fractal-analytics-platform/fractal-server issues and pull requests

#949 - Update sqlmodel to 0.0.11

Pull Request - State: closed - Opened by tcompa about 1 year ago - 1 comment

#948 - Fix CI

Pull Request - State: closed - Opened by tcompa about 1 year ago - 1 comment

#947 - Monitoring endpoints

Pull Request - State: closed - Opened by ychiucco about 1 year ago - 3 comments

#946 - Make it very clear in docs that required python is >= 3.9

Issue - State: closed - Opened by tcompa about 1 year ago
Labels: documentation, maintenance, 1.4.0

#945 - To check: what happens if a project (or dataset or workflow) is deleted while a job is running?

Issue - State: closed - Opened by tcompa about 1 year ago
Labels: Priority, 1.4.0

#944 - Fix docker error in (local) CI

Issue - State: closed - Opened by tcompa about 1 year ago - 4 comments
Labels: testing

#943 - Improve delete-resource endpoint

Pull Request - State: closed - Opened by tcompa about 1 year ago - 1 comment

#942 - 941 generate json schemas for some of the current appschemas pydantic models

Pull Request - State: closed - Opened by tcompa about 1 year ago - 1 comment

#941 - Generate JSON Schemas for some of the current `app/schemas` Pydantic models

Issue - State: closed - Opened by tcompa about 1 year ago - 1 comment

#940 - Release 1.3.13

Issue - State: closed - Opened by tcompa about 1 year ago
Labels: High Priority

#939 - Remove `sqlalchemy_utils` dependency

Pull Request - State: closed - Opened by tcompa about 1 year ago - 1 comment

#938 - Remove `sqlalchemy-utils`?

Issue - State: closed - Opened by tcompa about 1 year ago
Labels: dependencies

#937 - Fix `cloudpickle`-version definition in `pyproject.toml`

Pull Request - State: closed - Opened by tcompa about 1 year ago - 1 comment

#936 - Fix dependency-version constraint for cloudpickle

Issue - State: closed - Opened by tcompa about 1 year ago
Labels: bug, dependencies

#935 - Review enum-related behavior

Issue - State: closed - Opened by tcompa about 1 year ago - 6 comments
Labels: High Priority, dependencies, 1.4.0, db life cycle

#934 - Update sqlmodel

Pull Request - State: closed - Opened by tcompa about 1 year ago - 3 comments

#933 - Implement a first set of superuser-restricted monitoring endpoints

Issue - State: closed - Opened by tcompa about 1 year ago - 2 comments
Labels: 1.4.0

#932 - Review `delete_resource` endpoint

Issue - State: closed - Opened by tcompa about 1 year ago
Labels: maintenance

#931 - Disable postgres service when using sqlite in CI (ref #928)

Pull Request - State: closed - Opened by tcompa about 1 year ago - 2 comments

#930 - Bump urllib3 from 2.0.6 to 2.0.7

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#929 - Review project deletion

Issue - State: closed - Opened by tcompa about 1 year ago - 1 comment

#928 - Deferred db objects in `submit_workflow`

Issue - State: closed - Opened by ychiucco about 1 year ago - 5 comments

#927 - Review `ApplyWorkflow` table definition

Pull Request - State: closed - Opened by ychiucco about 1 year ago - 4 comments

#926 - Disable postgres service in GitHub CI when using sqlite

Issue - State: closed - Opened by tcompa about 1 year ago
Labels: testing, maintenance, sqlite

#925 - Update sqlmodel to 0.0.10 (close #924)

Pull Request - State: closed - Opened by tcompa about 1 year ago - 3 comments

#924 - Update sqlmodel to 0.0.11

Issue - State: closed - Opened by tcompa about 1 year ago - 2 comments
Labels: dependencies

#923 - Remove relationships from ApplyWorkflow

Pull Request - State: closed - Opened by ychiucco about 1 year ago

#922 - Handling of pip cache directory for task installation

Issue - State: open - Opened by jluethi about 1 year ago
Labels: task collection

#921 - Add data into `tests/data/test-1.3.11.db`

Pull Request - State: closed - Opened by ychiucco about 1 year ago - 3 comments

#920 - Expose per-user and per-workflow GET-job endpoints?

Issue - State: closed - Opened by tcompa about 1 year ago
Labels: 1.4.0

#919 - Set the working directory that tasks are run from?

