Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / flatironinstitute/CaImAn issues and pull requests

#1360 - linux run result file not readable in windows gui

Issue - State: open - Opened by lsookie 8 months ago - 5 comments

#1358 - dev->main for release 1.11.1

Pull Request - State: closed - Opened by pgunn 8 months ago

#1358 - dev->main for release 1.11.1

Pull Request - State: closed - Opened by pgunn 8 months ago

#1357 - caimanmanager detect editable

Pull Request - State: closed - Opened by pgunn 8 months ago

#1357 - caimanmanager detect editable

Pull Request - State: closed - Opened by pgunn 8 months ago

#1356 - pip install -e is broken

Issue - State: closed - Opened by pgunn 8 months ago - 4 comments

#1356 - pip install -e is broken

Issue - State: closed - Opened by pgunn 8 months ago - 4 comments

#1355 - Breaking: Upstream tensorflow 2.16 breaks caiman

Issue - State: closed - Opened by pgunn 8 months ago - 3 comments

#1354 - Tracking issue: Caiman and numpy 2.0

Issue - State: open - Opened by pgunn 8 months ago - 1 comment
Labels: type: tracking issue

#1354 - Tracking issue: Caiman and numpy 2.0

Issue - State: open - Opened by pgunn 8 months ago - 2 comments
Labels: type: tracking issue

#1353 - Fix medw loading as b'NoneType' instead of None

Pull Request - State: closed - Opened by ethanbb 8 months ago - 1 comment

#1353 - Fix medw loading as b'NoneType' instead of None

Pull Request - State: closed - Opened by ethanbb 8 months ago - 1 comment

#1350 - Fix map_async call on DirectView causing error

Pull Request - State: closed - Opened by ethanbb 9 months ago - 1 comment

#1350 - Fix map_async call on DirectView causing error

Pull Request - State: closed - Opened by ethanbb 9 months ago - 1 comment

#1348 - map_async causing issue when doing CNMF using ipyparallel

Issue - State: closed - Opened by ethanbb 9 months ago - 5 comments

#1348 - map_async causing issue when doing CNMF using ipyparallel

Issue - State: closed - Opened by ethanbb 9 months ago - 5 comments

#1347 - Timeout

Pull Request - State: closed - Opened by fdeguire03 9 months ago - 1 comment

#1347 - Timeout

Pull Request - State: closed - Opened by fdeguire03 9 months ago - 1 comment

#1345 - typo of os.environment

Issue - State: closed - Opened by rob-the-bot 9 months ago

#1345 - typo of os.environment

Issue - State: closed - Opened by rob-the-bot 9 months ago

#1344 - RTD is broken

Issue - State: closed - Opened by pgunn 9 months ago - 4 comments

#1342 - Dev -> Main for release of 1.11.0

Pull Request - State: closed - Opened by pgunn 9 months ago

#1342 - Dev -> Main for release of 1.11.0

Pull Request - State: closed - Opened by pgunn 9 months ago

#1340 - __pycache__ in caiman_data?

Issue - State: closed - Opened by pgunn 9 months ago - 3 comments

#1340 - __pycache__ in caiman_data?

Issue - State: closed - Opened by pgunn 9 months ago - 3 comments

#1339 - Obsolete dependency python-spams

Issue - State: closed - Opened by pgunn 9 months ago - 3 comments

#1339 - Obsolete dependency python-spams

Issue - State: closed - Opened by pgunn 9 months ago - 3 comments

#1338 - Kernel dying during motion correction

Issue - State: closed - Opened by Mraymon5 9 months ago - 19 comments

#1338 - Kernel dying during motion correction

Issue - State: closed - Opened by Mraymon5 9 months ago - 19 comments

#1337 - fix mat support

Pull Request - State: closed - Opened by pgunn 9 months ago - 4 comments

#1337 - fix mat support

Pull Request - State: closed - Opened by pgunn 9 months ago - 4 comments

#1336 - Matlab support broken due to changes in scipy

Issue - State: closed - Opened by pgunn 9 months ago - 9 comments

#1334 - environment.yml: handle variant and newer condas better

Pull Request - State: closed - Opened by pgunn 9 months ago - 2 comments

#1334 - environment.yml: handle variant and newer condas better

Pull Request - State: closed - Opened by pgunn 9 months ago - 2 comments

#1332 - CNN model cannot be loaded with latest `keras` and `tensorflow`

Issue - State: open - Opened by kushalkolar 9 months ago - 10 comments

#1332 - CNN model cannot be loaded with latest `keras` and `tensorflow`

Issue - State: open - Opened by kushalkolar 9 months ago - 10 comments

#1330 - Motion correction with lazy loading and open multiseries tifffile

Pull Request - State: closed - Opened by RuiOSilva 10 months ago

#1330 - Motion correction with lazy loading and open multiseries tifffile

Pull Request - State: closed - Opened by RuiOSilva 10 months ago

#1329 - Simplify .sbx loading & improve space efficiency; explicitly close memmapped files

