fredhutch/easybuild-life-sciences issues and pull requests

#562 - Please install `paws` as part of `fhR` modules

Issue - State: open - Opened by dtenenba 4 months ago

#561 - Request Flair long read RNA-seq transcriptome assembler

Issue - State: open - Opened by srbennett 6 months ago - 1 comment

#560 - RStudio Server does not have some dependencies set up properly

Issue - State: open - Opened by dtenenba 6 months ago

#559 - Request to install R packages

Issue - State: closed - Opened by pmorzywolek 7 months ago - 1 comment

#558 - Problem with the bootstrap script

Issue - State: closed - Opened by rmarable-flaretx 7 months ago - 2 comments

#557 - MultiQC/1.21-foss-2023a-Python-3.11.3 is broken

Issue - State: closed - Opened by juyeongkim 9 months ago - 2 comments

#556 - speed up module loading and purging

Issue - State: open - Opened by dtenenba 10 months ago - 1 comment

#556 - speed up module loading and purging

Issue - State: open - Opened by dtenenba 10 months ago - 1 comment

#555 - Upgrade RStudio Server to add Quarto support

Issue - State: closed - Opened by dtenenba 11 months ago - 1 comment

#554 - document foss-2023a toolchain

Pull Request - State: closed - Opened by dtenenba 11 months ago

#554 - document foss-2023a toolchain

Pull Request - State: closed - Opened by dtenenba 11 months ago

#553 - Update module - Xenium Ranger 1.7

Issue - State: closed - Opened by rachael-z 11 months ago - 2 comments

#553 - Update module - Xenium Ranger 1.7

Issue - State: closed - Opened by rachael-z 11 months ago - 2 comments

#552 - Request an R package, ChIPQC

Issue - State: closed - Opened by hwt010825 12 months ago - 2 comments

#552 - Request an R package, ChIPQC

Issue - State: closed - Opened by hwt010825 12 months ago - 2 comments

#551 - add module - XeniumRanger 1.7

Issue - State: closed - Opened by rachael-z 12 months ago - 1 comment

#551 - add module - XeniumRanger 1.7

Issue - State: closed - Opened by rachael-z 12 months ago - 1 comment

#550 - update toolchains, versions and resubmit to EB

Issue - State: closed - Opened by fizwit about 1 year ago - 1 comment

#550 - update toolchains, versions and resubmit to EB

Issue - State: closed - Opened by fizwit about 1 year ago - 1 comment

#549 - Updated Module Request: Kallisto v0.50.1

Issue - State: closed - Opened by srbennett about 1 year ago - 2 comments

#549 - Updated Module Request: Kallisto v0.50.1

Issue - State: closed - Opened by srbennett about 1 year ago - 2 comments

#548 - Diagram fix

Pull Request - State: closed - Opened by dtenenba about 1 year ago

#548 - Diagram fix

Pull Request - State: closed - Opened by dtenenba about 1 year ago

#547 - Module Request: Updated AlphaFold + AlphaPulldown

Issue - State: closed - Opened by crownedeagle over 1 year ago - 1 comment

#547 - Module Request: Updated AlphaFold + AlphaPulldown

Issue - State: closed - Opened by crownedeagle over 1 year ago - 1 comment

#546 - PostgreSQL/15.2-GCCcore-12.2.0 is broken

Issue - State: closed - Opened by dtenenba over 1 year ago - 1 comment

#546 - PostgreSQL/15.2-GCCcore-12.2.0 is broken

Issue - State: closed - Opened by dtenenba over 1 year ago - 1 comment

#545 - fhR/4.2.2.1-foss-2021b is broken

Issue - State: closed - Opened by dtenenba over 1 year ago - 1 comment

#545 - fhR/4.2.2.1-foss-2021b is broken

Issue - State: closed - Opened by dtenenba over 1 year ago - 1 comment

#544 - Update Modules - foss/2022b

Issue - State: closed - Opened by fizwit almost 2 years ago - 1 comment

#544 - Update Modules - foss/2022b

Issue - State: closed - Opened by fizwit almost 2 years ago - 1 comment

#543 - module nextflow/23.04.0 not working

Issue - State: closed - Opened by SarahNadeau almost 2 years ago - 1 comment

#543 - module nextflow/23.04.0 not working

Issue - State: closed - Opened by SarahNadeau almost 2 years ago - 1 comment

#542 - install newer nextflow version