Issue - State: closed - Opened by jluethi about 1 year ago - 3 comments
Labels: slurm

#918 - Remove batch operations from migration

Issue - State: closed - Opened by tcompa about 1 year ago - 4 comments
Labels: maintenance, dependencies, db life cycle, v2, sqlite

#917 - Make `test_commands` stateless with postgres

Pull Request - State: closed - Opened by ychiucco about 1 year ago - 2 comments

#916 - Add information about minimal required sqlite version (close #910)

Pull Request - State: closed - Opened by tcompa about 1 year ago - 1 comment

#915 - Ruc CI both with sqlite and postgres

Pull Request - State: closed - Opened by ychiucco about 1 year ago - 2 comments

#914 - Add data into `test-1.3.11.db`

Issue - State: closed - Opened by tcompa about 1 year ago
Labels: testing, db life cycle

#913 - `test_commands` is not stateless when using postgres

Issue - State: closed - Opened by tcompa about 1 year ago - 1 comment
Labels: testing

#912 - Review support for cloudpickle 3.0

Issue - State: closed - Opened by tcompa about 1 year ago - 1 comment
Labels: maintenance, dependencies

#911 - Can we use ubuntu 22 in github ci?

Issue - State: closed - Opened by tcompa about 1 year ago
Labels: testing, dependencies

#910 - Review libsqlite3-0 requirements

Issue - State: closed - Opened by tcompa about 1 year ago - 1 comment
Labels: dependencies, sqlite

#909 - Use ubuntu 22 in CI

Pull Request - State: closed - Opened by tcompa about 1 year ago - 1 comment

#908 - Run CI with both sqlite and postgresql

Issue - State: closed - Opened by tcompa about 1 year ago - 1 comment
Labels: testing

#907 - Task collection should use ` --copies` when creating the task Python venv

Issue - State: open - Opened by jluethi about 1 year ago - 4 comments
Labels: task collection

#906 - [DO NOT MERGE] Implement archive-job feature

Pull Request - State: closed - Opened by ychiucco about 1 year ago - 5 comments

#905 - Implement archive-Job feature

Issue - State: closed - Opened by ychiucco about 1 year ago

#904 - Test new migrations against "old" data

Issue - State: closed - Opened by tcompa about 1 year ago - 1 comment
Labels: db life cycle

#903 - Remove obsolete fixture `slurm_config`

Pull Request - State: closed - Opened by ychiucco about 1 year ago - 1 comment

#902 - Include atomic changes from pull request #891

Issue - State: closed - Opened by ychiucco about 1 year ago

#901 - Fix migration for `Dataset.history` (ref #900)

Pull Request - State: closed - Opened by tcompa about 1 year ago - 1 comment

#900 - Fix 500 error when getting a non-existing project

Issue - State: closed - Opened by tcompa about 1 year ago - 5 comments
Labels: High Priority

#899 - Remove obsolete slurm_config fixture

Issue - State: closed - Opened by tcompa about 1 year ago
Labels: maintenance, slurm

#898 - 838 move datasetmetahistory into datasethistory

Pull Request - State: closed - Opened by mfranzon about 1 year ago - 9 comments

#897 - Remove default Dataset from Project creation

Pull Request - State: closed - Opened by ychiucco about 1 year ago - 3 comments

#896 - Log request body in endpoints

Pull Request - State: closed - Opened by ychiucco about 1 year ago - 2 comments

#895 - Remove `greenlet` and add `asyncio` extra to `sqlalchemy`

Pull Request - State: closed - Opened by ychiucco about 1 year ago - 4 comments

#894 - Remove greenlet dependency, and add asyncio extra to sqlalchemy

Issue - State: closed - Opened by tcompa about 1 year ago
Labels: dependencies

#891 - Review monkeypatching of `settings`

Pull Request - State: closed - Opened by ychiucco about 1 year ago - 3 comments

#888 - To check: are tasks logs written at the end of tasks or during execution?

Issue - State: closed - Opened by tcompa about 1 year ago - 2 comments

#887 - Fix swagger in docs

Issue - State: open - Opened by tcompa about 1 year ago - 2 comments
Labels: bug, documentation

#886 - Bump urllib3 from 2.0.4 to 2.0.6

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#885 - Review checks for completed jobs in `FractalFileWaitThread.check`

Pull Request - State: closed - Opened by tcompa about 1 year ago - 1 comment

#884 - slurm runner: Reduce number of necessary sudo ls calls

Issue - State: closed - Opened by jluethi about 1 year ago - 5 comments
Labels: slurm

#883 - Publish on conda-forge

Issue - State: open - Opened by tcompa about 1 year ago

#882 - Publish to pypi via dedicated GitHub action

Pull Request - State: closed - Opened by tcompa about 1 year ago - 1 comment

#881 - Publish to PyPI via dedicated GitHub action

Issue - State: closed - Opened by tcompa about 1 year ago - 2 comments
Labels: maintenance

#880 - Dependencies injection

Pull Request - State: closed - Opened by ychiucco about 1 year ago - 2 comments

#879 - Handle `null` in task metadiff JSON output

Pull Request - State: closed - Opened by tcompa about 1 year ago - 1 comment

#878 - Unknown error in server 1.3.8

Issue - State: closed - Opened by jluethi about 1 year ago - 3 comments
Labels: bug

