Ecosyste.ms: Issues

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GitHub / federicomarini/genetonic issues and pull requests

#60 - Mosdefied genetonic

Pull Request - State: closed - Opened by federicomarini 2 months ago

#59 - replacing all instances of aes_string with aes

Pull Request - State: closed - Opened by federicomarini 9 months ago

#58 - New igraph changes - brought in for GeneTonic

Pull Request - State: closed - Opened by federicomarini 9 months ago

#57 - Associate annotation information - bg_ids NULL

Issue - State: open - Opened by Macdot3 10 months ago - 2 comments

#56 - "get_aggrscores" function produces "NAs"

Issue - State: open - Opened by anitalakatos about 1 year ago - 2 comments

#55 - force keeping the data frame structure to enable colMeans to keep on …

Pull Request - State: closed - Opened by federicomarini about 1 year ago - 1 comment

#54 - Genetonic unable to install

Issue - State: open - Opened by fishmatt over 1 year ago - 4 comments

#53 - Subset summary heatmap

Issue - State: open - Opened by AnnekathrinSilvia over 1 year ago - 1 comment

#52 - Code not shown

Issue - State: open - Opened by AnnekathrinSilvia over 1 year ago - 7 comments

#51 - Disabled Label display in Gene Boxplot

Issue - State: open - Opened by AnnekathrinSilvia over 1 year ago - 3 comments

#50 - Subset gs_heatmap

Issue - State: open - Opened by AnnekathrinSilvia over 1 year ago - 1 comment

#49 - error with gs_scores()

Issue - State: open - Opened by DaniBlumstein over 1 year ago - 7 comments

#48 - Fortified geneplot

Pull Request - State: closed - Opened by federicomarini over 1 year ago - 1 comment

#47 - Ridge genesets

Pull Request - State: closed - Opened by federicomarini almost 2 years ago - 1 comment

#46 - divergent colorBar in DT table centred on 0.5

Issue - State: open - Opened by rb643 about 2 years ago - 1 comment

#45 - Multiple gene lists comparison

Issue - State: open - Opened by gurpreet-bioinfo about 2 years ago - 1 comment

#44 - error installing

Issue - State: closed - Opened by jdmontenegro about 2 years ago - 2 comments

#43 - Better colors

Pull Request - State: closed - Opened by federicomarini about 2 years ago

#42 - Heatmap winsorized

Pull Request - State: closed - Opened by federicomarini about 2 years ago

#41 - gs_horizon

Issue - State: open - Opened by lucius81 about 2 years ago - 3 comments

#40 - export plotly objects as vectorial elements

Issue - State: closed - Opened by lucius81 about 2 years ago - 3 comments

#39 - bg_ids datatype and creation

Issue - State: closed - Opened by DaniBlumstein over 2 years ago - 1 comment

#37 - Making standalone Desktop app from GeneTonic

Issue - State: open - Opened by markdunning over 2 years ago - 5 comments

#36 - update gh actions

Pull Request - State: closed - Opened by federicomarini over 2 years ago

#34 - pandoc-citeproc is not available!

Issue - State: open - Opened by sbbmu over 2 years ago - 3 comments

#33 - fixing example

Pull Request - State: closed - Opened by federicomarini over 2 years ago

#32 - Gsupset

Pull Request - State: closed - Opened by federicomarini over 2 years ago

#29 - error with enrichment_map()

Issue - State: open - Opened by lucolotto almost 3 years ago - 6 comments

#28 - Providing the GeneTonicList (gtl) at runtime

Pull Request - State: closed - Opened by federicomarini almost 3 years ago - 6 comments

#27 - How to best share output with collaborators?

Issue - State: open - Opened by guidohooiveld almost 3 years ago - 1 comment

#26 - GeneTonic with EdgeR

Issue - State: closed - Opened by lucolotto almost 3 years ago - 4 comments

#25 - [Question]: Standing up GeneTonic on a shiny server

Issue - State: closed - Opened by tamuanand about 3 years ago - 2 comments

#24 - Codetrack n tooltip

Pull Request - State: closed - Opened by federicomarini about 3 years ago

#23 - Gsenrich shaker

Pull Request - State: closed - Opened by federicomarini over 3 years ago

#22 - Correctly handling the position of jittered points

Pull Request - State: closed - Opened by federicomarini over 3 years ago - 3 comments

#21 - How to deal with NA data for non model species?

Issue - State: open - Opened by cagenet over 3 years ago - 5 comments

#20 - GeneTonic stopped working after packages update

Issue - State: closed - Opened by acerverat over 3 years ago - 10 comments

#19 - Newbs4dash

Pull Request - State: closed - Opened by federicomarini over 3 years ago - 1 comment

#18 - GeneTonic does not load

Issue - State: closed - Opened by Rafaelsoler13 over 3 years ago - 13 comments

#17 - Heat consistent colors

Pull Request - State: closed - Opened by federicomarini over 3 years ago

#16 - Graphsummary

Pull Request - State: closed - Opened by federicomarini over 3 years ago - 1 comment

#15 - merging master into graphsummary

Pull Request - State: closed - Opened by federicomarini over 3 years ago

#14 - Gsheatmap extraparams

Pull Request - State: closed - Opened by federicomarini over 3 years ago

#13 - column names in gs_heatmap cutoff

Issue - State: closed - Opened by pkreville over 3 years ago - 7 comments

#12 - Gtl create describe

Pull Request - State: closed - Opened by federicomarini over 3 years ago - 1 comment

#11 - Update graphsummary

Pull Request - State: closed - Opened by AnnekathrinSilvia over 3 years ago

#10 - Signature volcano plot

Pull Request - State: closed - Opened by AnnekathrinSilvia over 3 years ago - 1 comment

#9 - Volcano plot

Pull Request - State: closed - Opened by federicomarini over 3 years ago - 3 comments

#8 - Lollipop bar

Pull Request - State: closed - Opened by federicomarini over 3 years ago - 1 comment

#7 - Estoylisto

Pull Request - State: closed - Opened by federicomarini almost 4 years ago - 1 comment

#6 - Distillery

Pull Request - State: closed - Opened by federicomarini over 4 years ago - 1 comment

#5 - Added clustering algorithms + plots

Pull Request - State: closed - Opened by fhaertner over 4 years ago - 1 comment

#4 - Clearing up

Pull Request - State: closed - Opened by federicomarini almost 5 years ago - 1 comment

#3 - Vignette cannot be built

Issue - State: closed - Opened by dktanwar almost 5 years ago - 4 comments

#2 - Exemplary

Pull Request - State: closed - Opened by federicomarini almost 5 years ago

#1 - Preshaking

Pull Request - State: closed - Opened by federicomarini about 5 years ago