frankkramer-lab/MIScnn issues and pull requests

#172 - Concatenate layer doesn't match shapes

Issue - State: open - Opened by joaomamede 3 months ago

#171 - got error while installing in kaggel notebook

Issue - State: open - Opened by rddvsr 6 months ago

#170 - NiftiSlicerIO using old predition save pattern. guaranteed crash.

Issue - State: open - Opened by Deathlymad about 1 year ago
Labels: bug

#169 - [Possible bug] compute_dice() in detailed_validation returns NaN when ground truth and prediction are the same

Issue - State: open - Opened by emmanuel-nwogu over 1 year ago

#168 - Bug in split_validation

Issue - State: open - Opened by emmanuel-nwogu over 1 year ago - 1 comment
Labels: bug

#167 - How to visualise my training dataset to confirm it is being correctly loaded?

Issue - State: open - Opened by emmanuel-nwogu over 1 year ago - 3 comments
Labels: bug

#166 - Optimized function(s) using `numpy.lib.stride_tricks.as_strided`

Pull Request - State: open - Opened by ajinkya-kulkarni over 1 year ago
Labels: enhancement

#165 - Bump tensorflow from 2.7.0 to 2.11.1

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#164 - How do we create a data interface without segmentations for prediction only? [Help Wanted]

Issue - State: open - Opened by joaomamede over 1 year ago - 1 comment
Labels: help wanted

#163 - Bump pillow from 8.3.2 to 9.3.0

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#162 - Bump tensorflow from 2.7.0 to 2.9.3

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#161 - Contribute to `KerasCV`

Issue - State: closed - Opened by innat about 2 years ago

#160 - Patching Concat error somewhere in dev branch

Issue - State: open - Opened by muellerdo about 2 years ago - 1 comment
Labels: bug

#159 - Test pipeline with tensorflow data to ensure functionality

Issue - State: open - Opened by muellerdo about 2 years ago
Labels: enhancement

#158 - "patchwise-crop" need a patch shape // channel notation inconsistencies

Issue - State: open - Opened by Pfleiderer-Adrian over 2 years ago

#157 - Bump numpy from 1.19.2 to 1.22.0

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#156 - 155-overlay_segmentation-function-is-missing

Pull Request - State: closed - Opened by Pfleiderer-Adrian over 2 years ago - 6 comments
Labels: bug, enhancement

#155 - "overlay_segmentation"-Function is missing

Issue - State: open - Opened by Pfleiderer-Adrian over 2 years ago - 1 comment

#155 - "overlay_segmentation"-Function is missing

Issue - State: open - Opened by Pfleiderer-Adrian over 2 years ago - 1 comment

#154 - Installing the package

Issue - State: open - Opened by eateequi over 2 years ago

#153 - Errors during the predicting

Issue - State: closed - Opened by ShaniaShan over 2 years ago - 1 comment

#153 - Errors during the predicting

Issue - State: closed - Opened by ShaniaShan over 2 years ago - 1 comment

#152 - Bump tensorflow from 2.7.0 to 2.7.2

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#151 - Using a 2D U-Net for KiTS21

Issue - State: open - Opened by dannyhow12 over 2 years ago

#151 - Using a 2D U-Net for KiTS21

Issue - State: open - Opened by dannyhow12 over 2 years ago

#151 - Using a 2D U-Net for KiTS21

Issue - State: open - Opened by dannyhow12 over 2 years ago

#150 - Hotfix: Modelgroup Cross-validation bug

Issue - State: closed - Opened by muellerdo over 2 years ago
Labels: bug

#150 - Hotfix: Modelgroup Cross-validation bug

Issue - State: closed - Opened by muellerdo over 2 years ago
Labels: bug

#150 - Hotfix: Modelgroup Cross-validation bug

Issue - State: closed - Opened by muellerdo over 2 years ago
Labels: bug

#149 - Solved

Issue - State: closed - Opened by dannyhow12 over 2 years ago

#149 - Solved

Issue - State: closed - Opened by dannyhow12 over 2 years ago

#149 - Solved

Issue - State: closed - Opened by dannyhow12 over 2 years ago

#148 - Model.load, adding checkpoints

Pull Request - State: closed - Opened by dannyhow12 over 2 years ago

#148 - Model.load, adding checkpoints

Pull Request - State: closed - Opened by dannyhow12 over 2 years ago

#148 - Model.load, adding checkpoints

Pull Request - State: closed - Opened by dannyhow12 over 2 years ago

#147 - Model.Train and Cross Validation

Issue - State: open - Opened by dannyhow12 over 2 years ago - 4 comments
Labels: bug, information