#877 - Update `fastapi` and `fastapi-users`

Pull Request - State: closed - Opened by ychiucco about 1 year ago - 3 comments

#876 - Remove `DEPLOYMENT_TYPE` variable

Issue - State: closed - Opened by tcompa about 1 year ago
Labels: maintenance

#875 - Review `config.py`

Pull Request - State: closed - Opened by ychiucco about 1 year ago - 1 comment

#874 - Handle error upon task collection, when tasks exist in the database but not on-disk

Pull Request - State: closed - Opened by tcompa about 1 year ago - 1 comment

#873 - Fix `StrictSettings` in config.py

Issue - State: closed - Opened by tcompa about 1 year ago

#872 - Add `_check_project_exists` helper function (closes #869)

Pull Request - State: closed - Opened by tcompa about 1 year ago - 1 comment

#871 - Extract dataset models from `models/project.py` into `models/dataset.py`

Pull Request - State: closed - Opened by tcompa about 1 year ago - 1 comment

#870 - Split models/project.py into project and dataset modules

Issue - State: closed - Opened by tcompa about 1 year ago
Labels: maintenance

#869 - Introduce `_check_project_exists` auxiliary function in API

Issue - State: closed - Opened by tcompa about 1 year ago
Labels: maintenance

#868 - `pip install` from clean conda env leads to `ModuleNotFoundError: No module named 'six'`

Issue - State: closed - Opened by tcompa about 1 year ago - 1 comment
Labels: bug, High Priority

#867 - Add check in PATCH Workflow

Pull Request - State: closed - Opened by ychiucco about 1 year ago - 2 comments

#866 - 500 internal error on task collection

Issue - State: closed - Opened by mfranzon about 1 year ago - 3 comments
Labels: bug

#865 - Pin docs dependencies

Pull Request - State: closed - Opened by tcompa about 1 year ago - 1 comment

#864 - Pin docs versions

Issue - State: closed - Opened by tcompa about 1 year ago
Labels: documentation, maintenance, dependencies

#863 - Fix local CI for `test_full_workflow.py::test_missing_metadiff`

Pull Request - State: closed - Opened by tcompa about 1 year ago - 1 comment

#862 - Bump cryptography from 41.0.3 to 41.0.4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#861 - All/many endpoints should log their request body (at the DEBUG level)

Issue - State: closed - Opened by tcompa about 1 year ago - 1 comment
Labels: maintenance

#860 - Fix sqlite "database is locked" error

Pull Request - State: closed - Opened by zonia3000 about 1 year ago - 9 comments

#859 - Transform `common` into a standard folder

Pull Request - State: closed - Opened by ychiucco about 1 year ago - 1 comment

#858 - PATCH workflow lets user have two workflows with the same name

Issue - State: closed - Opened by tcompa about 1 year ago
Labels: bug, maintenance

#857 - Transform `common` into a standard folder

Issue - State: closed - Opened by tcompa about 1 year ago
Labels: maintenance

#856 - Review use of dependency-injection module

Issue - State: open - Opened by tcompa about 1 year ago - 3 comments
Labels: testing, maintenance

#855 - Postgres docs and configuration checks

Pull Request - State: closed - Opened by ychiucco about 1 year ago - 3 comments

#854 - Handle non-Fractal-compatible tasks more robustly

Issue - State: closed - Opened by tcompa about 1 year ago
Labels: bug

#853 - Document Postgres

Pull Request - State: closed - Opened by ychiucco about 1 year ago

#852 - Improve updated-metadata collection in workflow runner

Pull Request - State: closed - Opened by mfranzon about 1 year ago - 2 comments

#851 - Expose possibility of modifying `Dataset.components`

Issue - State: closed - Opened by tcompa about 1 year ago - 1 comment
Labels: flexibility

#850 - Move components from `Dataset.meta` to `Dataset.components`

Issue - State: closed - Opened by tcompa about 1 year ago - 1 comment
Labels: flexibility

#848 - Add more tests for `config.py`

Issue - State: closed - Opened by tcompa about 1 year ago
Labels: maintenance

#847 - Update fastapi and fastapi-users

Issue - State: closed - Opened by tcompa about 1 year ago - 1 comment
Labels: maintenance

#846 - Replace `logger.error` with `logger.info` in SLURM-config function

Pull Request - State: closed - Opened by tcompa about 1 year ago - 1 comment

#845 - Update `output_dataset.meta` also when workflow execution fails

Pull Request - State: closed - Opened by tcompa about 1 year ago - 1 comment

GitHub / fractal-analytics-platform/fractal-server issues and pull requests