fhcrc/taxtastic issues and pull requests

#71 - drop support for excel imputs

Issue - State: closed - Opened by nhoffman over 9 years ago - 1 comment

#70 - generate docs using CLI help text

Issue - State: closed - Opened by nhoffman over 9 years ago - 1 comment

#69 - update_taxids requires seq_info when just list of taxids would suffice

Issue - State: closed - Opened by tyleraland over 9 years ago - 2 comments

#68 - query ncbi entrez for accession tax_ids

Pull Request - State: closed - Opened by crosenth almost 10 years ago - 2 comments

#67 - UnicodeDecodeError

Issue - State: closed - Opened by GuangchuangYu almost 10 years ago - 5 comments

#66 - Suppress warning on `taxit update` of `tree_stats`

Pull Request - State: closed - Opened by cmccoy over 10 years ago

#65 - Error initializing submodule html

Issue - State: closed - Opened by crosenth over 10 years ago - 3 comments

#64 - Empirical frequencies for phyml?

Pull Request - State: closed - Opened by matsen over 10 years ago - 1 comment

#63 - FastTree AA models should have `empirical_frequencies: false`

Pull Request - State: closed - Opened by cmccoy over 10 years ago

#62 - Doesn't make an "empirical_frequencies" key when doing AA for phyml

Pull Request - State: closed - Opened by matsen almost 11 years ago

#61 - Latest PhyML stats files fail parsing

Pull Request - State: closed - Opened by cmccoy about 11 years ago

#60 - Subcommand to add nodes to taxtable

Pull Request - State: closed - Opened by cmccoy almost 12 years ago

#59 - is_classified should operate on species name only instead of each tax_name

Pull Request - State: closed - Opened by nhoffman almost 12 years ago

#58 - taxtastic-0.4.0 installation error

Issue - State: closed - Opened by koadman almost 12 years ago - 1 comment

#53 - integrate rppr infer into taxit

Issue - State: closed - Opened by matsen almost 13 years ago

#52 - confirm and test that version number with git sha makes it into refpkg metadata

Issue - State: closed - Opened by nhoffman almost 13 years ago

#47 - issue in docs on ghpages should follow taxtastic.init..version.

Issue - State: closed - Opened by nhoffman almost 13 years ago - 1 comment

#45 - Update readme

Issue - State: closed - Opened by madhadron almost 13 years ago

#35 - look into incorporating greengenes taxonomy into taxtastic

Issue - State: closed - Opened by nhoffman about 13 years ago - 2 comments

Ecosyste.ms: Issues

GitHub / fhcrc/taxtastic issues and pull requests