#146 - UnknownError: Failed to get convolution algorithm. This is probably because cuDNN failed to initialize

Issue - State: closed - Opened by Qcatbot over 2 years ago - 3 comments
Labels: bug

#145 - KITS21 data: Index 3 is out of bounds for axis 1 with size 3

Issue - State: closed - Opened by dannyhow12 over 2 years ago - 4 comments
Labels: bug, question

#145 - KITS21 data: Index 3 is out of bounds for axis 1 with size 3

Issue - State: closed - Opened by dannyhow12 over 2 years ago - 4 comments
Labels: bug, question

#145 - KITS21 data: Index 3 is out of bounds for axis 1 with size 3

Issue - State: closed - Opened by dannyhow12 over 2 years ago - 4 comments
Labels: bug, question

#144 - Xai architecture change - xai split 3

Pull Request - State: closed - Opened by Deathlymad over 2 years ago - 1 comment

#144 - Xai architecture change - xai split 3

Pull Request - State: closed - Opened by Deathlymad over 2 years ago - 1 comment

#144 - Xai architecture change - xai split 3

Pull Request - State: closed - Opened by Deathlymad over 2 years ago - 1 comment

#143 - Xai visualizer update - split 2

Pull Request - State: closed - Opened by Deathlymad over 2 years ago - 5 comments

#143 - Xai visualizer update - split 2

Pull Request - State: closed - Opened by Deathlymad over 2 years ago - 5 comments

#143 - Xai visualizer update - split 2

Pull Request - State: closed - Opened by Deathlymad over 2 years ago - 5 comments

#142 - Xai Patching - split 1

Pull Request - State: closed - Opened by Deathlymad over 2 years ago - 1 comment

#142 - Xai Patching - split 1

Pull Request - State: closed - Opened by Deathlymad over 2 years ago - 1 comment

#142 - Xai Patching - split 1

Pull Request - State: closed - Opened by Deathlymad over 2 years ago - 1 comment

#141 - One line fix of updated numpy and scipy version.

Pull Request - State: closed - Opened by Deathlymad over 2 years ago - 2 comments

#141 - One line fix of updated numpy and scipy version.

Pull Request - State: closed - Opened by Deathlymad over 2 years ago - 2 comments

#141 - One line fix of updated numpy and scipy version.

Pull Request - State: closed - Opened by Deathlymad over 2 years ago - 2 comments

#139 - Multi Model system incorrectly handles paths

Issue - State: closed - Opened by Deathlymad over 2 years ago
Labels: enhancement

#139 - Multi Model system incorrectly handles paths

Issue - State: closed - Opened by Deathlymad over 2 years ago
Labels: enhancement

#139 - Multi Model system incorrectly handles paths

Issue - State: closed - Opened by Deathlymad over 2 years ago
Labels: enhancement

#138 - Normalization and Clipping

Issue - State: open - Opened by lcaronson over 2 years ago - 1 comment
Labels: question

#138 - Normalization and Clipping

Issue - State: open - Opened by lcaronson over 2 years ago - 1 comment
Labels: question

#138 - Normalization and Clipping

Issue - State: open - Opened by lcaronson over 2 years ago - 1 comment
Labels: question

#137 - Strategies to Resampling?

Issue - State: open - Opened by innat over 2 years ago - 1 comment
Labels: question

#137 - Strategies to Resampling?

Issue - State: open - Opened by innat over 2 years ago - 1 comment
Labels: question

#137 - Strategies to Resampling?

Issue - State: closed - Opened by innat over 2 years ago - 2 comments
Labels: question

#136 - Which standard configuration to use when comparing MISccn to other methods?

Issue - State: open - Opened by davidkvcs over 2 years ago - 2 comments
Labels: question

#135 - Proposition of merging the results of XAISeg into MIScnn.

Pull Request - State: closed - Opened by Deathlymad over 2 years ago - 2 comments

#135 - Proposition of merging the results of XAISeg into MIScnn.

Pull Request - State: closed - Opened by Deathlymad over 2 years ago - 2 comments

#135 - Proposition of merging the results of XAISeg into MIScnn.

Pull Request - State: closed - Opened by Deathlymad over 2 years ago - 2 comments

#134 - Clarification?

