fractal-analytics-platform/fractal-server issues and pull requests

#1453 - Exclude dataset `history` from `applyworkflow` (close #1450)

Pull Request - State: closed - Opened by tcompa 7 months ago - 2 comments

#1452 - Move settings logs from `config.get_settings` to `main.check_settings…

Pull Request - State: closed - Opened by tcompa 7 months ago - 3 comments

#1451 - Make `get_settings` less verbose

Issue - State: closed - Opened by tcompa 7 months ago
Labels: logging

#1450 - Backport fix #1445 (do not include dataset history in `dataset_dump`)

Issue - State: closed - Opened by tcompa 7 months ago
Labels: bug

#1449 - Fix status endpoint

Pull Request - State: closed - Opened by tcompa 7 months ago - 2 comments

#1448 - [auto] Update dependencies in `poetry.lock`

Pull Request - State: closed - Opened by tcompa 7 months ago - 2 comments

#1447 - Fix internal error related to slurm-executor shutdown

Issue - State: open - Opened by tcompa 7 months ago
Labels: bug, slurm

#1446 - Handle internal error in `api/v2/status.py` endpoint

Issue - State: closed - Opened by tcompa 7 months ago - 3 comments
Labels: bug, High Priority, API

#1445 - Forbid extras in `DumpV2` models and cleanup benchmarks

Pull Request - State: closed - Opened by ychiucco 7 months ago - 2 comments

#1444 - Forbid extra attributes in Dump models (v2)

Issue - State: closed - Opened by tcompa 7 months ago - 1 comment
Labels: testing, db life cycle

#1443 - Bump pydantic from 1.10.8 to 1.10.13 in /tests/data/dummy_package_with_args_schemas

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 2 comments
Labels: dependencies

#1442 - Review response time of `GET /api/v2/job/` when datasets have many images

Issue - State: closed - Opened by tcompa 7 months ago - 2 comments
Labels: performance

#1441 - 1434 include benchmark for image query endpoint

Pull Request - State: closed - Opened by mfranzon 7 months ago - 2 comments

#1440 - Improve runner error types and messages

Pull Request - State: closed - Opened by tcompa 7 months ago - 2 comments

#1439 - Review upper bound on number of parallel items

Issue - State: open - Opened by tcompa 7 months ago
Labels: slurm

#1438 - Add cheks for dataset import

Pull Request - State: closed - Opened by tcompa 7 months ago - 2 comments

#1437 - Fix env variable in github action (close #1436)

Pull Request - State: closed - Opened by tcompa 7 months ago - 1 comment

#1436 - Change `JWT_EXPIRE_SECONDS` for benchmarks

Issue - State: closed - Opened by tcompa 7 months ago
Labels: performance

#1435 - If task produces no image, then use `filtered_images`

Pull Request - State: closed - Opened by tcompa 7 months ago - 2 comments

#1434 - Include benchmark for image-query endpoint

Issue - State: closed - Opened by tcompa 7 months ago
Labels: testing, performance, v2

#1433 - [auto] Update dependencies in `poetry.lock`

Pull Request - State: closed - Opened by tcompa 7 months ago - 2 comments

#1432 - Import-dataset endpoint is not checking that images `zarr_url`s are relative to `zarr_dir`

Issue - State: closed - Opened by tcompa 7 months ago - 1 comment
Labels: bug, API, v2

#1431 - Clean up code

Pull Request - State: closed - Opened by ychiucco 7 months ago - 2 comments

#1430 - Include V2 tables in `validate_db_data_with_read_schemas.py`

Pull Request - State: closed - Opened by ychiucco 7 months ago - 4 comments

#1429 - Include V2 tables in `scripts/validate_db_data_with_read_schemas.py`

Issue - State: closed - Opened by tcompa 7 months ago
Labels: testing, db life cycle, v2

#1428 - Code review

Pull Request - State: closed - Opened by tcompa 7 months ago - 2 comments

#1427 - Add basic example

Pull Request - State: closed - Opened by tcompa 7 months ago - 2 comments

#1426 - add image list to dataset in benchmarks

Pull Request - State: closed - Opened by mfranzon 7 months ago - 2 comments

#1425 - Better handling of task collection failure

Pull Request - State: closed - Opened by ychiucco 7 months ago - 4 comments

#1424 - Improve log message

Pull Request - State: closed - Opened by tcompa 7 months ago - 2 comments

#1423 - Workflow execution scaling

Pull Request - State: closed - Opened by ychiucco 7 months ago - 3 comments

#1422 - Review all v2 runner error messages and types

Issue - State: closed - Opened by tcompa 7 months ago - 2 comments
Labels: High Priority, v2

#1421 - Review example notebooks

Issue - State: closed - Opened by tcompa 7 months ago - 1 comment
Labels: documentation, v2

