Ecosyste.ms: Issues

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GitHub / fenderglass/Flye issues and pull requests

#525 - Could you help find the simple bubble and supper bubble code?

Issue - State: closed - Opened by StickHu about 2 years ago - 1 comment
Labels: question

#524 - Why does higher coverage bring more fragments in assembly?

Issue - State: closed - Opened by winter709 about 2 years ago - 1 comment
Labels: question

#523 - If there is a way I can know which raw reads go to a specific contig?

Issue - State: closed - Opened by WenyuLiang about 2 years ago - 1 comment
Labels: question

#522 - How to utilize more available RAM?

Issue - State: closed - Opened by matteo1313 over 2 years ago - 1 comment

#521 - Batch job failing

Issue - State: closed - Opened by jacolmen over 2 years ago - 6 comments
Labels: question

#516 - How to solve the problem about the high memory minimap2

Issue - State: closed - Opened by zhangwenda0518 over 2 years ago - 8 comments
Labels: question

#509 - Flye assembly produces differentiating output on the same files.

Issue - State: closed - Opened by KasperThystrup over 2 years ago - 12 comments
Labels: enhancement, question

#501 - minimap2 stage crashes

Issue - State: closed - Opened by twolfe over 2 years ago - 19 comments
Labels: interrupted run

#500 - Incorrect haplotype polishing?

Issue - State: closed - Opened by GuillaumeHolley over 2 years ago - 2 comments
Labels: question

#476 - error?

Issue - State: closed - Opened by sekhwal over 2 years ago - 2 comments

#470 - Smaller contigs than input reads in assembly

Issue - State: closed - Opened by AGmccoy almost 3 years ago - 5 comments
Labels: question

#451 - conda installer

Issue - State: open - Opened by mr249 almost 3 years ago - 14 comments
Labels: question, discussion

#377 - supply an external list of k-mers

Issue - State: closed - Opened by dcopetti over 3 years ago - 7 comments
Labels: enhancement

#327 - Polishing Stage stuck at "Separating alignment into bubbles" step

Issue - State: closed - Opened by lautimothy almost 4 years ago - 4 comments
Labels: interrupted run, more info needed

#321 - processing multiple fastq files

Issue - State: closed - Opened by ponomarevsy almost 4 years ago - 2 comments
Labels: question

#275 - lh3/minimap2 please adopt your --secondary-seq patch

Issue - State: closed - Opened by smoe over 4 years ago - 6 comments
Labels: enhancement

#271 - fastq error

Issue - State: closed - Opened by biowackysci over 4 years ago - 4 comments
Labels: question

#245 - ERROR: Command '['flye-modules', 'repeat', '--disjointigs',

Issue - State: closed - Opened by bioramg over 4 years ago - 9 comments

#244 - Ability to specific a random seed for reproduction of assemblies

Issue - State: closed - Opened by maxgmarin over 4 years ago - 4 comments
Labels: enhancement, question

#131 - Question about circular sequence output

Issue - State: closed - Opened by russellj7 over 5 years ago - 3 comments

#128 - Flye does not generate any output ("No disjointigs were assembled" message)

Issue - State: open - Opened by StefanoLonardi over 5 years ago - 88 comments
Labels: question, discussion

#100 - Does Flye trim adaptors?

Issue - State: closed - Opened by vviala over 5 years ago - 8 comments