Issue - State: closed - Opened by innat over 2 years ago - 10 comments
Labels: information

#132 - Bump pillow from 8.3.2 to 9.0.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#131 - Multi-Path architecture proposal

Pull Request - State: closed - Opened by jumutc over 2 years ago - 7 comments
Labels: enhancement

#131 - Multi-Path architecture proposal

Pull Request - State: closed - Opened by jumutc over 2 years ago - 7 comments
Labels: enhancement

#131 - Multi-Path architecture proposal

Pull Request - State: closed - Opened by jumutc over 2 years ago - 7 comments
Labels: enhancement

#130 - Attention to covid19.MIScnn author!

Issue - State: closed - Opened by innat over 2 years ago - 3 comments
Labels: information

#130 - Attention to covid19.MIScnn author!

Issue - State: closed - Opened by innat over 2 years ago - 3 comments
Labels: information

#130 - Attention to covid19.MIScnn author!

Issue - State: closed - Opened by innat over 2 years ago - 3 comments
Labels: information

#129 - Kits-19.ipynb

Issue - State: open - Opened by sreeharih over 2 years ago - 5 comments
Labels: bug

#129 - Kits-19.ipynb

Issue - State: open - Opened by sreeharih over 2 years ago - 5 comments
Labels: bug

#129 - Kits-19.ipynb

Issue - State: open - Opened by sreeharih over 2 years ago - 5 comments
Labels: bug

#128 - Batchgenerators: MirrorTransform

Issue - State: open - Opened by muellerdo over 2 years ago

#128 - Batchgenerators: MirrorTransform

Issue - State: open - Opened by muellerdo over 2 years ago

#128 - Batchgenerators: MirrorTransform

Issue - State: open - Opened by muellerdo over 2 years ago

#127 - New patching in dev branch not functional with setup.py installation

Issue - State: closed - Opened by muellerdo over 2 years ago - 1 comment
Labels: bug

#127 - New patching in dev branch not functional with setup.py installation

Issue - State: closed - Opened by muellerdo over 2 years ago - 1 comment
Labels: bug

#127 - New patching in dev branch not functional with setup.py installation

Issue - State: closed - Opened by muellerdo over 2 years ago - 1 comment
Labels: bug

#126 - Support latest Tensorflow/Keras

Pull Request - State: closed - Opened by innat over 2 years ago - 4 comments
Labels: enhancement

#126 - Support latest Tensorflow/Keras

Pull Request - State: closed - Opened by innat over 2 years ago - 4 comments
Labels: enhancement

#126 - Support latest Tensorflow/Keras

Pull Request - State: closed - Opened by innat over 2 years ago - 4 comments
Labels: enhancement

#125 - MIScnn No Longer Running in Colab

Issue - State: closed - Opened by ChrisJWest over 2 years ago - 2 comments

#125 - MIScnn No Longer Running in Colab

Issue - State: closed - Opened by ChrisJWest over 2 years ago - 2 comments

#125 - MIScnn No Longer Running in Colab

Issue - State: closed - Opened by ChrisJWest over 2 years ago - 2 comments

#124 - Bump numpy from 1.19.2 to 1.21.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#123 - Bump tensorflow from 2.7.0 to 2.8.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#123 - Bump tensorflow from 2.7.0 to 2.8.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#123 - Bump tensorflow from 2.7.0 to 2.8.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#122 - Bump tensorflow from 2.7.0 to 2.7.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#122 - Bump tensorflow from 2.7.0 to 2.7.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#122 - Bump tensorflow from 2.7.0 to 2.7.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#121 - AssertionError on predict with activation_output=True

Issue - State: closed - Opened by jumutc over 2 years ago - 2 comments
Labels: bug

#120 - dictionary_io.py with additional attributes

Pull Request - State: closed - Opened by Dennis182 over 2 years ago
Labels: enhancement

#120 - dictionary_io.py with additional attributes

Pull Request - State: closed - Opened by Dennis182 over 2 years ago
Labels: enhancement

#120 - dictionary_io.py with additional attributes

Pull Request - State: closed - Opened by Dennis182 over 2 years ago
Labels: enhancement

#119 - Typo fixed in cross_validation (learninig_rate)

Pull Request - State: closed - Opened by Dennis182 over 2 years ago
Labels: bug

GitHub / frankkramer-lab/MIScnn issues and pull requests