#1420 - Workflow-execution scaling test

Issue - State: closed - Opened by tcompa 7 months ago - 3 comments
Labels: v2

#1419 - Code clean up in view of V2

Issue - State: closed - Opened by tcompa 7 months ago - 1 comment
Labels: v2

#1418 - Review tests

Pull Request - State: closed - Opened by ychiucco 7 months ago - 2 comments

#1417 - Avoid error when parallelizing over empty image list

Pull Request - State: closed - Opened by tcompa 7 months ago - 2 comments

#1416 - Update `status` endpoint

Pull Request - State: closed - Opened by mfranzon 7 months ago - 2 comments

#1415 - When I try to locally collect fractal-tasks-core 0.14.3 on a 2.0.0a9 server, I run into the following error:

Issue - State: closed - Opened by tcompa 7 months ago - 4 comments
Labels: v2

#1414 - TBD: should we forbid PATCH-workflow and/or PATCH-dataset when a job is running?

Issue - State: closed - Opened by tcompa 7 months ago - 4 comments
Labels: API

#1413 - API fixes

Pull Request - State: closed - Opened by ychiucco 7 months ago - 2 comments

#1412 - Do not use `JobStatusTypeV1` type in `JobV2`

Issue - State: closed - Opened by tcompa 7 months ago
Labels: Priority, v2

#1411 - Error in check-task-collection v1

Issue - State: closed - Opened by tcompa 7 months ago - 5 comments
Labels: bug, Priority, task collection, v2

#1410 - Raise 404 if task is missing

Issue - State: closed - Opened by tcompa 7 months ago
Labels: Priority, API, low-hanging-fruit, v2

#1409 - To review: A task argument is set to empty string for no obvious reason

Issue - State: closed - Opened by tcompa 7 months ago - 4 comments
Labels: bug, v2

#1408 - Fixes related to using legacy tasks in V2 workflows

Pull Request - State: closed - Opened by tcompa 7 months ago - 3 comments

#1407 - add import/export endpoints for dataset

Pull Request - State: closed - Opened by mfranzon 7 months ago - 2 comments

#1406 - Return a JSON payload also for 500 errors

Issue - State: open - Opened by zonia3000 7 months ago
Labels: API

#1405 - PATCH-worfklowtask fails when using a V1 task

Issue - State: closed - Opened by tcompa 7 months ago
Labels: bug, High Priority, API, v2

#1404 - Bump gunicorn from 21.2.0 to 22.0.0

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 2 comments
Labels: dependencies

#1403 - Add large image lists to "dataset" power-user in benchmarks

Issue - State: closed - Opened by tcompa 7 months ago - 1 comment
Labels: testing, API, performance, v2

#1402 - Import/export dataset

Issue - State: closed - Opened by jluethi 7 months ago - 5 comments
Labels: API, v2

#1401 - Allow complex filters being set

Issue - State: open - Opened by jluethi 7 months ago - 1 comment

#1400 - Introduce `WorkflowTaskV2Dump.is_legacy_task`

Issue - State: closed - Opened by tcompa 7 months ago
Labels: v2

#1399 - Test/improve running v1 tasks within v2 workflows

Pull Request - State: closed - Opened by tcompa 7 months ago - 2 comments

#1398 - Solves miscellaneous issues

Pull Request - State: closed - Opened by ychiucco 7 months ago - 2 comments

#1397 - [auto] Update dependencies in `poetry.lock`

Pull Request - State: closed - Opened by tcompa 7 months ago - 2 comments

#1396 - `validate_args_non_parallel` still refers to V1 reserved arguments

Issue - State: closed - Opened by tcompa 7 months ago
Labels: bug, v2

#1395 - Raise an error if zarr_url=zarr_dir

Issue - State: closed - Opened by tcompa 7 months ago
Labels: API, v2

#1394 - Clean up tests

Issue - State: closed - Opened by tcompa 7 months ago - 1 comment
Labels: testing, v2

#1393 - Add PATCH SingleImage endpoint

Pull Request - State: closed - Opened by ychiucco 7 months ago - 2 comments

#1392 - Exclude `GET /api/v2/task-legacy/` from benchmarks

Issue - State: closed - Opened by tcompa 7 months ago
Labels: testing, performance, v2

#1391 - Remove obsolete `WorkflowV2` properties

Issue - State: closed - Opened by tcompa 7 months ago
Labels: v2

#1390 - Fix `assemble_history_failed_job` in case of Unknown Error

Issue - State: closed - Opened by tcompa 7 months ago - 1 comment
Labels: bug, High Priority, v2

#1389 - Fix arguments provided to `run_v1_task_parallel`

Issue - State: closed - Opened by tcompa 7 months ago
Labels: bug, v2

#1388 - Alembic sets default boolean to 0 rather than false

Issue - State: closed - Opened by tcompa 7 months ago - 2 comments
Labels: db life cycle, v2

#1387 - Bump idna from 3.6 to 3.7

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 4 comments
Labels: dependencies

#1386 - Remove `read_only` from V2 projects and datasets (close #1384)

Pull Request - State: closed - Opened by tcompa 7 months ago - 2 comments

#1385 - Allow modifying dataset zarr-dir if there is no image yet

Issue - State: closed - Opened by tcompa 7 months ago - 2 comments
Labels: API, v2

#1384 - Does `Is readonly` still have a meaning in Fractal 2.0?

