Ecosyste.ms: Issues
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GitHub / fgrcl/ml-bp-estimation issues and pull requests
#117 - Add setup for learning curve analysis
Pull Request -
State: closed - Opened by FGRCL about 1 year ago
#116 - Chen v2
Pull Request -
State: closed - Opened by FGRCL about 1 year ago
#115 - remove fork wandb process
Pull Request -
State: closed - Opened by FGRCL about 1 year ago
#114 - Update requirements version and fix tests
Pull Request -
State: closed - Opened by FGRCL about 1 year ago
#113 - Prepare sweeps
Pull Request -
State: closed - Opened by FGRCL about 1 year ago
#112 - Literature models
Pull Request -
State: closed - Opened by FGRCL about 1 year ago
#111 - enable Time tazarv to work witha single time step output
Pull Request -
State: closed - Opened by FGRCL about 1 year ago
#110 - add shuffling to all preprocessing pipelines and add some performance…
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#109 - create a callback to restore the weights which the model performs the…
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#108 - Transformer
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#107 - Implement transformer model
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#106 - Beatsequence multistep
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#105 - fix a bug that filtered out all inputs when using the ppg signal
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#104 - reorganize the unit and integration tests to the same folder
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#103 - remove transformerencoder_seq.yaml
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#102 - set the best hyperparameters for the rnnmlp and transformerencoder
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#101 - sample the worst performing samples
Issue -
State: closed - Opened by FGRCL over 1 year ago
#100 - Plot the distribution of errors per batches
Issue -
State: closed - Opened by FGRCL over 1 year ago
#99 - Add integration tests
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#98 - Hyperparameter optimization
Issue -
State: closed - Opened by FGRCL over 1 year ago
#97 - Regression undersampling
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#96 - Create an option on preprocessing pipelines to scale the signal for a whole patient with the same mean and standard deviation
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#95 - Add the spectro temporal block to the slapnicar model
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#94 - Integration tests
Issue -
State: closed - Opened by FGRCL over 1 year ago
#93 - Add a preprocessing to use long time windows and a simpleRnn model to use it
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#92 - Compare the RNN and MLP model
Issue -
State: open - Opened by FGRCL over 1 year ago
#91 - Run sweeps on the amount of beats with the beatsequence preprocessing
Issue -
State: open - Opened by FGRCL over 1 year ago
#90 - Optimization Hyperparameters
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#89 - Debug thresholded metric returning nan when receiving empty arrays
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#88 - Experiment with using the entire signal as timeseries training
Issue -
State: open - Opened by FGRCL over 1 year ago
#87 - add an option to use a simpleRNN for the rnnmlp model
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#86 - Simplify the dataset configuration
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#85 - Etl configs
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#84 - add a regular rnn option to the RNN-MLP model
Issue -
State: closed - Opened by FGRCL over 1 year ago
#83 - Create metrics to measure performance below 50 mmHg and above 150 mmHg
Issue -
State: closed - Opened by FGRCL over 1 year ago
#83 - Create metrics to measure performance below 50 mmHg and above 150 mmHg
Issue -
State: closed - Opened by FGRCL over 1 year ago
#82 - Add a metric to to evaluate on samples where the prediction is above, below, or between values
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#81 - Rerun the baseline model performance to validate the metrics implementations
Issue -
State: closed - Opened by FGRCL over 1 year ago
#80 - Find a way to handle the config explosion of preprocessing and datasets
Issue -
State: closed - Opened by FGRCL over 1 year ago
#79 - rename the baseline model to Tazarv
Issue -
State: closed - Opened by FGRCL over 1 year ago
#78 - Rename the SavedDatasetLoader
Issue -
State: closed - Opened by FGRCL over 1 year ago
#77 - Update some dataset configs
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#76 - Fix: Change the dataset targets in the configs
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#75 - Reorganize scripts in the data package
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#74 - Fix some bugs with the metrics calculations and add some unit tests
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#74 - Fix some bugs with the metrics calculations and add some unit tests