Issue - State: closed - Opened by SarahNadeau almost 2 years ago - 3 comments

#542 - install newer nextflow version

Issue - State: closed - Opened by SarahNadeau almost 2 years ago - 3 comments

#541 - sashimi_plot in misopy package is broken

Issue - State: closed - Opened by dtenenba almost 2 years ago - 1 comment

#541 - sashimi_plot in misopy package is broken

Issue - State: closed - Opened by dtenenba almost 2 years ago - 1 comment

#540 - MEME update request

Issue - State: closed - Opened by alisongr almost 2 years ago - 1 comment
Labels: update

#540 - MEME update request

Issue - State: closed - Opened by alisongr almost 2 years ago - 1 comment
Labels: update

#539 - Change colors!!!

Pull Request - State: closed - Opened by vortexing about 2 years ago

#539 - Change colors!!!

Pull Request - State: closed - Opened by vortexing about 2 years ago

#538 - typo in cromwell/84

Issue - State: closed - Opened by jayoung about 2 years ago - 2 comments

#538 - typo in cromwell/84

Issue - State: closed - Opened by jayoung about 2 years ago - 2 comments

#537 - Installing the latest version of Cutadapt: v4.1

Issue - State: closed - Opened by kalavattam about 2 years ago - 1 comment

#537 - Installing the latest version of Cutadapt: v4.1

Issue - State: closed - Opened by kalavattam about 2 years ago - 1 comment

#536 - Installing PASA

Issue - State: closed - Opened by kalavattam about 2 years ago - 5 comments

#536 - Installing PASA

Issue - State: closed - Opened by kalavattam about 2 years ago - 5 comments

#535 - Installing the latest version of Trinity: v2.14.0

Issue - State: closed - Opened by kalavattam about 2 years ago - 1 comment

#535 - Installing the latest version of Trinity: v2.14.0

Issue - State: closed - Opened by kalavattam about 2 years ago - 1 comment

#534 - Add pubweb v0.3.9

Pull Request - State: closed - Opened by sminot over 2 years ago - 1 comment

#534 - Add pubweb v0.3.9

Pull Request - State: closed - Opened by sminot over 2 years ago - 1 comment

#533 - PubWeb-CLI

Issue - State: closed - Opened by sminot over 2 years ago

#533 - PubWeb-CLI

Issue - State: closed - Opened by sminot over 2 years ago

#532 - Update Annovar

Issue - State: closed - Opened by cmills2 over 2 years ago - 1 comment

#532 - Update Annovar

Issue - State: closed - Opened by cmills2 over 2 years ago - 1 comment

#531 - add bioconductor archive source_url?

Issue - State: closed - Opened by migueldiascosta over 2 years ago - 1 comment

#531 - add bioconductor archive source_url?

Issue - State: closed - Opened by migueldiascosta over 2 years ago - 1 comment

#530 - warning (case insensitive filesystem) when cloning repo on a mac

Issue - State: closed - Opened by dtenenba over 2 years ago - 1 comment

#530 - warning (case insensitive filesystem) when cloning repo on a mac

Issue - State: closed - Opened by dtenenba over 2 years ago - 1 comment

#529 - Bump codecov from 2.0.5 to 2.0.16 in /fh_easyconfigs/b/basicfiltering

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#529 - Bump codecov from 2.0.5 to 2.0.16 in /fh_easyconfigs/b/basicfiltering

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#528 - install podman

Issue - State: closed - Opened by dtenenba over 2 years ago - 2 comments

#528 - install podman

Issue - State: closed - Opened by dtenenba over 2 years ago - 2 comments

#527 - Nextflow version

Issue - State: closed - Opened by happyfox-robot over 2 years ago - 2 comments
Labels: Nextflow

#527 - Nextflow version

Issue - State: closed - Opened by happyfox-robot over 2 years ago - 2 comments
Labels: Nextflow

#526 - : ArrayFire for rhino

Issue - State: closed - Opened by happyfox-robot over 2 years ago - 1 comment

#526 - : ArrayFire for rhino

Issue - State: closed - Opened by happyfox-robot over 2 years ago - 1 comment

#525 - : DIHVA module creation

Issue - State: closed - Opened by happyfox-robot almost 3 years ago - 22 comments
Labels: module