Issue - State: closed - Opened by jluethi 7 months ago - 2 comments
Labels: v2

#1383 - Review benchmark

Issue - State: closed - Opened by tcompa 7 months ago - 1 comment
Labels: testing, performance

#1382 - Re-include START/END logs for each task, in `workflow.log`

Issue - State: closed - Opened by tcompa 7 months ago - 1 comment
Labels: v2, logging

#1381 - Review endpoints to handle V1 tasks within V2

Issue - State: closed - Opened by tcompa 7 months ago
Labels: API, task collection, v2

#1380 - Add PATCH endpoint for single image

Issue - State: closed - Opened by tcompa 7 months ago - 1 comment
Labels: API, v2

#1379 - Introduce endpoints/schemas for handling legacy tasks in V2

Pull Request - State: closed - Opened by ychiucco 7 months ago - 3 comments

#1378 - `ValidationError` should raise a 422

Issue - State: closed - Opened by ychiucco 7 months ago - 2 comments
Labels: task collection, v2

#1377 - Re-enable `test_non_executable_task_command`

Issue - State: open - Opened by tcompa 7 months ago - 2 comments
Labels: testing, v2

#1376 - Fix benchmark GH action

Pull Request - State: closed - Opened by tcompa 7 months ago - 1 comment

#1375 - `is_v2_compatible` as request body

Pull Request - State: closed - Opened by ychiucco 7 months ago - 2 comments

#1374 - To review: populate `image_list_updates` with default values when it is empty

Issue - State: closed - Opened by tcompa 7 months ago - 3 comments
Labels: High Priority, v2

#1373 - Test PATCH workflow task

Pull Request - State: closed - Opened by ychiucco 7 months ago - 2 comments

#1372 - To review: are the `args_parallel` arguments of a compound task actually used?

Issue - State: closed - Opened by tcompa 7 months ago
Labels: testing, v2

#1371 - Runner v2 updates

Pull Request - State: closed - Opened by tcompa 7 months ago - 2 comments

#1370 - Minor fixes for `is_v2_compatible`

Issue - State: closed - Opened by tcompa 7 months ago
Labels: API, v2

#1369 - V2 PATCH-WorkflowTask should replace arguments, rather than updating them

Issue - State: closed - Opened by tcompa 7 months ago
Labels: testing, v2

#1368 - Transform ERROR into WARNING

Issue - State: closed - Opened by tcompa 7 months ago
Labels: v2

#1367 - Enforce `zarr_url` relative to `zarr_dir`

Pull Request - State: closed - Opened by ychiucco 7 months ago - 6 comments

#1366 - Exclude api/v1 from benchmark

Pull Request - State: closed - Opened by ychiucco 7 months ago - 2 comments

#1365 - Bump dependencies

Pull Request - State: closed - Opened by tcompa 7 months ago - 2 comments

#1364 - Fix benchmarks GHA

Pull Request - State: closed - Opened by ychiucco 7 months ago - 2 comments

#1363 - Fix error message in job/submit endpoint

Issue - State: closed - Opened by tcompa 7 months ago
Labels: v2

#1362 - Placeholder: update V2 docs

Issue - State: open - Opened by tcompa 7 months ago
Labels: documentation, v2

#1361 - Fix docs

Pull Request - State: closed - Opened by tcompa 7 months ago - 1 comment

#1360 - Remove parallelisation_level validator from V2

Pull Request - State: closed - Opened by ychiucco 7 months ago - 2 comments

#1359 - Reject empty strings as dictionary keys

Pull Request - State: closed - Opened by ychiucco 7 months ago - 1 comment

#1358 - [auto] Update dependencies in `poetry.lock`

Pull Request - State: closed - Opened by tcompa 7 months ago - 1 comment

#1357 - Change submit-job API tag

Pull Request - State: closed - Opened by ychiucco 7 months ago - 1 comment

#1356 - Re-enable (and fix) docs GHA

Issue - State: closed - Opened by tcompa 7 months ago - 1 comment
Labels: documentation, v2

#1355 - Handle v1/v2 `json_schemas`

Pull Request - State: closed - Opened by ychiucco 7 months ago - 1 comment

#1354 - Reject empty-string keys for several properties

Issue - State: closed - Opened by tcompa 7 months ago
Labels: API, v2

GitHub / fractal-analytics-platform/fractal-server issues and pull requests