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#73 - debug total mean absolute error
Issue -
State: closed - Opened by FGRCL over 1 year ago
#72 - add and RNN MLP model
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#71 - set the best optimization hyperparameters as defaults
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#70 - Fix unittests and create a workflow to run them on pushes
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#69 - Use PPG
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#68 - Enable using the PPG signals from the datasets
Issue -
State: closed - Opened by FGRCL over 1 year ago
#67 - set the optimal parameters for the resnet model as defaults in the configs
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#66 - Find the best optimization parameters
Issue -
State: closed - Opened by FGRCL over 1 year ago
#65 - Add slurm array job ids to the config
Issue -
State: closed - Opened by FGRCL over 1 year ago
#64 - add the slurm job and task array IDs for log tracking
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#63 - Total loss
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#62 - Add a total absolute error metric
Issue -
State: closed - Opened by FGRCL over 1 year ago
#61 - Add an option to run evaluation metricso on the test set
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#60 - add an evaluation script for trained models on the test set
Issue -
State: closed - Opened by FGRCL over 1 year ago
#59 - enable 2d convolutions on the ResNet model and change the preprocessi…
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#58 - Heartbeat sequence
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#57 - change the transformer encoder model config to use the optimal parame…
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#56 - add the optimal mlp parameters to the config
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#55 - Resnet sweep
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#54 - Fix wandb cache dir and output logs
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#53 - Fix wandb cache dir not working for sweeps
Issue -
State: closed - Opened by FGRCL over 1 year ago
#52 - Arrange the signals into a 2d matrix of timesteps
Issue -
State: closed - Opened by FGRCL over 1 year ago
#51 - decrease the training time
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#50 - Refactor the data package
Issue -
State: closed - Opened by FGRCL over 1 year ago
#49 - Compute canada sweeps
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#48 - Transformer encoder
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#47 - Research an appropriate Transformer Model
Issue -
State: closed - Opened by FGRCL over 1 year ago
#46 - Implement a transfromer encoder to do regular regression
Issue -
State: closed - Opened by FGRCL over 1 year ago
#45 - Save only the best performing model to save space
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#44 - Clean Wandb artifacts and only keep the best ones
Issue -
State: closed - Opened by FGRCL over 1 year ago
#43 - Run sweeps on compute canada
Issue -
State: closed - Opened by FGRCL over 1 year ago
#42 - Local experiments
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#41 - Implement a simple MLP Model
Issue -
State: closed - Opened by FGRCL over 1 year ago
#40 - Local experiments
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#39 - Model loading
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#38 - Slapnicar model
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#37 - Enable model loading
Issue -
State: closed - Opened by FGRCL over 1 year ago
#36 - Reproduce Slapnicar Model
Issue -
State: closed - Opened by FGRCL over 1 year ago
#34 - Shuffle split
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#33 - Sumsampling
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#32 - Change GPU script to match the regular train script
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#31 - Fix the training script to work with Hydra
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#30 - Early stopping
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#29 - Hydra config wandb logging
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#28 - Fix Wandb Online runs
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#27 - Record the SBP and DBP metrics separately
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#26 - Hyperparameter config
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#25 - Heartbeat preprocessing
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#24 - Hydra
Pull Request -
State: closed - Opened by FGRCL over 1 year ago
#23 - Add the UCI dataset
Pull Request -
State: closed - Opened by FGRCL almost 2 years ago
#22 - remove direct keras imports to the tensorflow version
Pull Request -
State: closed - Opened by FGRCL almost 2 years ago
#21 - refactor dataset loader to consistency and update wandb callbacks to work use the new callbacks
Pull Request -
State: closed - Opened by FGRCL almost 2 years ago
#20 - Add a deeper resnet-like model
Pull Request -
State: closed - Opened by FGRCL almost 2 years ago