Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / flow-r/flowr issues and pull requests

#101 - adding news, fixing issue with `read_chunk` in older versions of R

Pull Request - State: closed - Opened by sahilseth almost 4 years ago

#100 - new status function

Pull Request - State: closed - Opened by sahilseth about 4 years ago

#99 - Revert "Updated SBATCH params"

Pull Request - State: closed - Opened by sahilseth about 4 years ago

#98 - Create r.yml

Pull Request - State: closed - Opened by sahilseth about 4 years ago

#97 - Devel

Pull Request - State: closed - Opened by sahilseth over 4 years ago

#96 - Updated SBATCH params

Pull Request - State: closed - Opened by sbamin over 4 years ago

#95 - module_cmds missing in rerun

Issue - State: closed - Opened by sahilseth over 4 years ago

#94 - it fails on slurm

Issue - State: open - Opened by wisekh6 almost 5 years ago - 1 comment

#93 - docs.flowr.space domain expired

Issue - State: closed - Opened by meowcat almost 6 years ago - 2 comments

#92 - automatically subset flowmat, incase of `rerun`

Issue - State: closed - Opened by sahilseth almost 6 years ago - 2 comments

#91 - Issue with recent R version, when creating a flowmat

Issue - State: closed - Opened by sahilseth over 6 years ago - 2 comments

#90 - modifying commands/resources before re-running

Issue - State: closed - Opened by wisekh6 over 6 years ago - 1 comment

#89 - merging devel

Pull Request - State: closed - Opened by sahilseth almost 7 years ago

#88 - How to integrate flowr and dplyr

Issue - State: closed - Opened by harryprince about 7 years ago - 1 comment

#87 - error in dependent job tabulation in flow_details.txt for scatter type jobs

Issue - State: closed - Opened by sbamin almost 8 years ago - 1 comment

#86 - merge devel into master 0.9.10.9022

Pull Request - State: closed - Opened by sahilseth almost 8 years ago - 1 comment

#85 - fix for dependency argument for moab scheduler

Pull Request - State: closed - Opened by sbamin almost 8 years ago

#83 - Devel

Pull Request - State: closed - Opened by sahilseth almost 8 years ago

#82 - Fix for #73 and #74.

Pull Request - State: closed - Opened by sahilseth almost 8 years ago

#81 - update dash to using hyphens. Bug in LSF submission.

Pull Request - State: closed - Opened by sahilseth about 8 years ago

#80 - LSF CPU/core/thread request

Issue - State: closed - Opened by sahilseth about 8 years ago - 1 comment

#79 - Job execution on remote grid node

Issue - State: closed - Opened by HowardRoark-xx about 8 years ago - 2 comments

#78 - Fixed slurm support

Pull Request - State: closed - Opened by larsgr about 8 years ago - 2 comments

#77 - Merge into master

Pull Request - State: closed - Opened by sahilseth over 8 years ago

#76 - sge conf should be pbs?

Issue - State: closed - Opened by shjoshi over 8 years ago - 3 comments

#75 - Revert "bugfix for moab scheduler job dependency format"

Pull Request - State: closed - Opened by sahilseth over 8 years ago

#74 - bugfix for moab scheduler job dependency format

Pull Request - State: closed - Opened by dyndna over 8 years ago - 5 comments

#73 - flowr flowdef bug while running scatter-gather approach

Issue - State: closed - Opened by dyndna over 8 years ago - 2 comments

#72 - killing flow with a single job, seems to be an issue

Issue - State: closed - Opened by sahilseth almost 9 years ago - 3 comments

#71 - Update master with support for local repos

Pull Request - State: closed - Opened by sahilseth almost 9 years ago

#70 - fetch shows full path, for better debugging and verbosity

Pull Request - State: closed - Opened by sahilseth almost 9 years ago

#69 - update flowr NEWS

Pull Request - State: closed - Opened by sahilseth almost 9 years ago

#68 - several updates and moving to CRAN

Pull Request - State: closed - Opened by sahilseth almost 9 years ago

#67 - relax flowr's default directory structure.

