Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / flatironinstitute/dendro-old issues and pull requests

#100 - frontend plugins and hodj

Pull Request - State: closed - Opened by magland about 1 year ago

#99 - mearec template generation

Pull Request - State: closed - Opened by magland about 1 year ago - 1 comment

#98 - create MEArec app/processor

Issue - State: open - Opened by magland about 1 year ago

#97 - advanced option: run outside container

Issue - State: open - Opened by magland about 1 year ago

#96 - iaac -> iac

Pull Request - State: closed - Opened by magland about 1 year ago - 1 comment

#95 - show electrode geometry

Pull Request - State: closed - Opened by magland about 1 year ago

#94 - show electrode geometry

Issue - State: closed - Opened by magland about 1 year ago - 1 comment

#93 - reorganize run method for jobs

Pull Request - State: closed - Opened by magland about 1 year ago - 2 comments

#91 - include trials table etc in spike sorting output .nwb file

Issue - State: open - Opened by magland about 1 year ago

#90 - fix check for aws batch app

Pull Request - State: closed - Opened by magland about 1 year ago - 2 comments

#89 - improve compute resource console output

Pull Request - State: closed - Opened by magland about 1 year ago - 2 comments

#85 - improve console output of compute resource controller

Issue - State: closed - Opened by magland about 1 year ago

#84 - IaaC Batch

Pull Request - State: closed - Opened by luiztauffer about 1 year ago - 2 comments

#83 - Error when installing non-batch app

Issue - State: closed - Opened by luiztauffer about 1 year ago - 1 comment
Labels: bug

#82 - Remove requires_gpu parameter

Pull Request - State: closed - Opened by magland about 1 year ago - 1 comment

#81 - Frontend resource requirements

Pull Request - State: closed - Opened by magland about 1 year ago - 1 comment

#80 - Respect job timeout

Pull Request - State: closed - Opened by magland about 1 year ago - 1 comment

#79 - Job required resources

Pull Request - State: closed - Opened by magland about 1 year ago

#78 - Resource utilization log

Pull Request - State: closed - Opened by magland about 1 year ago - 1 comment

#77 - Usage tracking

Pull Request - State: closed - Opened by magland about 1 year ago - 1 comment

#76 - iaac reorganize

Pull Request - State: closed - Opened by magland about 1 year ago - 2 comments

#75 - images

Issue - State: open - Opened by magland about 1 year ago - 1 comment

#74 - jfm updates to iaac-batch

Pull Request - State: closed - Opened by magland about 1 year ago - 2 comments

#73 - Update status and log for AWS Batch jobs

Issue - State: closed - Opened by luiztauffer about 1 year ago - 2 comments
Labels: bug

#72 - Upload small file

Pull Request - State: closed - Opened by magland about 1 year ago - 1 comment

#71 - frontend: show recent projects

Pull Request - State: closed - Opened by magland about 1 year ago

#70 - Error creating spike sorting view

Issue - State: closed - Opened by luiztauffer about 1 year ago - 2 comments
Labels: bug

#69 - dendro api key and submit_job from python

Pull Request - State: closed - Opened by magland about 1 year ago - 1 comment

#68 - raise on not authenticated

Pull Request - State: closed - Opened by magland about 1 year ago - 1 comment

#67 - update release strategy

Pull Request - State: closed - Opened by magland over 1 year ago

#66 - script for loading SI sorting from sorting nwb

Issue - State: closed - Opened by magland over 1 year ago

#65 - implement DENDRO_JOB_CLEANUP_DIR

Pull Request - State: closed - Opened by magland over 1 year ago

#64 - add download bool option for input.get_file()

Pull Request - State: closed - Opened by magland over 1 year ago - 1 comment

#63 - Clean up all files after job complete

Issue - State: closed - Opened by magland over 1 year ago - 1 comment

#62 - remove node name/id throughout

Pull Request - State: closed - Opened by magland over 1 year ago

#61 - Refactor compute resource - Do not require CR restart

Pull Request - State: closed - Opened by magland over 1 year ago - 1 comment

#60 - Add codespell: workflow, config and fix typos it finds

Pull Request - State: closed - Opened by yarikoptic over 1 year ago - 1 comment

#59 - consolidate GUI

Pull Request - State: closed - Opened by magland over 1 year ago

#58 - Export Jobs as JSON files

Issue - State: closed - Opened by luiztauffer over 1 year ago - 2 comments
Labels: new feature

#57 - OSError: Can't synchronously read data (inflate() failed)

Issue - State: closed - Opened by luiztauffer over 1 year ago - 12 comments
Labels: bug

#56 - Make it easy to install pre-approved apps on a compute resource

Issue - State: closed - Opened by magland over 1 year ago
Labels: new feature

#55 - By default do not require CR restart when modifying app configuration

Issue - State: closed - Opened by magland over 1 year ago - 4 comments

#54 - iaac components

Pull Request - State: closed - Opened by luiztauffer over 1 year ago - 2 comments

#53 - support optional types for parameters

Pull Request - State: closed - Opened by magland over 1 year ago - 1 comment

#52 - Improve job form

Pull Request - State: closed - Opened by magland over 1 year ago

#51 - Define required NWB fields in the context models

Issue - State: open - Opened by luiztauffer over 1 year ago - 11 comments
Labels: new feature

#50 - Current Forms limitations

Issue - State: closed - Opened by luiztauffer over 1 year ago - 2 comments

#49 - allow local file for dendro input

Pull Request - State: closed - Opened by magland over 1 year ago - 1 comment

#48 - custom processor app: letter_count

Pull Request - State: closed - Opened by magland over 1 year ago

#47 - Support pydantic v1

Pull Request - State: closed - Opened by magland over 1 year ago - 2 comments

#46 - test crypto keys

Pull Request - State: closed - Opened by magland over 1 year ago

#45 - expand test coverage - slurm compute resource

Pull Request - State: closed - Opened by magland over 1 year ago - 1 comment

#44 - Expand test coverage

Pull Request - State: closed - Opened by magland over 1 year ago - 1 comment

#43 - Question: context.output.set() or context.output.upload() or load/store?

