Ecosyste.ms: Issues

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GitHub / fgcz/rawrr issues and pull requests

#73 - readChromatogram not working in xic mode (Windows 11)

Issue - State: open - Opened by Heriette about 1 month ago

#72 - auc.rawrrChromatogram question

Issue - State: open - Opened by flolai 6 months ago

#71 - rawrr::buildRawrrExe() fails

Issue - State: open - Opened by SamThilmany 8 months ago - 6 comments

#70 - speed up readIndex/readSpectrum by base::textConnection

Issue - State: closed - Opened by asepsiswu 11 months ago - 14 comments
Labels: enhancement

#69 - profile mode in readSpectrum

Issue - State: closed - Opened by asepsiswu 11 months ago - 11 comments

#68 - Request for auc.rawrrChromatogram

Issue - State: open - Opened by rolivella 11 months ago - 3 comments

#66 - Switch to RawFileReader 5.0.93

Issue - State: closed - Opened by cpanse 11 months ago - 2 comments
Labels: enhancement

#64 - Add a check if `input` file exists and is not empty

Issue - State: closed - Opened by cpanse about 1 year ago
Labels: enhancement

#63 - Problem executing readChromatogram inside Singularity container

Issue - State: closed - Opened by toniher about 1 year ago - 5 comments
Labels: bug

#61 - validate_rawrrSpectrum 'StartTime'

Issue - State: closed - Opened by mblanzillotti over 1 year ago - 4 comments
Labels: help wanted

#60 - unit should be minute / auc computation in seconds

Issue - State: closed - Opened by cpanse over 1 year ago - 24 comments
Labels: bug

#59 - Read_Spectrum - Sum Spectra

Issue - State: open - Opened by BerndMaier over 1 year ago
Labels: enhancement

#58 - Use @inheritParams v1.7.9

Pull Request - State: closed - Opened by cpanse over 1 year ago

#57 - Devel

Pull Request - State: closed - Opened by cpanse over 1 year ago

#56 - Read noise value for profile mode mass spectra

Issue - State: closed - Opened by Taoq888 about 2 years ago - 4 comments

#55 - Report when value in returned scan for a trailer is not a number.

Pull Request - State: closed - Opened by martinkunc about 2 years ago - 6 comments
Labels: enhancement

#54 - Error in Example: Length of "x" and "y" are not matching

Issue - State: closed - Opened by DRiXD about 2 years ago - 3 comments
Labels: help wanted

#53 - Spectrum scan centroid mZ, intensity and noises values do not match

Issue - State: closed - Opened by JorgeVindelAlfageme over 2 years ago - 2 comments

#52 - Peak charges for MS1 spectras

Issue - State: closed - Opened by lucaraess over 2 years ago - 4 comments

#51 - Enhancement - Complete readIndex() function

Issue - State: closed - Opened by videlc over 2 years ago - 9 comments

#50 - Get information on gradient

Issue - State: closed - Opened by YasinEl over 2 years ago - 1 comment

#49 - Loading .raw value seperation

Issue - State: closed - Opened by TirsaT over 2 years ago

#48 - Expanded readIndex table

Issue - State: closed - Opened by SelbachLab over 2 years ago - 24 comments
Labels: enhancement

#47 - Issue with readChromatogram when type = "xic"

Issue - State: closed - Opened by Arthfael over 2 years ago - 14 comments

#46 - How to access S/N values

Issue - State: open - Opened by papanlipotype over 2 years ago - 7 comments
Labels: enhancement

#45 - RAW file still being acquired

Issue - State: closed - Opened by martijnmolenaar almost 3 years ago - 1 comment
Labels: question

#44 - invoking managed code by using libmono-2

Issue - State: open - Opened by cpanse almost 3 years ago
Labels: good first issue

#43 - Low performance when reading a lot of spectra

Issue - State: closed - Opened by romanzenka almost 3 years ago - 17 comments
Labels: enhancement

#42 - Extracted Ion Chromatogram

Issue - State: closed - Opened by doexor almost 3 years ago - 4 comments

#41 - Error if too many scans are selected

Issue - State: closed - Opened by rokaempf about 3 years ago - 10 comments

#40 - parse system2 stdout for error message

Issue - State: closed - Opened by cpanse over 3 years ago

#39 - Bioc3.13

Pull Request - State: closed - Opened by cpanse over 3 years ago

#38 - install test cases

Issue - State: closed - Opened by cpanse over 3 years ago

#37 - noise values for a raw file collected in reduced profile mode

Issue - State: closed - Opened by cpanse over 3 years ago - 37 comments
Labels: enhancement

#36 - propose package install for Linux

Issue - State: closed - Opened by cpanse over 3 years ago - 1 comment

#35 - summary method for rawrrChromatogram

Issue - State: open - Opened by cpanse over 3 years ago
Labels: enhancement

#34 - ReadChromatogram intensity or area under the curve

Issue - State: closed - Opened by Linda24bc over 3 years ago - 16 comments
Labels: question

#33 - How do we solve the license issue with vendor libraries?

