flybase/drosophila-phenotype-ontology issues and pull requests

#176 - Replace the old EQWriter tool by a ROBOT plugin.

Pull Request - State: closed - Opened by gouttegd 10 months ago

#175 - release files 2023-12-08

Pull Request - State: closed - Opened by Clare72 10 months ago

#174 - Release 2023-10-19

Pull Request - State: closed - Opened by gouttegd 12 months ago

#173 - Release 2023-08-02.

Pull Request - State: closed - Opened by gouttegd about 1 year ago

#172 - Release 2023 07 05

Pull Request - State: closed - Opened by gouttegd about 1 year ago

#171 - Repository cleanup

Pull Request - State: closed - Opened by gouttegd over 1 year ago

#170 - Release 2023-05-03

Pull Request - State: closed - Opened by gouttegd over 1 year ago

#169 - Redefine 'abnormal aging' to remove dependency on GO:0007568.

Pull Request - State: closed - Opened by gouttegd over 1 year ago

#168 - 'aging' is obsolete in GO

Issue - State: closed - Opened by gouttegd over 1 year ago
Labels: bug

#167 - Test release for the base merging switch

Pull Request - State: closed - Opened by gouttegd over 1 year ago

#166 - Use base merging for imports

Pull Request - State: closed - Opened by gouttegd over 1 year ago - 5 comments

#165 - Update the chado_load_checks script.

Pull Request - State: closed - Opened by gouttegd over 1 year ago

#164 - OWL API and ODK migration

Pull Request - State: closed - Opened by gouttegd over 1 year ago

#163 - Release 2023-02-09

Pull Request - State: closed - Opened by gouttegd over 1 year ago

#162 - obsoletion of GO:0008219 'cell death'

Issue - State: open - Opened by Clare72 over 1 year ago - 16 comments

#161 - reduced synonyms

Pull Request - State: closed - Opened by Clare72 almost 2 years ago

#160 - Release 2022-12-02

Pull Request - State: closed - Opened by gouttegd almost 2 years ago

#159 - Release 2022-10-20

Pull Request - State: closed - Opened by Clare72 almost 2 years ago

#158 - Rate review

Pull Request - State: closed - Opened by Clare72 almost 2 years ago - 1 comment

#157 - Rate review

Pull Request - State: closed - Opened by Clare72 about 2 years ago

#156 - Components and lethal terms

Pull Request - State: closed - Opened by Clare72 about 2 years ago

#155 - Increased and decreased rates

Pull Request - State: closed - Opened by Clare72 about 2 years ago

#154 - Abnormal

Pull Request - State: closed - Opened by Clare72 about 2 years ago

#153 - Learning

Pull Request - State: closed - Opened by Clare72 about 2 years ago

#152 - fbdv_extension

Pull Request - State: closed - Opened by Clare72 about 2 years ago

#151 - Release 2022-08-11

Pull Request - State: closed - Opened by Clare72 about 2 years ago

#150 - Remove object property details from fbdv_extension

Issue - State: closed - Opened by Clare72 about 2 years ago - 3 comments
Labels: enhancement

#149 - Update terms metadata.

Pull Request - State: closed - Opened by gouttegd about 2 years ago - 1 comment

#148 - review 'rate' phenotyes

Issue - State: closed - Opened by Clare72 over 2 years ago - 3 comments
Labels: enhancement

#147 - Increased viability phenotypes

Issue - State: open - Opened by Clare72 over 2 years ago - 2 comments
Labels: new term request

#146 - increased/decreased immune response phenotypes

Issue - State: open - Opened by Clare72 over 2 years ago - 1 comment
Labels: new term request

#145 - increased/decreased efficacy of learning

Issue - State: closed - Opened by Clare72 over 2 years ago
Labels: new term request

#144 - New 'abnormal' phenotypes

Issue - State: closed - Opened by Clare72 over 2 years ago
Labels: new term request

#143 - change 'abnormal flight' to 'abnormal flight behavior'