Issue - State: closed - Opened by magland over 1 year ago - 4 comments

#42 - fix get_h5py_file()

Pull Request - State: closed - Opened by magland over 1 year ago

#41 - allow direct url to be passed into InputFile

Pull Request - State: closed - Opened by magland over 1 year ago - 1 comment

#40 - 504 Server Error: Gateway Timeout

Issue - State: closed - Opened by luiztauffer over 1 year ago
Labels: bug

#39 - try pydantic method for models

Pull Request - State: closed - Opened by magland over 1 year ago - 2 comments

#38 - reorganize package

Pull Request - State: closed - Opened by magland over 1 year ago - 2 comments

#37 - Update pypi version

Pull Request - State: closed - Opened by luiztauffer over 1 year ago - 1 comment

#36 - get_h5py_file

Pull Request - State: closed - Opened by luiztauffer over 1 year ago - 9 comments

#35 - pypi release action

Pull Request - State: closed - Opened by luiztauffer over 1 year ago - 4 comments

#34 - rename protocaas -> dendro

Pull Request - State: closed - Opened by magland over 1 year ago - 3 comments

#33 - Pre-validation of NWB electrodes location for SI sorters Apps

Issue - State: open - Opened by luiztauffer over 1 year ago - 1 comment
Labels: new feature

#32 - Error when runing MS5 with embargoed data

Issue - State: closed - Opened by luiztauffer over 1 year ago - 2 comments
Labels: bug

#31 - expand test coverage

Pull Request - State: closed - Opened by magland over 1 year ago - 1 comment

#30 - expand test coverage

Pull Request - State: closed - Opened by magland over 1 year ago - 1 comment

#29 - expand test coverage

Pull Request - State: closed - Opened by magland over 1 year ago

#28 - expand test coverage

Pull Request - State: closed - Opened by magland over 1 year ago - 1 comment

#27 - Manage dashboard with css grid

Pull Request - State: closed - Opened by garrettmflynn over 1 year ago - 6 comments

#26 - test for running job

Pull Request - State: closed - Opened by magland over 1 year ago - 1 comment

#24 - fix api for deploy to vercel

Pull Request - State: closed - Opened by magland over 1 year ago - 1 comment

#23 - Passing results between Processors

Issue - State: closed - Opened by luiztauffer over 1 year ago - 5 comments

#22 - Fix #20

Pull Request - State: closed - Opened by luiztauffer over 1 year ago - 2 comments

#21 - Jobs not running in new Compute Resource

Issue - State: closed - Opened by luiztauffer over 1 year ago - 5 comments
Labels: bug

#20 - Error when starting compute resource

Issue - State: closed - Opened by luiztauffer over 1 year ago

#19 - expand test_sdk.py

Pull Request - State: closed - Opened by magland over 1 year ago - 1 comment

#18 - Use mock http for integration tests

Pull Request - State: closed - Opened by magland over 1 year ago - 1 comment

#17 - use class method for processors

Pull Request - State: closed - Opened by magland over 1 year ago - 1 comment

#16 - compute resource tests

Pull Request - State: closed - Opened by magland over 1 year ago

#15 - coverage testing

Pull Request - State: closed - Opened by magland over 1 year ago - 1 comment

#14 - Switch to flake8

Pull Request - State: closed - Opened by magland over 1 year ago - 1 comment

#13 - pyright for api_helpers

Pull Request - State: closed - Opened by magland over 1 year ago - 1 comment

#12 - format whitespace in api_helpers

Pull Request - State: closed - Opened by magland over 1 year ago

#11 - remove non-generic exceptions

Pull Request - State: closed - Opened by magland over 1 year ago - 1 comment

#10 - setup linting

Pull Request - State: closed - Opened by magland over 1 year ago - 3 comments

#9 - Processors parameterization

Issue - State: closed - Opened by luiztauffer over 1 year ago - 7 comments

#8 - should we use black for code formatting?

Issue - State: closed - Opened by magland over 1 year ago - 4 comments

#7 - fix linter error identified by pyright

Pull Request - State: closed - Opened by magland over 1 year ago - 1 comment

#6 - add tests

Pull Request - State: closed - Opened by magland over 1 year ago - 1 comment

#5 - add comments and handle default app_executable and app_image

Pull Request - State: closed - Opened by magland over 1 year ago

#4 - remove is_generating_spec var

Pull Request - State: closed - Opened by magland over 1 year ago - 2 comments

#3 - app_container to app_image

Pull Request - State: closed - Opened by magland over 1 year ago

#2 - create spec file

Pull Request - State: closed - Opened by luiztauffer over 1 year ago - 1 comment

#1 - figures

Issue - State: closed - Opened by magland over 1 year ago - 4 comments