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GitHub / flatironinstitute/CaImAn-MATLAB issues and pull requests

#112 - run_CNMF_patches indices compatibility

Issue - State: open - Opened by hyewkim over 4 years ago - 1 comment

#111 - ERROR:Unrecognized function or variable 'graph_conn_comp_mex'.

Issue - State: open - Opened by albitcaban almost 5 years ago - 2 comments

#100 - Question regarding the hard-coded 65x65 search frame

Issue - State: closed - Opened by wenxuanliang almost 6 years ago - 1 comment

#99 - How to tune eta and beta for sparse_NMF_initialization.m

Issue - State: closed - Opened by wenxuanliang almost 6 years ago - 4 comments

#98 - Question on PSD Calculation

Issue - State: closed - Opened by wenxuanliang almost 6 years ago - 10 comments

#97 - Error using get_noise_fft (line 13) Too many output arguments.

Issue - State: open - Opened by tochenan about 6 years ago - 4 comments

#96 - run_pipeline error - Undefined function or variable 'NoRMCorreSetParms'.

Issue - State: closed - Opened by tochenan about 6 years ago - 1 comment

#95 - Error using parallel.FevalFuture/fetchNext

Issue - State: closed - Opened by 674067482 about 6 years ago - 1 comment

#94 - error in demo_endoscope

Issue - State: closed - Opened by elizabethpereida about 6 years ago - 1 comment

#93 - demo_endoscope

Issue - State: closed - Opened by zoranne over 6 years ago - 1 comment

#92 - exp2 kernel error in cvx_foopsi

Issue - State: closed - Opened by jrclimer over 6 years ago - 6 comments

#91 - DEMO_pipeline

Issue - State: closed - Opened by Mocambo90 over 6 years ago - 9 comments

#90 - Optimization of time constants when solving the AR2 Model

Issue - State: closed - Opened by ehennestad over 6 years ago - 6 comments

#89 - F_dff time shifted compared to F_full?

Issue - State: closed - Opened by grego1979 over 6 years ago - 2 comments

#88 - detrend_df_f

Issue - State: closed - Opened by grego1979 over 6 years ago

#87 - Error run_pipeline.m -- sizY?

Issue - State: closed - Opened by akim5651 over 6 years ago - 2 comments

#86 - Processing many .tif files

Issue - State: closed - Opened by PhantomSpike over 6 years ago - 1 comment

#84 - importKerasNetwork

Issue - State: closed - Opened by grego1979 almost 7 years ago - 3 comments

#83 - process multiple sessions using run_pipeline

Issue - State: closed - Opened by chunyueli almost 7 years ago - 4 comments

#82 - Order of components obtained by "demo_patches.m" ?

Issue - State: closed - Opened by hubhubhang almost 7 years ago - 2 comments

#81 - Memory error using demo_patches

Issue - State: closed - Opened by hubhubhang almost 7 years ago - 3 comments

#80 - Tips on using demo_patch ?

Issue - State: closed - Opened by hubhubhang almost 7 years ago - 1 comment

#79 - run_pipeline error

Issue - State: closed - Opened by szocs93 almost 7 years ago - 8 comments

#77 - Error in CNM.fitPatches

Issue - State: closed - Opened by JSignoretGenest almost 7 years ago - 3 comments

#76 - paste centroids of neurons as a ROI_list

Issue - State: closed - Opened by LoOthar almost 7 years ago - 2 comments

#75 - ROI_GUI.m requires 8 varargin, but gets only 6 in pipeline.m

Issue - State: closed - Opened by pgoltstein almost 8 years ago - 9 comments

#74 - finishing GUI, debugging and creating a test

Pull Request - State: closed - Opened by jkobject almost 8 years ago

#73 - reparing the reported issue

Pull Request - State: closed - Opened by jkobject almost 8 years ago

#72 - Reference to non-existing field in new ROI_GUI.m code

Issue - State: closed - Opened by HagaiHargil about 8 years ago - 21 comments

#71 - new GUI.