Issue - State: open - Opened by Clare72 over 2 years ago - 9 comments
Labels: enhancement

#142 - New terms to use increased/decreased rate

Issue - State: closed - Opened by Clare72 over 2 years ago
Labels: new term request

#141 - update_repo done

Pull Request - State: closed - Opened by Clare72 over 2 years ago

#140 - Release 2022-06-09

Pull Request - State: closed - Opened by Clare72 over 2 years ago

#139 - minor edit to oviposition text

Pull Request - State: closed - Opened by Clare72 over 2 years ago

#138 - Hyperplasia

Pull Request - State: closed - Opened by Clare72 over 2 years ago

#137 - Release 2022-04-13

Pull Request - State: closed - Opened by Clare72 over 2 years ago

#136 - Minor makefile edits

Pull Request - State: closed - Opened by Clare72 over 2 years ago

#135 - revert owl report to fail on ERROR

Pull Request - State: closed - Opened by Clare72 over 2 years ago

#134 - ODK update

Pull Request - State: closed - Opened by Clare72 over 2 years ago

#133 - Switch to using new upheno pattern for 'hyperplasia'

Issue - State: closed - Opened by Clare72 over 2 years ago

#132 - edit 'abnormal oviposition'

Issue - State: closed - Opened by Clare72 over 2 years ago

#131 - Release 2022-02-24

Pull Request - State: closed - Opened by Clare72 over 2 years ago

#130 - Release 2022-01-24

Pull Request - State: closed - Opened by Clare72 over 2 years ago

#129 - removing unused has_role relationship from dpo

Pull Request - State: closed - Opened by Clare72 almost 3 years ago

#128 - Release 2021-12-10

Pull Request - State: closed - Opened by Clare72 almost 3 years ago

#127 - FBdv import

Issue - State: closed - Opened by dosumis over 5 years ago - 7 comments

#126 - Odk update

Pull Request - State: closed - Opened by Clare72 almost 3 years ago

#125 - Release 2021-10-15

Pull Request - State: closed - Opened by Clare72 almost 3 years ago

#124 - update_repo done

Pull Request - State: closed - Opened by Clare72 almost 3 years ago

#123 - adding obsolete to labels of obsolete terms

Pull Request - State: closed - Opened by Clare72 almost 3 years ago

#122 - Release 2021-09-02

Pull Request - State: closed - Opened by Clare72 about 3 years ago

#121 - Patternise abnormal touch response

Pull Request - State: closed - Opened by Clare72 about 3 years ago

#120 - Patternise cell death

Pull Request - State: closed - Opened by Clare72 about 3 years ago

#119 - Increased/decreased memory

Pull Request - State: closed - Opened by Clare72 about 3 years ago

#118 - Release 2021-07-15

Pull Request - State: closed - Opened by Clare72 about 3 years ago

#117 - Axiom removal

Pull Request - State: closed - Opened by Clare72 about 3 years ago

#116 - Unpatternised terms

Issue - State: open - Opened by Clare72 about 3 years ago

#115 - Hyperplasia

Pull Request - State: closed - Opened by Clare72 about 3 years ago

#114 - Hyperplasia logical def

Issue - State: closed - Opened by Clare72 about 3 years ago

#113 - Circadian rhythm/behavior phenotypes

Issue - State: open - Opened by Clare72 about 3 years ago

#112 - release files 2021-07-09

Pull Request - State: closed - Opened by Clare72 about 3 years ago

#111 - update_repo done

Pull Request - State: closed - Opened by Clare72 over 3 years ago

#110 - minor edits to definitions of fertility phenotypes

Pull Request - State: closed - Opened by Clare72 over 3 years ago

#109 - 'abnormal developmental rate' pattern

Pull Request - State: closed - Opened by Clare72 over 3 years ago

#108 - minor inconsistencies in the fertile-sterile FBcv term definitions

Issue - State: closed - Opened by arzuozturk over 3 years ago - 5 comments

