Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / fractal-analytics-platform/fractal-server issues and pull requests

#1253 - DB and API

Pull Request - State: closed - Opened by ychiucco 9 months ago
Labels: v2

#1252 - import from subpackage

Pull Request - State: closed - Opened by tcompa 9 months ago

#1251 - Create `fractal_server.images` module

Pull Request - State: closed - Opened by ychiucco 9 months ago

#1250 - [auto] Update dependencies in `poetry.lock`

Pull Request - State: closed - Opened by tcompa 9 months ago - 2 comments

#1249 - Make `cfut.slurm.jobs_finished` more robust

Issue - State: closed - Opened by tcompa 9 months ago - 4 comments
Labels: slurm

#1248 - DB and API v2 - partial

Pull Request - State: closed - Opened by ychiucco 9 months ago

#1247 - Also remove `history`, within `trim_TaskParameters`

Pull Request - State: closed - Opened by tcompa 9 months ago - 2 comments

#1246 - Also remove history parallelization list from input pickle files

Issue - State: closed - Opened by tcompa 9 months ago
Labels: High Priority, History/Status

#1245 - Trim `TaskParameters` object before creating pickle files

Pull Request - State: closed - Opened by tcompa 9 months ago - 2 comments

#1244 - Drop component list from workflow.log

Issue - State: closed - Opened by tcompa 9 months ago

#1243 - Review whether SLURM executor always removes pickle files

Issue - State: open - Opened by tcompa 9 months ago - 1 comment
Labels: slurm

#1242 - Drop image list from input pickle files, and not only from args.json files

Issue - State: closed - Opened by tcompa 9 months ago - 1 comment
Labels: High Priority, slurm

#1241 - Bump cryptography from 42.0.3 to 42.0.4

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies

#1240 - Fix bug in slurm runner (glob is too broad)

Issue - State: closed - Opened by tcompa 9 months ago
Labels: slurm

#1239 - Fix wrong globbing filters within SLURM runner

Pull Request - State: closed - Opened by tcompa 9 months ago - 4 comments

#1238 - Remove image list from within `write_args_file`

Pull Request - State: closed - Opened by tcompa 9 months ago - 7 comments

#1237 - Do not write image list to args.json files

Issue - State: closed - Opened by tcompa 9 months ago - 1 comment
Labels: High Priority, slurm

#1236 - `SingleImage` class

Pull Request - State: closed - Opened by ychiucco 9 months ago

#1235 - Fix tests v2

Pull Request - State: closed - Opened by ychiucco 9 months ago

#1234 - Make task collection cleanup more robust upon collection failure (related to "Pinned packages versions")

Issue - State: closed - Opened by jluethi 9 months ago - 2 comments
Labels: backlog, Priority, testing, task collection

#1233 - [auto] Update dependencies in `poetry.lock`

Pull Request - State: closed - Opened by tcompa 9 months ago - 2 comments

#1232 - 1184 expand list of benchmark scenarios

Pull Request - State: closed - Opened by mfranzon 9 months ago - 2 comments

#1231 - Fix error message

Pull Request - State: closed - Opened by tcompa 9 months ago - 2 comments

#1230 - Add `GET admin/job/{job_id}/`

Pull Request - State: closed - Opened by ychiucco 9 months ago - 2 comments

#1229 - Add `GET /admin/job/{job_id}/`

Issue - State: closed - Opened by tcompa 9 months ago
Labels: API

#1228 - Remove CORS middleware

Pull Request - State: closed - Opened by ychiucco 9 months ago - 2 comments

#1227 - Fix `validate_db_data_with_read_schemas.py`

Issue - State: closed - Opened by tcompa 9 months ago - 3 comments
Labels: testing

#1226 - Create `clean_db_fractal_1.4.3.sql` in `tests/data/testing_databases`

Issue - State: closed - Opened by tcompa 9 months ago
Labels: testing, db life cycle

#1225 - Fix migrations.yml github action

Pull Request - State: closed - Opened by tcompa 9 months ago - 2 comments

#1224 - Fix migrations.yml action

Issue - State: closed - Opened by tcompa 9 months ago - 1 comment
Labels: testing, db life cycle

