fredhutch/batchman issues and pull requests

#48 - Template wizard launcher uses github CDN, which does not update immediately after push

Issue - State: open - Opened by nkrumm about 5 years ago

#47 - event notification

Issue - State: open - Opened by nkrumm about 5 years ago - 1 comment
Labels: need for prod use

#47 - event notification

Issue - State: open - Opened by nkrumm about 5 years ago - 1 comment
Labels: need for prod use

#46 - Force page refresh after authentication timeout

Issue - State: open - Opened by nkrumm about 5 years ago - 2 comments

#46 - Force page refresh after authentication timeout

Issue - State: open - Opened by nkrumm about 5 years ago - 2 comments

#45 - variable substitution in template?

Issue - State: open - Opened by nkrumm about 5 years ago - 2 comments
Labels: need for prod use

#45 - variable substitution in template?

Issue - State: open - Opened by nkrumm about 5 years ago - 2 comments
Labels: need for prod use

#44 - feature suggestion: default to a profile named "batchman" if it exists

Issue - State: closed - Opened by nkrumm about 5 years ago
Labels: need for prod use

#44 - feature suggestion: default to a profile named "batchman" if it exists

Issue - State: closed - Opened by nkrumm about 5 years ago
Labels: need for prod use

#43 - Fix S3 link for Params.json

Issue - State: closed - Opened by nkrumm about 5 years ago - 2 comments

#43 - Fix S3 link for Params.json

Issue - State: closed - Opened by nkrumm about 5 years ago - 2 comments

#42 - Copy-to-clipboard for links/urls/arns

Issue - State: closed - Opened by nkrumm about 5 years ago - 2 comments

#42 - Copy-to-clipboard for links/urls/arns

Issue - State: closed - Opened by nkrumm about 5 years ago - 2 comments

#41 - Templated UI for job submission

Issue - State: closed - Opened by nkrumm about 5 years ago - 5 comments

#41 - Templated UI for job submission

Issue - State: closed - Opened by nkrumm about 5 years ago - 5 comments

#40 - Group Tasks by task name in WorkflowDetail View

Issue - State: closed - Opened by nkrumm about 5 years ago - 2 comments

#40 - Group Tasks by task name in WorkflowDetail View

Issue - State: closed - Opened by nkrumm about 5 years ago - 2 comments

#39 - Show launch method in workflow detail

Issue - State: closed - Opened by nkrumm about 5 years ago - 3 comments

#39 - Show launch method in workflow detail

Issue - State: closed - Opened by nkrumm about 5 years ago - 3 comments

#38 - move ECS/batch event lambdas to internal vpc

Issue - State: closed - Opened by nkrumm about 5 years ago - 5 comments

#38 - move ECS/batch event lambdas to internal vpc

Issue - State: closed - Opened by nkrumm about 5 years ago - 5 comments

#37 - Provide cost accounting by workgroup

Issue - State: open - Opened by nkrumm about 5 years ago

#37 - Provide cost accounting by workgroup

Issue - State: open - Opened by nkrumm about 5 years ago

#36 - Provide role/resource introspection by workgroup

Issue - State: open - Opened by nkrumm about 5 years ago

#36 - Provide role/resource introspection by workgroup

Issue - State: open - Opened by nkrumm about 5 years ago

#35 - In workflow list, option to group runs by related re-runs?

Issue - State: open - Opened by nkrumm about 5 years ago

#35 - In workflow list, option to group runs by related re-runs?

Issue - State: open - Opened by nkrumm about 5 years ago

#34 - show previously executed tasks with resumed runs

Issue - State: closed - Opened by nkrumm about 5 years ago - 2 comments

#34 - show previously executed tasks with resumed runs

Issue - State: closed - Opened by nkrumm about 5 years ago - 2 comments

#33 - Create bucket + appropriate lifecycle policies for NF temp data

Issue - State: closed - Opened by nkrumm about 5 years ago - 1 comment

#33 - Create bucket + appropriate lifecycle policies for NF temp data

Issue - State: closed - Opened by nkrumm about 5 years ago - 1 comment

#32 - Consider git push-to-run functionality

Issue - State: closed - Opened by nkrumm about 5 years ago - 3 comments

#32 - Consider git push-to-run functionality

Issue - State: closed - Opened by nkrumm about 5 years ago - 3 comments

#31 - Ensure all batch jobs are killed when stopping workflow

Issue - State: open - Opened by nkrumm about 5 years ago

#31 - Ensure all batch jobs are killed when stopping workflow

Issue - State: open - Opened by nkrumm about 5 years ago

#30 - Add API + UI to stop running workflow

Issue - State: closed - Opened by nkrumm about 5 years ago - 3 comments

#29 - Search

Issue - State: open - Opened by nkrumm about 5 years ago
Labels: low priority

#29 - Search

Issue - State: open - Opened by nkrumm about 5 years ago
Labels: low priority

#28 - Build container management subsystem?