Issue - State: closed - Opened by cpanse over 3 years ago - 1 comment
Labels: help wanted

#32 - Noise value for individual mass peaks

Issue - State: closed - Opened by YasinEl over 3 years ago - 2 comments
Labels: question

#31 - Titles in .plotChromatogramAndFit?

Issue - State: closed - Opened by svalvaro over 3 years ago - 2 comments
Labels: question

#30 - print the stickers

Issue - State: closed - Opened by cpanse over 3 years ago - 1 comment
Labels: help wanted

#29 - Usage of `@importFrom`

Issue - State: closed - Opened by tobiasko almost 4 years ago - 4 comments
Labels: invalid

#28 - replace purrr::map_df by a base R function

Issue - State: closed - Opened by cpanse almost 4 years ago - 4 comments

#27 - citation()

Issue - State: closed - Opened by tobiasko almost 4 years ago - 2 comments

#26 - display sublicense at startup of interactive R session

Issue - State: closed - Opened by tobiasko almost 4 years ago - 4 comments

#25 - Msbuild

Pull Request - State: closed - Opened by cpanse almost 4 years ago

#24 - consider to build rawrr assemblies through using msbuild

Issue - State: closed - Opened by cpanse almost 4 years ago - 1 comment
Labels: enhancement

#23 - rename package name rawrr

Pull Request - State: closed - Opened by cpanse almost 4 years ago - 1 comment

#22 - the function “sample()” should be rename

Issue - State: closed - Opened by wangjiaxuan666 almost 4 years ago - 3 comments

#21 - Missing Data readSpectrum(...)

Issue - State: closed - Opened by rokaempf almost 4 years ago - 4 comments

#20 - package structure

Issue - State: closed - Opened by tobiasko almost 4 years ago - 1 comment

#19 - rawR function that checks for required .NET framework

Issue - State: open - Opened by tobiasko almost 4 years ago
Labels: enhancement

#18 - readChromatogram

Issue - State: closed - Opened by KarambolageNed almost 4 years ago - 8 comments

#17 - CI / GitHub actions

Issue - State: closed - Opened by tobiasko almost 4 years ago - 4 comments
Labels: question

#16 - readChromatogram does not return 0 values

Issue - State: closed - Opened by TaraBartolec almost 4 years ago - 10 comments
Labels: enhancement

#15 - package naming

Issue - State: closed - Opened by cpanse almost 4 years ago - 12 comments
Labels: help wanted

#14 - Installation fails

Issue - State: closed - Opened by Adafede almost 4 years ago - 5 comments

#12 - generate function that transforms centroided spectrum into sparse matrix

Issue - State: closed - Opened by tobiasko almost 4 years ago - 3 comments
Labels: enhancement

#11 - Functional test using raw files (autoQC01) from different LC-MS systems @FGCZ

Issue - State: closed - Opened by cpanse almost 4 years ago - 5 comments
Labels: enhancement

#10 - merge scan index and file header into a single `rawRindex` object?

Issue - State: closed - Opened by tobiasko almost 4 years ago - 1 comment
Labels: enhancement

#9 - make generic plot function for rawRchromatogram objects

Issue - State: closed - Opened by tobiasko almost 4 years ago - 1 comment

#8 - make generic plotting function for spectrum objects

Issue - State: closed - Opened by tobiasko about 4 years ago - 5 comments
Labels: help wanted

#7 - check during package startup if mono is in path `zzz.R`

Issue - State: closed - Opened by cpanse about 4 years ago - 4 comments
Labels: good first issue

#6 - manuscript preparation

Issue - State: closed - Opened by tobiasko about 4 years ago - 2 comments
Labels: documentation

#5 - include query functions for ProteomicsDB / Prosit

Issue - State: closed - Opened by tobiasko about 4 years ago - 2 comments
Labels: enhancement

#4 - readDetectorList(...) and details

Issue - State: open - Opened by tobiasko about 4 years ago - 3 comments
Labels: help wanted

#3 - readFileHeader(...)

Issue - State: closed - Opened by tobiasko about 4 years ago - 4 comments

#2 - readSpectrum(...)

Issue - State: open - Opened by tobiasko about 4 years ago - 16 comments
Labels: enhancement

#1 - readChromatogram(...)

Issue - State: closed - Opened by cpanse about 4 years ago - 5 comments