Pull Request - State: closed - Opened by ethanbb 10 months ago - 5 comments

#1329 - Simplify .sbx loading & improve space efficiency; explicitly close memmapped files

Pull Request - State: closed - Opened by ethanbb 10 months ago - 5 comments

#1328 - Fixes infinite values in SNR

Pull Request - State: closed - Opened by pseudomanu 10 months ago - 9 comments

#1328 - Fixes infinite values in SNR

Pull Request - State: closed - Opened by pseudomanu 10 months ago - 9 comments

#1326 - Extensions starts with a dot

Pull Request - State: closed - Opened by marberi 10 months ago - 8 comments

#1326 - Extensions starts with a dot

Pull Request - State: closed - Opened by marberi 10 months ago - 8 comments

#1324 - Back to older version of Caiman

Issue - State: closed - Opened by zhouyi0812 10 months ago - 1 comment

#1324 - Back to older version of Caiman

Issue - State: closed - Opened by zhouyi0812 10 months ago - 1 comment

#1309 - If it's possible to install caiman on another drive

Issue - State: closed - Opened by zhouyi0812 10 months ago - 11 comments

#1309 - If it's possible to install caiman on another drive

Issue - State: closed - Opened by zhouyi0812 10 months ago - 11 comments

#1306 - Handle upcoming minor deprecations

Pull Request - State: closed - Opened by EricThomson 10 months ago

#1306 - Handle upcoming minor deprecations

Pull Request - State: closed - Opened by EricThomson 10 months ago

#1305 - Fix problem with using reloaded cnmf object

Pull Request - State: closed - Opened by EricThomson 10 months ago - 3 comments

#1305 - Fix problem with using reloaded cnmf object

Pull Request - State: closed - Opened by EricThomson 10 months ago - 3 comments

#1303 - Handle warnings about upcoming deprecations

Issue - State: open - Opened by EricThomson 10 months ago - 5 comments
Labels: type: enhancement

#1302 - Remove pylab imports

Pull Request - State: closed - Opened by EricThomson 10 months ago - 1 comment

#1302 - Remove pylab imports

Pull Request - State: closed - Opened by EricThomson 10 months ago - 1 comment

#1301 - updated contributors doc

Pull Request - State: closed - Opened by EricThomson 10 months ago - 2 comments

#1301 - updated contributors doc

Pull Request - State: closed - Opened by EricThomson 10 months ago - 2 comments

#1300 - Updated discussion of optimizations in cnmf demo

Pull Request - State: closed - Opened by EricThomson 10 months ago - 1 comment

#1300 - Updated discussion of optimizations in cnmf demo

Pull Request - State: closed - Opened by EricThomson 10 months ago - 1 comment

#1299 - Suggestion: remove SBX loading code and recommend using sbxreader instead

Issue - State: closed - Opened by EricThomson 10 months ago - 27 comments
Labels: type: feature request

#1288 - Handle problem with dff auto-percentile calculation

Pull Request - State: closed - Opened by EricThomson 11 months ago

#1288 - Handle problem with dff auto-percentile calculation

Pull Request - State: closed - Opened by EricThomson 11 months ago

#1287 - Suggestion to incorporate fastplotlib plots in the demos for interactive visualizations

Issue - State: closed - Opened by JohnStout 11 months ago - 16 comments
Labels: type: feature request

#1287 - Suggestion to incorporate fastplotlib plots in the demos for interactive visualizations

Issue - State: closed - Opened by JohnStout 11 months ago - 16 comments
Labels: type: feature request

#1264 - Reloading cnmf object returns bytes rather than string

Issue - State: open - Opened by JohnStout 12 months ago - 8 comments
Labels: type: bug