Pull Request - State: closed - Opened by jkobject about 8 years ago

#70 - Adding a live script

Pull Request - State: closed - Opened by jkobject about 8 years ago

#69 - improved demo efficiency

Pull Request - State: closed - Opened by agiovann about 8 years ago - 3 comments

#68 - refactoring demo for neurofinder02.00

Pull Request - State: closed - Opened by agiovann about 8 years ago

#67 - Error in register_ROI.m

Issue - State: closed - Opened by masa6161 about 8 years ago - 9 comments

#66 - Fix single patch bug

Pull Request - State: closed - Opened by jennan about 8 years ago - 1 comment

#65 - greedyROI: clrear data matrix, avoid out-of-memory in nnmf call

Pull Request - State: closed - Opened by YishGene about 8 years ago - 1 comment

#64 - Implementation for neurofinder/spikefinder challenges

Issue - State: closed - Opened by alexklibisz about 8 years ago - 2 comments

#63 - Error When running pipeline script

Issue - State: closed - Opened by vd2309 about 8 years ago - 5 comments

#62 - estimated spikes not returned by run_CNMF_patches

Issue - State: closed - Opened by jennan about 8 years ago - 1 comment

#61 - refactoring run_CNMF_patches

Pull Request - State: closed - Opened by jennan over 8 years ago - 1 comment

#60 - Finding relevant coordinates from Coor variable for each file

Issue - State: closed - Opened by HagaiHargil over 8 years ago - 2 comments

#59 - Errors while handling loaded workspace variables as input

Issue - State: closed - Opened by HagaiHargil over 8 years ago - 3 comments

#58 - utilities from vhtools_mltbx_toolbox

Pull Request - State: closed - Opened by stevevanhooser over 8 years ago - 1 comment

#57 - added some Matlab-style documentation and extra documentation to some…

Pull Request - State: closed - Opened by stevevanhooser over 8 years ago - 2 comments

#56 - Memory issue in get_noise_fft

Pull Request - State: closed - Opened by YishGene over 8 years ago - 2 comments

#55 - demo_3d.m throws error at update_spatial_components

Issue - State: closed - Opened by aandreev0 over 8 years ago - 3 comments

#54 - "N-dimensional indexing allowed for full matrices only."

Issue - State: closed - Opened by m0userat25 over 8 years ago - 2 comments

#53 - bug in memmap_file

Issue - State: closed - Opened by Enakcihc over 8 years ago - 1 comment

#52 - bugs in Update_spatial_lasso and classify_comp_corr

Pull Request - State: closed - Opened by dpacheco0921 over 8 years ago

#50 - run_CNMF_patches, out of memory errors

Issue - State: closed - Opened by marius10p almost 9 years ago - 6 comments

#49 - merge two OASIS folders, remove unnecessary files from CNMF-E

Pull Request - State: closed - Opened by zhoupc almost 9 years ago

#48 - fix a typo in deconvolveCa.m

Pull Request - State: closed - Opened by zhoupc almost 9 years ago

#47 - add a wrapper for all deconvolution algorithms

Pull Request - State: closed - Opened by zhoupc almost 9 years ago

#46 - Bug + make IND sparse

Pull Request - State: closed - Opened by dpacheco0921 almost 9 years ago

#45 - Minor changes

Pull Request - State: closed - Opened by dpacheco0921 almost 9 years ago - 1 comment

#44 - Same scaling of YrA as C and S. YrA provided as optional input. nA pr…

Pull Request - State: closed - Opened by farznaj almost 9 years ago

#43 - Update get_noise_fft.m

Pull Request - State: closed - Opened by dpacheco0921 almost 9 years ago - 1 comment

#42 - Update order_ROIs.m

Pull Request - State: closed - Opened by farznaj almost 9 years ago

#41 - Update update_temporal_components.m

Pull Request - State: closed - Opened by farznaj about 9 years ago

#40 - bug in run_CNMF_patches

Issue - State: closed - Opened by dpacheco0921 about 9 years ago - 1 comment

#39 - bugs when handling 3D data

Issue - State: closed - Opened by dpacheco0921 about 9 years ago - 1 comment

#38 - latest update to update_temporal_components is incompatible with memory mapping

