: open - Opened by slager 6 months ago

#197 - Update NEWS for 1.3.0 release

Pull Request - State: closed - Opened by slager 6 months ago - 1 comment

#196 - latex template cleanup

Pull Request - State: closed - Opened by kelliemac 6 months ago - 1 comment

#195 - Update header logo

Pull Request - State: closed - Opened by slager 6 months ago - 2 comments

#194 - Additional mock datasets for bama, nab, adcc, etc.

Issue - State: open - Opened by kelliemac 7 months ago - 1 comment

#193 - CI testing only, do not merge

Pull Request - State: closed - Opened by slager 7 months ago

#192 - Tweak test order

Pull Request - State: closed - Opened by slager 7 months ago

#190 - Update authors in DESCRIPTION

Pull Request - State: closed - Opened by kelliemac 7 months ago - 5 comments

#189 - Note nab template existence in documentation

Pull Request - State: closed - Opened by kelliemac 7 months ago - 1 comment

#188 - Fix insert_break() and replace with \newpage

Pull Request - State: closed - Opened by slager 7 months ago

#187 - make R CMD check (including CI) fail on test warnings

Pull Request - State: closed - Opened by slager 7 months ago

#186 - Avoid forcing 3 objects into the user's .GlobalEnv

Pull Request - State: closed - Opened by slager 7 months ago - 3 comments

#185 - change broken PAT setup link to working SSH key setup link

Pull Request - State: closed - Opened by kelliemac 7 months ago - 1 comment

#184 - universal install_git for network drives

Issue - State: open - Opened by mayerbry 7 months ago - 1 comment

#183 - Improve word document formatting, including table formatting

Pull Request - State: closed - Opened by kelliemac 7 months ago - 9 comments

#182 - Fix warnings during knitting

Pull Request - State: closed - Opened by slager 7 months ago

#181 - Automating some of the report QC steps

Issue - State: open - Opened by kelliemac 7 months ago - 3 comments

#180 - Update authors in description file

Issue - State: closed - Opened by kelliemac 7 months ago - 1 comment

#174 - Warnings when knitting report templates

Issue - State: closed - Opened by slager 7 months ago - 1 comment

#171 - Update SCHARP logo

Issue - State: closed - Opened by asatofh 7 months ago

#170 - Reminder to tweak snapshots upload method

Issue - State: closed - Opened by slager 7 months ago - 1 comment

#169 - CI check for #168

Pull Request - State: closed - Opened by slager 7 months ago - 5 comments

#162 - insert_break() not working for Word output

Issue - State: closed - Opened by kelliemac 8 months ago - 5 comments

#161 - Spring cleaning for template.tex

Issue - State: closed - Opened by kelliemac 8 months ago

#158 - Create a participant cohort section template

Issue - State: open - Opened by asatofh 8 months ago - 5 comments
Labels: template text

#155 - Specify default colors and shapes for figures

Issue - State: open - Opened by kelliemac 8 months ago - 3 comments
Labels: in progress

#141 - Nicer formatting for report .docx files

Pull Request - State: closed - Opened by kelliemac 10 months ago - 6 comments

#129 - Include checks for data version, branch, sha and data hash in template script

Pull Request - State: closed - Opened by Sal4321 11 months ago - 3 comments

#126 - Add/create templates for ADCC LUC and GTL methods (PR #109)

Issue - State: open - Opened by asatofh 11 months ago
Labels: template text, in progress

#121 - Add VISC slide (PPT) template

Issue - State: closed - Opened by kelliemac over 1 year ago - 2 comments
Labels: enhancement

#120 - Improve docx table formatting, standardize and functionalize across pdf/docx

Issue - State: open - Opened by kelliemac over 1 year ago - 12 comments
Labels: in progress

#119 - document with general report tips

Issue - State: open - Opened by mayerbry over 1 year ago - 3 comments
Labels: enhancement

#113 - Update NAb methods: presentation of statistical endpoints

Issue - State: open - Opened by brborate almost 2 years ago - 3 comments
Labels: template text

#109 - ADCC GTL & Luciferase template

Pull Request - State: closed - Opened by ruizhw19 over 2 years ago - 3 comments

#108 - Add tests for data version, sha, and branch

Issue - State: closed - Opened by celiaeddy over 2 years ago - 1 comment
Labels: enhancement

#107 - Update using_pdf_and_word_template vignette to include nab template

Issue - State: closed - Opened by mayerbry over 2 years ago - 1 comment
Labels: package documentation

#104 - Update visc analysis project vignette for SSH protocol

Issue - State: closed - Opened by at-crx over 2 years ago - 1 comment
Labels: package documentation

#101 - Update existing templates to provide more guidance on unblinded vs. blinded reports

Issue - State: open - Opened by monicagerber almost 3 years ago - 2 comments
Labels: enhancement

#100 - Add check and guidance on PT report naming convention

Pull Request - State: closed - Opened by monicagerber about 3 years ago

#99 - NAb template draft

Pull Request - State: closed - Opened by monicagerber about 3 years ago - 3 comments

#98 - Incorporate Alicia's guidance on PT report naming into package

Issue - State: closed - Opened by monicagerber about 3 years ago - 4 comments
Labels: enhancement

#97 - Release 1.0.0

Pull Request - State: closed - Opened by monicagerber about 3 years ago

#96 - Update README template to address #95

Pull Request - State: closed - Opened by monicagerber about 3 years ago

#95 - Remove "Lab Spec." "Data Spec." from report README?

Issue - State: closed - Opened by monicagerber about 3 years ago - 2 comments