Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / flatironinstitute/CaImAn issues and pull requests

#1452 - Fix incorrect framerate when loading bidirectional SBX files

Pull Request - State: closed - Opened by ethanbb 5 days ago - 1 comment

#1451 - manual annotation in the VolPy GUI. problem

Issue - State: open - Opened by Vignesh-786 6 days ago

#1450 - CNMF Errors/Trouble Shooting

Issue - State: open - Opened by ViciousPlants 7 days ago

#1449 - Merge dev for release 1.11.4

Pull Request - State: closed - Opened by pgunn 8 days ago

#1448 - l1_ratio in cnmf.paras.init for call to NMF()

Pull Request - State: closed - Opened by pgunn 8 days ago - 1 comment

#1446 - Add npy support to load_memmap

Pull Request - State: closed - Opened by fdeguire03 14 days ago - 6 comments

#1446 - Add npy support to load_memmap

Pull Request - State: closed - Opened by fdeguire03 14 days ago - 6 comments

#1445 - Fix CI again

Pull Request - State: closed - Opened by pgunn 16 days ago

#1441 - IndexError in update_temporal_components when running CNMF on images

Issue - State: open - Opened by DrDaheeJang about 1 month ago - 8 comments

#1440 - trouble installing caiman

Issue - State: closed - Opened by pristscats about 1 month ago - 13 comments

#1439 - Improve get_file_size efficiency for .npy files

Pull Request - State: closed - Opened by fdeguire03 about 1 month ago - 3 comments

#1438 - Confusion about the consensus_regions.json

Issue - State: open - Opened by importZL about 1 month ago - 1 comment

#1437 - Update movies.py

Pull Request - State: closed - Opened by darikoneil about 1 month ago

#1437 - Update movies.py

Pull Request - State: closed - Opened by darikoneil about 1 month ago

#1436 - caiman.base.movies.get_file_size fix

Pull Request - State: closed - Opened by darikoneil about 1 month ago - 1 comment

#1436 - caiman.base.movies.get_file_size fix

Pull Request - State: closed - Opened by darikoneil about 1 month ago - 1 comment

#1435 - remove skcuda stuff from docs

Pull Request - State: closed - Opened by kushalkolar about 1 month ago - 1 comment

#1434 - Windows users: use pip and compile it

Pull Request - State: closed - Opened by pgunn about 1 month ago - 1 comment

#1434 - Windows users: use pip and compile it

Pull Request - State: closed - Opened by pgunn about 1 month ago - 1 comment

#1433 - Remove skcuda from motion_correction. Implements #1416

Pull Request - State: closed - Opened by pgunn about 2 months ago

#1432 - Move dependencies into pyproject

Pull Request - State: closed - Opened by pgunn about 2 months ago - 1 comment

#1431 - Numpy support

Issue - State: closed - Opened by darikoneil about 2 months ago - 32 comments

#1428 - L1_ratio in sparseNMF

Issue - State: closed - Opened by clee162 about 2 months ago - 11 comments

#1426 - RuntimeWarning: invalid value encountered in divide

Issue - State: open - Opened by clee162 2 months ago - 1 comment

#1419 - How to specify temp files

Issue - State: closed - Opened by ziqihugo 3 months ago - 8 comments

#1418 - 1P motion correction parameters

Issue - State: open - Opened by melkalliny 3 months ago

#1417 - Add dependencies to `pyproject.toml`

Issue - State: closed - Opened by sneakers-the-rat 3 months ago - 7 comments

#1416 - Propose removing old unmaintained skcuda code

Issue - State: closed - Opened by kushalkolar 3 months ago - 2 comments

#1414 - IncompleteRead Error while trying to load demo videos

Issue - State: open - Opened by raymondwjang 3 months ago - 8 comments

#1411 - Demo Notebook for onACID

Issue - State: closed - Opened by raymondwjang 3 months ago - 3 comments

#1410 - Fix docstrings important for seeded initialization

Pull Request - State: closed - Opened by kushalkolar 4 months ago - 1 comment

#1408 - What is the best way to estimate event rate in 1p using CaImAn?

Issue - State: open - Opened by programerkotik 4 months ago - 1 comment

#1407 - Poor outcome of PW-Rigid Motion Correction on 2P Data

Issue - State: open - Opened by mohammadsohaib 4 months ago - 4 comments

#1406 - Add winget instructions for dev mode Windows installation

Pull Request - State: closed - Opened by ethanbb 4 months ago - 3 comments

#1405 - Try to use pytest for tests

Pull Request - State: closed - Opened by hmaarrfk 4 months ago - 1 comment

#1404 - Saving motion corrected movies results in shifted image for multiple frames

Issue - State: closed - Opened by smbaca 4 months ago - 5 comments

#1403 - are red traces from two images comparable?

Issue - State: open - Opened by XiaoqianSun0104 4 months ago - 2 comments

#1401 - How do I change the path to the temp folder?

