Ecosyste.ms: Issues

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GitHub / federicomarini/quantiseqr issues and pull requests

#24 - Reduce runtimes

Issue - State: open - Opened by komalsrathi 4 months ago - 3 comments

#23 - Manually curated signatures

Issue - State: closed - Opened by france-hub over 1 year ago - 5 comments

#22 - Quantiseq fails with "duplicate 'row names are not allowed'

Issue - State: open - Opened by Christian-Heyer almost 2 years ago - 2 comments

#21 - Fixing immunedeconv difference V2

Pull Request - State: closed - Opened by czackl over 2 years ago - 3 comments

#20 - Fixing quantiseqr immunedeconv difference

Pull Request - State: closed - Opened by czackl over 2 years ago - 5 comments

#19 - Biocreview

Pull Request - State: closed - Opened by FFinotello over 3 years ago

#18 - Ehub song

Pull Request - State: closed - Opened by federicomarini over 3 years ago

#17 - Create .gitattributes

Pull Request - State: closed - Opened by grst over 3 years ago - 1 comment

#16 - Fixed a few TODOs

Pull Request - State: closed - Opened by FFinotello over 3 years ago - 4 comments

#15 - Some TODOs fixed

Pull Request - State: closed - Opened by federicomarini over 3 years ago - 1 comment

#14 - Moretests

Pull Request - State: closed - Opened by federicomarini over 3 years ago

#13 - Paramchecks - a large bulk of commits for grooming up the package

Pull Request - State: closed - Opened by federicomarini over 3 years ago

#12 - Unit testing suite

Issue - State: closed - Opened by federicomarini over 3 years ago

#11 - Limit analysis to genes available in TCGA data

Issue - State: open - Opened by FFinotello almost 4 years ago

#10 - Parallelize when possible?

Issue - State: open - Opened by federicomarini almost 4 years ago - 3 comments

#9 - Handling datasets with IDs different from gene symbols

Issue - State: closed - Opened by federicomarini almost 4 years ago - 2 comments

#8 - Runnable examples for all functions that are exported

Issue - State: closed - Opened by federicomarini almost 4 years ago - 1 comment

#7 - Clarify license

Issue - State: closed - Opened by federicomarini almost 4 years ago

#6 - Select appropriate dataset for examples and vignette as well

Issue - State: open - Opened by federicomarini almost 4 years ago - 3 comments

#5 - Define interface to a SummarizedExperiment-like object

Issue - State: closed - Opened by federicomarini almost 4 years ago - 2 comments

#4 - Proper amount and scope for parameter checks

Issue - State: closed - Opened by federicomarini almost 4 years ago - 1 comment

#3 - Clean quantiseqr.R from unnecessary code

Issue - State: closed - Opened by FFinotello almost 4 years ago - 2 comments

#2 - Allow user-provided signatures?

Issue - State: open - Opened by FFinotello almost 4 years ago

#1 - Fix the handling of the "rmgenes" parameter

Issue - State: closed - Opened by FFinotello almost 4 years ago - 1 comment