#1223 - [auto] Update dependencies in `poetry.lock`

Pull Request - State: closed - Opened by tcompa 9 months ago - 2 comments

#1222 - Update dependencies

Pull Request - State: closed - Opened by tcompa 9 months ago - 2 comments

#1221 - Update sqlalchemy

Issue - State: closed - Opened by tcompa 9 months ago
Labels: dependencies

#1220 - Update fastapi

Issue - State: closed - Opened by tcompa 9 months ago
Labels: dependencies

#1219 - 1212 benchmark and optimize adminjob with large response

Pull Request - State: closed - Opened by mfranzon 9 months ago - 2 comments

#1218 - 1217 trim response body of get tasks endpoint

Pull Request - State: closed - Opened by mfranzon 9 months ago - 2 comments

#1217 - Trim response body of get-tasks endpoint

Issue - State: closed - Opened by tcompa 9 months ago
Labels: API, performance

#1216 - Expose tmp logs for submitted jobs

Pull Request - State: closed - Opened by ychiucco 9 months ago - 5 comments

#1215 - Rewrite release instructions

Pull Request - State: closed - Opened by ychiucco 9 months ago - 2 comments

#1214 - refactor error messages

Pull Request - State: closed - Opened by mfranzon 9 months ago - 2 comments

#1213 - Improve and "standardize" error-message header

Issue - State: closed - Opened by tcompa 10 months ago - 1 comment

#1212 - Benchmark and optimize `/admin/job` with large response

Issue - State: closed - Opened by tcompa 10 months ago - 3 comments
Labels: performance

#1211 - Expose tmp logs for submitted jobs

Issue - State: closed - Opened by tcompa 10 months ago
Labels: API

#1210 - [auto] Update dependencies in `poetry.lock`

Pull Request - State: closed - Opened by tcompa 10 months ago - 2 comments

#1209 - Update release instructions

Pull Request - State: closed - Opened by ychiucco 10 months ago - 2 comments

#1208 - Remove redundant docstrings

Issue - State: open - Opened by ychiucco 10 months ago - 1 comment
Labels: documentation, maintenance

#1207 - Update release instructions

Issue - State: closed - Opened by tcompa 10 months ago - 1 comment
Labels: documentation, db life cycle

#1206 - [auto] Update dependencies in `poetry.lock`

Pull Request - State: closed - Opened by tcompa 10 months ago - 1 comment

#1205 - Deprecate `wrap_with_timing_logs` and `scripts/timer`

Pull Request - State: closed - Opened by ychiucco 10 months ago - 1 comment

#1204 - Split tests in two groups

Pull Request - State: closed - Opened by ychiucco 10 months ago - 2 comments

#1203 - Deprecate `wrap_with_timing_logs`

Issue - State: closed - Opened by tcompa 10 months ago
Labels: maintenance

#1202 - Split tests in two groups, to speed GitHub CI

Issue - State: closed - Opened by tcompa 10 months ago
Labels: testing, maintenance

#1201 - 1132 improve api benchmarks

Pull Request - State: closed - Opened by mfranzon 10 months ago - 3 comments

#1200 - Can we deprecate CORS middleware?

Issue - State: closed - Opened by tcompa 10 months ago - 1 comment
Labels: maintenance, API

#1199 - Add rate limit to apply-workflow endpoint

Pull Request - State: closed - Opened by ychiucco 10 months ago - 2 comments

#1198 - Add mandatory environment variables to documentation

Pull Request - State: closed - Opened by ychiucco 10 months ago - 1 comment

#1197 - Review location of fix-db scripts

Pull Request - State: closed - Opened by tcompa 10 months ago - 1 comment

#1196 - Extract precommit from CI action (close #1185)

Pull Request - State: closed - Opened by tcompa 10 months ago - 1 comment

#1195 - Sort for-loops by objects id in `current.py`

Pull Request - State: closed - Opened by ychiucco 10 months ago - 1 comment

#1194 - Update actions/setup-python to v5

Pull Request - State: closed - Opened by tcompa 10 months ago - 1 comment

#1193 - Review task-collection flow

Issue - State: open - Opened by tcompa 10 months ago
Labels: task collection

#1192 - Update setup-python to v5 in all GitHub actions

Issue - State: closed - Opened by tcompa 10 months ago
Labels: maintenance

#1191 - In `current.py` loops, sort objects by ID

Issue - State: closed - Opened by tcompa 10 months ago
Labels: db life cycle

#1190 - Cleanup task-collection modules and tests

Issue - State: closed - Opened by tcompa 10 months ago - 1 comment
Labels: maintenance, task collection

#1189 - Prevent task-package name conflict

Issue - State: closed - Opened by tcompa 10 months ago - 3 comments
Labels: task collection