#1264 - Reloading cnmf object returns bytes rather than string

Issue - State: open - Opened by JohnStout 12 months ago - 8 comments
Labels: type: bug

#1249 - Tracking the same ROIs for multiday recording of a single FOV

Issue - State: open - Opened by annahayoon about 1 year ago - 2 comments
Labels: type: question

#1246 - Add option to save motion correction object

Issue - State: open - Opened by EricThomson about 1 year ago
Labels: type: feature request, type: discussion

#1245 - Tiff File Dimension Error - Volpy Demo

Issue - State: closed - Opened by SRoche14 about 1 year ago - 4 comments

#1243 - fix version string

Pull Request - State: closed - Opened by pgunn about 1 year ago

#1240 - How to do motion correction based on 2nd channel (red channel)?

Issue - State: closed - Opened by nspiller about 1 year ago - 6 comments
Labels: type: question

#1239 - WIP: CNMFParams overhaul

Pull Request - State: closed - Opened by pgunn about 1 year ago - 13 comments

#1236 - all these correlation functions

Issue - State: open - Opened by kushalkolar about 1 year ago - 1 comment
Labels: type: discussion

#1235 - scipy.sparse.csc` namespace is deprecated.

Issue - State: closed - Opened by EricThomson about 1 year ago - 7 comments

#1233 - Remove slurm integration

Pull Request - State: closed - Opened by pgunn about 1 year ago - 1 comment

#1231 - Error when the input tif file consisting of 3D images

Issue - State: closed - Opened by Anti-Involution about 1 year ago - 2 comments
Labels: type: bug

#1230 - Multi ci

Pull Request - State: closed - Opened by bendichter about 1 year ago - 1 comment

#1228 - add test workflow

Pull Request - State: closed - Opened by bendichter about 1 year ago - 10 comments

#1227 - openCV issue when playing the movie

Issue - State: open - Opened by andrestrocyte about 1 year ago - 21 comments
Labels: type: bug

#1226 - Add codespell: workflow, config and fix typos it finds

Pull Request - State: closed - Opened by yarikoptic about 1 year ago - 7 comments

#1225 - try to get CI working

Pull Request - State: closed - Opened by bendichter about 1 year ago - 15 comments

#1222 - movie save scales each frame: this introduces artifacts

Issue - State: open - Opened by EricThomson about 1 year ago - 3 comments
Labels: type: discussion

#1221 - Design Discussion: Execution Context

Issue - State: open - Opened by pgunn about 1 year ago - 5 comments
Labels: type: discussion

#1220 - Possible issue: clustering hurts motion correction

Issue - State: closed - Opened by pgunn about 1 year ago - 7 comments

#1219 - Downsampling cnmfe parameters in initialization

Issue - State: open - Opened by zhouyi0812 about 1 year ago - 2 comments
Labels: type: question

#1218 - Tracking: Easier support for externally defined neurons

Issue - State: open - Opened by pgunn about 1 year ago
Labels: type: tracking issue

#1217 - Document file formats people can bring to caiman

Pull Request - State: closed - Opened by pgunn about 1 year ago - 2 comments

#1216 - WIP: document file formats

Pull Request - State: closed - Opened by pgunn about 1 year ago - 1 comment

#1214 - cluster.py:setup_cluster() - cleanups, make 'single' backend

Pull Request - State: closed - Opened by pgunn about 1 year ago - 1 comment

#1213 - Tracking: slurm cleanup

Issue - State: closed - Opened by pgunn about 1 year ago - 4 comments
Labels: type: tracking issue

#1212 - Tracking: setup_cluster and None

Issue - State: closed - Opened by pgunn about 1 year ago - 2 comments
Labels: type: tracking issue

#1211 - Refactor CLI demos to be applications

Pull Request - State: closed - Opened by pgunn about 1 year ago - 10 comments

#1209 - Volpy issue while running on HPC cluster - Tensor Flow and Qt platform plugin

Issue - State: closed - Opened by carolinezphysics about 1 year ago - 7 comments
Labels: type: question

#1207 - CNMFE notebook update

Pull Request - State: open - Opened by EricThomson over 1 year ago - 1 comment

#1206 - Ways to improve nb_correlation_pnr

Issue - State: open - Opened by EricThomson over 1 year ago - 3 comments
Labels: type: feature request

#1204 - Maximum Recursion Depth Reached Error

Issue - State: open - Opened by pgunn over 1 year ago - 11 comments
Labels: type: question