Issue - State: closed - Opened by Selmaan about 9 years ago - 1 comment

#37 - Fix two resizing bugs

Pull Request - State: closed - Opened by fabiansinz about 9 years ago - 2 comments

#36 - Bugfix view_components

Pull Request - State: closed - Opened by YishGene about 9 years ago - 2 comments

#35 - Update merge_components.m

Pull Request - State: closed - Opened by farznaj about 9 years ago - 2 comments

#34 - Update initialize_components.m

Pull Request - State: closed - Opened by farznaj about 9 years ago

#33 - Update CNMFSetParms.m

Pull Request - State: closed - Opened by farznaj about 9 years ago

#32 - Update order_ROIs.m

Pull Request - State: closed - Opened by farznaj about 9 years ago - 1 comment

#31 - Update threshold_components.m

Pull Request - State: closed - Opened by farznaj about 9 years ago

#30 - Update extract_DF_F.m

Pull Request - State: closed - Opened by farznaj about 9 years ago

#29 - extracting spike rate from traces

Issue - State: closed - Opened by vd2309 about 9 years ago - 1 comment

#28 - Update postProcessCNMF.m

Pull Request - State: closed - Opened by NTCColumbia about 9 years ago

#27 - Add Use-input ROIs and Result Visualization

Pull Request - State: closed - Opened by NTCColumbia about 9 years ago

#26 - error in make_patch_video

Issue - State: closed - Opened by vd2309 about 9 years ago - 3 comments

#25 - Coor.x'*A(:,1:nr)./sum(A(:,1:nr));

Issue - State: closed - Opened by vd2309 about 9 years ago - 2 comments

#24 - Master

Pull Request - State: closed - Opened by zhoupc about 9 years ago

#23 - add new initialization method based on local correlation

Pull Request - State: closed - Opened by zhoupc about 9 years ago

#22 - new initialization method based on local correlation and SNR

Pull Request - State: closed - Opened by zhoupc about 9 years ago

#21 - The inferred and raw trace(filtered)

Issue - State: closed - Opened by yatangli over 9 years ago - 1 comment

#20 - Error using cvxprob

Issue - State: closed - Opened by jafphd over 9 years ago - 3 comments

#19 - Support for multiple background components (nb>1).

Pull Request - State: closed - Opened by ingiehong over 9 years ago - 1 comment

#18 - Update README URLs based on HTTP redirects

Pull Request - State: closed - Opened by ReadmeCritic over 9 years ago

#17 - bug in merge_components when not using fast_merge

Issue - State: closed - Opened by jpakan over 9 years ago - 1 comment

#16 - greedy + sparse initialization

Issue - State: closed - Opened by gregoriog over 9 years ago - 2 comments

#15 - cvx error

Issue - State: closed - Opened by gregoriog over 9 years ago - 2 comments

#14 - another glitch in the demo script

Issue - State: closed - Opened by urslu over 9 years ago - 1 comment

#13 - get_noise_fft fails in R2015b

Issue - State: closed - Opened by YishGene over 9 years ago

#12 - interactive component plot

Pull Request - State: closed - Opened by agiovann over 9 years ago

#11 - added method for manual component refinement

Pull Request - State: closed - Opened by agiovann over 9 years ago

#10 - Update bigread2.m

Pull Request - State: closed - Opened by dspeterka over 9 years ago

#9 - Error in demoscript

Issue - State: closed - Opened by jk1224 over 9 years ago - 6 comments

#8 - Ben dev

Pull Request - State: closed - Opened by benvermaercke over 9 years ago

#6 - input to update_order is A = [A,b]. Is that correct?

Issue - State: closed - Opened by agiovann over 9 years ago - 1 comment

#5 - Add a Gitter chat badge to README.md

Pull Request - State: closed - Opened by gitter-badger over 9 years ago

#4 - demo_script stops at error

Issue - State: closed - Opened by Vanwalleghem almost 10 years ago - 1 comment

#3 - fix path precedence for lars_regression_noise

Pull Request - State: closed - Opened by llerussell almost 10 years ago - 1 comment