#1188 - Review normalization of package names

Pull Request - State: closed - Opened by tcompa 10 months ago - 1 comment

#1187 - New script `validate_db_data_with_read_schemas.py`

Pull Request - State: closed - Opened by ychiucco 10 months ago - 1 comment

#1186 - Review timezone definition

Pull Request - State: closed - Opened by ychiucco 10 months ago - 4 comments

#1185 - Move precommit from ci action to a separate one

Issue - State: closed - Opened by tcompa 10 months ago
Labels: maintenance

#1184 - Expand list of benchmark scenarios

Issue - State: closed - Opened by tcompa 10 months ago
Labels: performance

#1183 - Rename `DB.get_db` into `DB.get_async_db` (close #1181)

Pull Request - State: closed - Opened by tcompa 10 months ago - 1 comment

#1182 - Timestamps managed by database

Pull Request - State: closed - Opened by ychiucco 10 months ago - 1 comment

#1181 - Rename `get_db` in `get_async_db`

Issue - State: closed - Opened by ychiucco 10 months ago
Labels: maintenance

#1180 - Update poetry lock

Pull Request - State: closed - Opened by tcompa 10 months ago - 1 comment

#1179 - Remove `RUNNING` from `JobStatusType`

Pull Request - State: closed - Opened by ychiucco 10 months ago - 1 comment

#1178 - 1128 create testing db programmatically

Pull Request - State: closed - Opened by mfranzon 10 months ago - 3 comments

#1177 - Deprecate python 3.9

Issue - State: closed - Opened by mfranzon 10 months ago - 5 comments

#1176 - Make `ApplyWorkflow.working_dir` non optional

Pull Request - State: closed - Opened by ychiucco 10 months ago - 2 comments

#1175 - Make all dumps in `ApplyWorkflowRead` non optional

Pull Request - State: closed - Opened by ychiucco 10 months ago - 1 comment

#1174 - To explore: add rate limit to apply-workflow endpoint

Issue - State: closed - Opened by tcompa 10 months ago
Labels: testing, performance

#1173 - [DO NOT MERGE] Trigger CI

Pull Request - State: closed - Opened by tcompa 10 months ago - 1 comment

#1172 - Update to `python-dotenv>=0.21.0`

Pull Request - State: closed - Opened by ychiucco 10 months ago - 1 comment

#1171 - Decode stdout/stderr

Pull Request - State: closed - Opened by ychiucco 10 months ago

#1170 - Explore other options for slurm-containers

Issue - State: open - Opened by mfranzon 10 months ago - 3 comments
Labels: testing, slurm

#1169 - Update poetry.lock

Pull Request - State: closed - Opened by tcompa 10 months ago - 1 comment

#1168 - Update to `python-dotenv>=0.21.0`

Issue - State: closed - Opened by tcompa 10 months ago
Labels: dependencies

#1167 - Check in `config.py` if the necessary packages are installed

Pull Request - State: closed - Opened by ychiucco 10 months ago - 3 comments

#1166 - Change test execution order

Pull Request - State: closed - Opened by ychiucco 10 months ago - 6 comments

#1165 - Split `DB.set_db`

Pull Request - State: closed - Opened by ychiucco 10 months ago - 1 comment

#1164 - Change order in `migrations` CI

Pull Request - State: closed - Opened by ychiucco 10 months ago - 3 comments

#1163 - Fix migrations CI for SQLite

Issue - State: closed - Opened by ychiucco 10 months ago
Labels: testing, sqlite

#1162 - Validate `UserCreate.slurm_accounts`

Pull Request - State: closed - Opened by ychiucco 10 months ago - 1 comment

#1161 - Improve validation `UserCreate.slurm_accounts`

Issue - State: closed - Opened by ychiucco 10 months ago

#1157 - Wrong encoding of stdout/stderr in some debug logs

Issue - State: open - Opened by tcompa 10 months ago
Labels: maintenance

#1153 - Fix minor bug in task-collection endpoint

Issue - State: closed - Opened by tcompa 10 months ago
Labels: bug

#1152 - Add `timestamp_created` to `Workflow` and `Dataset`

Pull Request - State: closed - Opened by ychiucco 10 months ago - 1 comment

#1151 - 1150 respond with 202 accepted for the two users and admins stop job endpoints

Pull Request - State: closed - Opened by tcompa 10 months ago - 1 comment