#107 - 3 FBcv terms are missing 'phenotypic_class' namespace

Issue - State: closed - Opened by gm119 over 3 years ago - 2 comments

#106 - add missing namespace to new phenotypic class terms

Issue - State: closed - Opened by gm119 over 3 years ago - 2 comments

#105 - release 2021-05-12

Pull Request - State: closed - Opened by Clare72 over 3 years ago

#104 - update_repo

Pull Request - State: closed - Opened by Clare72 over 3 years ago

#103 - update_repo done

Pull Request - State: closed - Opened by Clare72 over 3 years ago

#102 - phenotypes for increased/decreased memory

Issue - State: closed - Opened by Clare72 over 3 years ago - 2 comments

#101 - Sleep phenotypes

Issue - State: open - Opened by Clare72 over 3 years ago - 3 comments

#100 - Release 2021-03-11

Pull Request - State: closed - Opened by Clare72 over 3 years ago

#99 - Chebi purl

Pull Request - State: closed - Opened by Clare72 over 3 years ago

#98 - update_repo

Pull Request - State: closed - Opened by Clare72 over 3 years ago

#97 - updated repo for new ODK and regenerated patterns and imports

Pull Request - State: closed - Opened by Clare72 over 3 years ago

#96 - added phenotypic class namespace to 3 terms

Pull Request - State: closed - Opened by Clare72 over 3 years ago

#95 - stop removing ro-eco subset annotations

Pull Request - State: closed - Opened by Clare72 over 3 years ago

#94 - Add back chado load check

Pull Request - State: closed - Opened by Clare72 over 3 years ago

#93 - Release 2021-01-14

Pull Request - State: closed - Opened by Clare72 over 3 years ago

#92 - Lethal merge

Pull Request - State: closed - Opened by Clare72 over 3 years ago

#91 - 'uncoordinated' patternised

Pull Request - State: closed - Opened by Clare72 over 3 years ago

#90 - nbo import and jumping phenotypes

Pull Request - State: closed - Opened by Clare72 almost 4 years ago

#89 - patternised semi-fertile

Pull Request - State: closed - Opened by Clare72 almost 4 years ago

#88 - Behavior rates

Pull Request - State: closed - Opened by Clare72 almost 4 years ago

#65 - WIP: Upgrade to EXPERMENTAL ODK 1.2.22

Pull Request - State: closed - Opened by matentzn over 4 years ago - 2 comments

#63 - Revert QC level to full force when PCO import is fixed

Issue - State: closed - Opened by matentzn over 4 years ago - 1 comment

#48 - New terms: Intracellular/Axonal transport defective

Issue - State: closed - Opened by Clare72 about 6 years ago - 1 comment

#45 - Simplify names for lethal phenotypes

Issue - State: closed - Opened by dosumis almost 6 years ago - 1 comment

#39 - Investigate problem with upper level equivalences

Issue - State: open - Opened by matentzn about 5 years ago - 5 comments

#32 - If release pipeline is set up on new machine mirrors/imports need to be present

Issue - State: closed - Opened by matentzn about 5 years ago - 1 comment

#28 - Assign dpoAbnormalAnatomicalEntityByQuality to uPheno patterns

Issue - State: open - Opened by matentzn about 5 years ago - 2 comments

#24 - Create patterns for normal and abnormal fertility

Issue - State: open - Opened by matentzn about 5 years ago - 1 comment

#23 - dpoIItowards.tsv instances should be moved to abnormallyIncreasedNumberOfAnatomicalEntity

Issue - State: closed - Opened by matentzn about 5 years ago - 2 comments

#22 - We should move `developmental rate defective` to the abnormalProcess pattern

Issue - State: closed - Opened by matentzn about 5 years ago - 8 comments

#14 - Review lethal phenotype patterns

Issue - State: open - Opened by matentzn about 5 years ago - 3 comments

GitHub / flybase/drosophila-phenotype-ontology issues and pull requests