#525 - : DIHVA module creation

Issue - State: closed - Opened by happyfox-robot almost 3 years ago - 22 comments
Labels: module

#524 - : IgBLAST module update to version 1.18

Issue - State: closed - Opened by happyfox-robot almost 3 years ago - 1 comment

#524 - : IgBLAST module update to version 1.18

Issue - State: closed - Opened by happyfox-robot almost 3 years ago - 1 comment

#523 - deeptools 3.5.1-foss-2021b missing dependency

Issue - State: closed - Opened by alisoncg24 almost 3 years ago - 1 comment

#523 - deeptools 3.5.1-foss-2021b missing dependency

Issue - State: closed - Opened by alisoncg24 almost 3 years ago - 1 comment

#522 - Update to deepTools

Issue - State: closed - Opened by alisoncg24 almost 3 years ago - 1 comment

#522 - Update to deepTools

Issue - State: closed - Opened by alisoncg24 almost 3 years ago - 1 comment

#521 - : Question regarding installing PATRIC on Gizmo

Issue - State: closed - Opened by happyfox-robot almost 3 years ago - 1 comment

#521 - : Question regarding installing PATRIC on Gizmo

Issue - State: closed - Opened by happyfox-robot almost 3 years ago - 1 comment

#520 - : GATK module

Issue - State: closed - Opened by happyfox-robot almost 3 years ago - 1 comment
Labels: GATK

#520 - : GATK module

Issue - State: closed - Opened by happyfox-robot almost 3 years ago - 1 comment
Labels: GATK

#519 - IgBLAST not seeing $IGDATA to find internal_data directory

Issue - State: closed - Opened by moduff almost 3 years ago - 1 comment

#519 - IgBLAST not seeing $IGDATA to find internal_data directory

Issue - State: closed - Opened by moduff almost 3 years ago - 1 comment

#518 - BALDR install alternatives (Docker?)

Issue - State: closed - Opened by moduff almost 3 years ago

#518 - BALDR install alternatives (Docker?)

Issue - State: closed - Opened by moduff almost 3 years ago

#517 - BALDR module install request

Issue - State: closed - Opened by moduff almost 3 years ago - 4 comments

#517 - BALDR module install request

Issue - State: closed - Opened by moduff almost 3 years ago - 4 comments

#516 - quast bug fix

Issue - State: closed - Opened by jayoung about 3 years ago - 6 comments

#516 - quast bug fix

Issue - State: closed - Opened by jayoung about 3 years ago - 6 comments

#515 - R builds fhR 4.1.2 and 4.1.1 - Illegal instruction

Issue - State: closed - Opened by jayoung about 3 years ago - 3 comments

#515 - R builds fhR 4.1.2 and 4.1.1 - Illegal instruction

Issue - State: closed - Opened by jayoung about 3 years ago - 3 comments

#514 - : scikit-learn version 0.24.1

Issue - State: closed - Opened by happyfox-robot about 3 years ago - 1 comment

#514 - : scikit-learn version 0.24.1

Issue - State: closed - Opened by happyfox-robot about 3 years ago - 1 comment

#513 - : cmake 3.19

Issue - State: closed - Opened by happyfox-robot about 3 years ago - 1 comment
Labels: crmake

#513 - : cmake 3.19

Issue - State: closed - Opened by happyfox-robot about 3 years ago - 1 comment
Labels: crmake

#512 - more recent version of Go language?

Issue - State: closed - Opened by dtenenba about 3 years ago - 3 comments

#512 - more recent version of Go language?

Issue - State: closed - Opened by dtenenba about 3 years ago - 3 comments

#511 - add Keyring to for

Issue - State: closed - Opened by fizwit over 3 years ago - 1 comment
Labels: module

#511 - add Keyring to for

Issue - State: closed - Opened by fizwit over 3 years ago - 1 comment
Labels: module

#510 - need latest nextflow installed

Issue - State: closed - Opened by dtenenba over 3 years ago - 2 comments
Labels: software install

#510 - need latest nextflow installed

Issue - State: closed - Opened by dtenenba over 3 years ago - 2 comments
Labels: software install

#509 - GATK version 4.2.2.0 ?

Issue - State: closed - Opened by jayoung over 3 years ago - 2 comments

GitHub / fredhutch/easybuild-life-sciences issues and pull requests