Issue - State: closed - Opened by nkrumm about 5 years ago - 2 comments

#28 - Build container management subsystem?

Issue - State: closed - Opened by nkrumm about 5 years ago - 2 comments

#27 - Capture and report AWS Batch system errors

Issue - State: closed - Opened by nkrumm about 5 years ago - 2 comments
Labels: has attachment

#27 - Capture and report AWS Batch system errors

Issue - State: closed - Opened by nkrumm about 5 years ago - 2 comments
Labels: has attachment

#26 - Update example with better conifg

Issue - State: closed - Opened by nkrumm about 5 years ago - 1 comment

#25 - AWS Resource isolation

Issue - State: closed - Opened by nkrumm about 5 years ago - 31 comments

#25 - AWS Resource isolation

Issue - State: closed - Opened by nkrumm about 5 years ago - 31 comments

#24 - Consider if nextflow VM memory needs to be limited

Issue - State: open - Opened by nkrumm about 5 years ago

#24 - Consider if nextflow VM memory needs to be limited

Issue - State: open - Opened by nkrumm about 5 years ago

#23 - Enable auto-refresh

Issue - State: closed - Opened by nkrumm about 5 years ago
Labels: need for prod use

#23 - Enable auto-refresh

Issue - State: closed - Opened by nkrumm about 5 years ago
Labels: need for prod use

#22 - Submit Wizard UI?

Issue - State: closed - Opened by nkrumm about 5 years ago - 3 comments
Labels: low priority

#22 - Submit Wizard UI?

Issue - State: closed - Opened by nkrumm about 5 years ago - 3 comments
Labels: low priority

#21 - lazy load editor in submit view

Issue - State: open - Opened by nkrumm about 5 years ago
Labels: low priority

#21 - lazy load editor in submit view

Issue - State: open - Opened by nkrumm about 5 years ago
Labels: low priority

#20 - Submit UI

Issue - State: closed - Opened by nkrumm about 5 years ago - 9 comments

#19 - Sort order for workflow list incorrect

Issue - State: closed - Opened by nkrumm about 5 years ago - 1 comment

#19 - Sort order for workflow list incorrect

Issue - State: closed - Opened by nkrumm about 5 years ago - 1 comment

#18 - use regex to find S3 urls in logs/scripts/output and wrap on <S3Link />

Issue - State: closed - Opened by nkrumm about 5 years ago - 2 comments

#18 - use regex to find S3 urls in logs/scripts/output and wrap on <S3Link />

Issue - State: closed - Opened by nkrumm about 5 years ago - 2 comments

#17 - Helpful nextflow resources

Issue - State: open - Opened by nkrumm about 5 years ago - 2 comments

#16 - Issues with Run Time

Issue - State: open - Opened by nkrumm about 5 years ago

#16 - Issues with Run Time

Issue - State: open - Opened by nkrumm about 5 years ago

#15 - Run workflows with `-with-dag` and display in Batchman after workflow is complete

Issue - State: open - Opened by nkrumm about 5 years ago - 4 comments

#14 - introspect workflow for things like publishDir?

Issue - State: closed - Opened by nkrumm about 5 years ago - 2 comments

#13 - Add view to see nextflow script + config files

Issue - State: closed - Opened by nkrumm about 5 years ago - 1 comment

#12 - Consider if nextflow runner needs to subdivide the temp workspace

Issue - State: closed - Opened by nkrumm about 5 years ago - 3 comments

#11 - Fix default table sort and add sortable/filter options

Issue - State: closed - Opened by nkrumm about 5 years ago - 1 comment

#10 - Improve documenetation around API for swagger et al.

Issue - State: closed - Opened by nkrumm about 5 years ago - 2 comments

#9 - Users/groups support

Issue - State: closed - Opened by nkrumm about 5 years ago - 3 comments

#8 - AWS Resource Management

Issue - State: open - Opened by nkrumm about 5 years ago - 2 comments

#7 - Relaunch support

Issue - State: closed - Opened by nkrumm about 5 years ago - 14 comments

#6 - build launch system

Issue - State: closed - Opened by nkrumm about 5 years ago - 18 comments

#5 - Add link outs to s3 directories in metadata view

Issue - State: closed - Opened by nkrumm about 5 years ago - 1 comment

#4 - display error status when workflow fails

Issue - State: closed - Opened by nkrumm about 5 years ago - 2 comments

#3 - Fix run time and completion time display in UI

Issue - State: closed - Opened by nkrumm about 5 years ago - 1 comment

#2 - Surface nextflow manifest information in workflow list and detail pages

Issue - State: closed - Opened by nkrumm about 5 years ago - 1 comment

#1 - AWS Batch job metadata does not persist on AWS

Issue - State: closed - Opened by nkrumm about 5 years ago - 2 comments

GitHub / fredhutch/batchman issues and pull requests