Issue - State: closed - Opened by sahilseth almost 9 years ago

#66 - issue with to_flow, if a data.frame is supplied, instead of a flowmat.

Issue - State: closed - Opened by sahilseth almost 9 years ago
Labels: tests

#65 - Pattern matching in kill is not always as expected

Issue - State: open - Opened by sahilseth almost 9 years ago
Labels: tests

#64 - Simplify the configuration setup

Issue - State: open - Opened by sahilseth almost 9 years ago - 1 comment
Labels: enhancement

#63 - Update devel

Pull Request - State: closed - Opened by sahilseth almost 9 years ago

#62 - Devel

Pull Request - State: closed - Opened by sahilseth almost 9 years ago

#61 - Add status column in the flow_details from the beginning

Issue - State: open - Opened by sahilseth about 9 years ago
Labels: enhancement

#60 - update master with newer updates, ready for CRAN release

Pull Request - State: closed - Opened by sahilseth about 9 years ago

#59 - rerun ignores platform, when specified via run command

Issue - State: closed - Opened by sahilseth about 9 years ago - 1 comment

#58 - better handling of conf file loading.

Issue - State: open - Opened by sahilseth about 9 years ago
Labels: enhancement

#57 - Use opts_flow$get/set/load instead of get_opts set_opts etc.