Issue - State: closed - Opened by ichigomikako 5 months ago - 3 comments

#1399 - Installation Issues

Issue - State: closed - Opened by CeeLo 5 months ago - 1 comment

#1398 - environment issue when install caiman

Issue - State: open - Opened by Sonder-193 5 months ago - 13 comments

#1397 - way to executing demo notebook in bulk

Issue - State: closed - Opened by kazugorira 5 months ago - 4 comments

#1396 - Pytorch dev

Pull Request - State: open - Opened by manuelpaeza 5 months ago

#1394 - 3D movie

Issue - State: closed - Opened by rajlakshmi-sawale 5 months ago

#1393 - motion correction breaks when tif file carries channel data

Issue - State: open - Opened by ashwin-miriyala 5 months ago - 2 comments

#1392 - Free up memory in MotionCorrect.py / apply_shifts_movie function

Pull Request - State: closed - Opened by deMalmazet 5 months ago - 1 comment

#1391 - only algos

Pull Request - State: open - Opened by kushalkolar 5 months ago - 3 comments

#1390 - caiman core

Pull Request - State: closed - Opened by kushalkolar 5 months ago - 1 comment

#1390 - caiman core

Pull Request - State: closed - Opened by kushalkolar 5 months ago - 1 comment

#1389 - CaImAn GUI 'viewing component' param not working

Issue - State: open - Opened by caichangjia 5 months ago - 1 comment

#1389 - CaImAn GUI 'viewing component' param not working

Issue - State: open - Opened by caichangjia 5 months ago - 1 comment

#1388 - "Bad file descriptor" error during processing

Issue - State: open - Opened by programerkotik 5 months ago - 3 comments

#1386 - Compare kind of dtype rather than dtype itself

Pull Request - State: closed - Opened by ethanbb 6 months ago

#1383 - Pytorch dev

Pull Request - State: closed - Opened by manuelpaeza 6 months ago

#1383 - Pytorch dev

Pull Request - State: closed - Opened by manuelpaeza 6 months ago

#1380 - dev to main for release 1.11.3

Pull Request - State: closed - Opened by pgunn 6 months ago

#1380 - dev to main for release 1.11.3

Pull Request - State: closed - Opened by pgunn 6 months ago

#1379 - dev to main for release 1.11.2

Pull Request - State: closed - Opened by pgunn 6 months ago

#1379 - dev to main for release 1.11.2

Pull Request - State: closed - Opened by pgunn 6 months ago

#1378 - Logging cleanup

Pull Request - State: closed - Opened by pgunn 6 months ago - 1 comment

#1378 - Logging cleanup

Pull Request - State: closed - Opened by pgunn 6 months ago - 1 comment

#1376 - Fine-grained logging, and/or CNMF.fit() logging adjustments

Issue - State: closed - Opened by pgunn 6 months ago - 3 comments
Labels: enhancement

#1376 - Fine-grained logging, and/or CNMF.fit() logging adjustments

Issue - State: closed - Opened by pgunn 6 months ago - 3 comments
Labels: enhancement

#1374 - How to disable logging?

Issue - State: closed - Opened by nick-youngblut 6 months ago - 28 comments

#1373 - Docs: add info on env variables

Issue - State: closed - Opened by nick-youngblut 6 months ago - 8 comments

#1373 - Docs: add info on env variables

Issue - State: closed - Opened by nick-youngblut 6 months ago - 8 comments

#1370 - Get correct centers of mass from rois.com even when swap_dim is True in get_contours

Pull Request - State: closed - Opened by ethanbb 7 months ago - 6 comments

#1370 - Get correct centers of mass from rois.com even when swap_dim is True in get_contours

Pull Request - State: closed - Opened by ethanbb 7 months ago - 6 comments

#1369 - caiman manager install fails

Issue - State: closed - Opened by smbaca 7 months ago - 5 comments

#1369 - caiman manager install fails

Issue - State: closed - Opened by smbaca 7 months ago - 5 comments

#1368 - Question/issue with register_multisession

Issue - State: closed - Opened by JohnStout 7 months ago - 1 comment

#1368 - Question/issue with register_multisession

Issue - State: closed - Opened by JohnStout 7 months ago - 1 comment

#1367 - Make Keras 2 available for TensorFlow 2.16.1

Pull Request - State: open - Opened by ethanbb 7 months ago - 5 comments

#1365 - Added bokeh implementation of view_quilt

Pull Request - State: closed - Opened by salehtahini 7 months ago - 3 comments

#1365 - Added bokeh implementation of view_quilt

Pull Request - State: closed - Opened by salehtahini 7 months ago - 3 comments

#1364 - Input Array Dimension for concatenation size error

Issue - State: open - Opened by kg3354 7 months ago - 12 comments

#1363 - Fix removeBL for 3D movies

Pull Request - State: closed - Opened by ethanbb 7 months ago - 10 comments

#1363 - Fix removeBL for 3D movies

Pull Request - State: closed - Opened by ethanbb 7 months ago - 10 comments

#1361 - bas_nonneg=False when p=0

Issue - State: open - Opened by wienecke 8 months ago

#1361 - bas_nonneg=False when p=0

Issue - State: open - Opened by wienecke 8 months ago

#1360 - linux run result file not readable in windows gui

Issue - State: open - Opened by lsookie 8 months ago - 5 comments