Issue - State: closed - Opened by sahilseth about 9 years ago

#56 - preparing for CRAN

Pull Request - State: closed - Opened by sahilseth about 9 years ago

#55 - add ability to set dynamic parameters

Issue - State: open - Opened by sahilseth over 9 years ago
Labels: help wanted

#54 - Ability to re-run after dependency has changed

Issue - State: closed - Opened by PoGibas over 9 years ago - 1 comment

#53 - add changes to master

Pull Request - State: closed - Opened by sahilseth over 9 years ago

#52 - Validation of CPU, and making sure the pattern is correct

Issue - State: closed - Opened by sahilseth over 9 years ago

#51 - add info to news

Pull Request - State: closed - Opened by sahilseth over 9 years ago

#50 - fix status and docs link

Pull Request - State: closed - Opened by sahilseth over 9 years ago

#49 - update docs

Pull Request - State: closed - Opened by sahilseth over 9 years ago

#48 - minor doc changes

Pull Request - State: closed - Opened by sahilseth over 9 years ago

#47 - updates to docs

Pull Request - State: closed - Opened by sahilseth over 9 years ago

#46 - New release

Pull Request - State: closed - Opened by sahilseth over 9 years ago

#45 - update master

Pull Request - State: closed - Opened by sahilseth over 9 years ago

#44 - cran submission

Pull Request - State: closed - Opened by sahilseth over 9 years ago

#43 - Check complex dependency

Issue - State: closed - Opened by sahilseth over 9 years ago

#42 - simple make example

Issue - State: closed - Opened by sahilseth over 9 years ago - 1 comment

#41 - update docs

Pull Request - State: closed - Opened by sahilseth over 9 years ago

#40 - updated with docs etc

Pull Request - State: closed - Opened by sahilseth over 9 years ago

#39 - update readme

Pull Request - State: closed - Opened by sahilseth over 9 years ago

#38 - update docs

Pull Request - State: closed - Opened by sahilseth over 9 years ago

#37 - push fastq_bam to master

Pull Request - State: closed - Opened by sahilseth over 9 years ago

#36 - Getting ready for CRAN

Pull Request - State: closed - Opened by sahilseth over 9 years ago

#35 - Wrapper for flowr bash command

Pull Request - State: closed - Opened by dyndna over 9 years ago - 5 comments

#34 - adding ability to limit max flows

Pull Request - State: closed - Opened by sahilseth over 9 years ago

#33 - Ability to control the max number of flows being run concurrently

Issue - State: closed - Opened by sahilseth over 9 years ago - 2 comments

#32 - important patch on check.flowdef

Pull Request - State: closed - Opened by sahilseth over 9 years ago

#31 - Devel

Pull Request - State: closed - Opened by sahilseth over 9 years ago

#30 - Devel

Pull Request - State: closed - Opened by sahilseth over 9 years ago

#29 - Minor path fixing issues in use cache

Pull Request - State: closed - Opened by sahilseth over 9 years ago

#28 - Adding several new features

Pull Request - State: closed - Opened by sahilseth over 9 years ago

#27 - rerun ability

Issue - State: closed - Opened by sahilseth over 9 years ago - 1 comment

#26 - Devel

Pull Request - State: closed - Opened by sahilseth over 9 years ago

#25 - Font too big for small windows.

Issue - State: closed - Opened by sahilseth over 9 years ago - 1 comment

#24 - Better separation of status from multiple folders

Issue - State: closed - Opened by sahilseth over 9 years ago

#23 - Better error message for to_flowdef

Issue - State: closed - Opened by sahilseth over 9 years ago - 1 comment

#22 - dynamically assign CPUs used from the flowdef.

Issue - State: closed - Opened by sahilseth over 9 years ago - 1 comment

#21 - rerun removes trigger files; ready for rerunning.

Pull Request - State: closed - Opened by sahilseth over 9 years ago

#20 - delete previous triggers when running re-run

Issue - State: closed - Opened by sahilseth over 9 years ago - 1 comment

#19 - fix to_flowmat to remove un-warranted warning messages.

Issue - State: closed - Opened by sahilseth over 9 years ago

#17 - Jobs stuck in the queue

Issue - State: closed - Opened by sahilseth over 9 years ago - 1 comment
Labels: question

#16 - create_jobs_mat

Issue - State: closed - Opened by sahilseth over 9 years ago - 1 comment
Labels: enhancement

#15 - job name of a `job` object is changed after submission

Issue - State: closed - Opened by sahilseth over 9 years ago - 2 comments

#14 - rerun support

Issue - State: closed - Opened by sahilseth over 9 years ago - 2 comments

#13 - bash: "nocobbler on" gives errors with flow status and rerun function.

Issue - State: closed - Opened by dyndna over 9 years ago - 2 comments

#12 - Reduce dependency load

Issue - State: closed - Opened by sahilseth over 9 years ago - 1 comment

#11 - Strict checking of flow definition

Issue - State: closed - Opened by sahilseth over 9 years ago
Labels: enhancement

#10 - feature request submit jobs by priority rather than by jobname

Issue - State: closed - Opened by fpbarthel over 9 years ago - 3 comments
Labels: enhancement, question

#9 - to_flow submission gives error: object 'fobjuuid' not found

Issue - State: closed - Opened by dyndna over 9 years ago - 1 comment

#8 - PBS scheduler errors with qsub submission: && in bash command

Issue - State: closed - Opened by dyndna over 9 years ago - 7 comments

#7 - Adding a new platform

Issue - State: closed - Opened by sahilseth over 9 years ago
Labels: question

#6 - flowr script, not parsing arguments with getOption() properly

Issue - State: closed - Opened by sahilseth over 9 years ago
Labels: enhancement

#5 - A Universal parser for default parameters.

Issue - State: closed - Opened by sahilseth over 9 years ago - 1 comment
Labels: enhancement

#4 - Command to specify email alert only for job killed or error.

Issue - State: closed - Opened by dyndna over 9 years ago - 2 comments
Labels: question

#3 - Switch to, using qsub/bsub scripts rather than one line commands

Issue - State: closed - Opened by sahilseth over 9 years ago - 2 comments
Labels: enhancement

#2 - When creating flow_objet with to_flow command, no output in resulting Rplots.pdf

Issue - State: closed - Opened by dyndna over 9 years ago - 1 comment
Labels: question