Ecosyste.ms: Issues

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GitHub / feat-fear/gattaca_beta issues and pull requests

#23 - `GATTACA run` crashes if the `extra_limma_vars` parameter is set

Issue - State: closed - Opened by MrHedmad almost 3 years ago
Labels: bug

#23 - `GATTACA run` crashes if the `extra_limma_vars` parameter is set

Issue - State: closed - Opened by MrHedmad almost 3 years ago
Labels: bug

#22 - The README and CONTRIBUTING guides and outdated.

Issue - State: closed - Opened by MrHedmad almost 3 years ago

#22 - The README and CONTRIBUTING guides and outdated.

Issue - State: closed - Opened by MrHedmad almost 3 years ago

#21 - Loading bars when saving plots are missing

Issue - State: closed - Opened by MrHedmad almost 3 years ago - 1 comment
Labels: enhancement

#21 - Loading bars when saving plots are missing

Issue - State: closed - Opened by MrHedmad almost 3 years ago - 1 comment
Labels: enhancement

#20 - Several warnings are created and passed onto to the user, but are inevitable.

Issue - State: closed - Opened by MrHedmad almost 3 years ago
Labels: enhancement

#20 - Several warnings are created and passed onto to the user, but are inevitable.

Issue - State: closed - Opened by MrHedmad almost 3 years ago
Labels: enhancement

#19 - `run` does not generate the correct number of volcano plots.

Issue - State: closed - Opened by MrHedmad almost 3 years ago
Labels: bug

#19 - `run` does not generate the correct number of volcano plots.

Issue - State: closed - Opened by MrHedmad almost 3 years ago
Labels: bug

#18 - GATTACA went on a diet

Pull Request - State: closed - Opened by MrHedmad about 3 years ago - 2 comments

#18 - GATTACA went on a diet

Pull Request - State: closed - Opened by MrHedmad about 3 years ago - 2 comments

#17 - affy2expression crashes if `--plot-number` is set to 0

Issue - State: closed - Opened by MrHedmad about 3 years ago - 1 comment

#17 - affy2expression crashes if `--plot-number` is set to 0

Issue - State: closed - Opened by MrHedmad about 3 years ago - 1 comment

#16 - Fixann

Pull Request - State: closed - Opened by Feat-FeAR about 3 years ago - 1 comment

#16 - Fixann

Pull Request - State: closed - Opened by Feat-FeAR about 3 years ago - 1 comment

#15 - `annotate` produces invalid .csv files

Issue - State: closed - Opened by MrHedmad over 3 years ago
Labels: enhancement, good first issue

#15 - `annotate` produces invalid .csv files

Issue - State: closed - Opened by MrHedmad over 3 years ago
Labels: enhancement, good first issue

#14 - MA plots need to be computed even when using `--plot-number`

Issue - State: closed - Opened by MrHedmad over 3 years ago - 1 comment
Labels: enhancement, good first issue

#14 - MA plots need to be computed even when using `--plot-number`

Issue - State: closed - Opened by MrHedmad over 3 years ago - 1 comment
Labels: enhancement, good first issue

#13 - Road to release

Pull Request - State: closed - Opened by MrHedmad over 3 years ago

#13 - Road to release

Pull Request - State: closed - Opened by MrHedmad over 3 years ago

#12 - Expression matrix now features 'Probe_id' as the first column

Pull Request - State: closed - Opened by Feat-FeAR over 3 years ago

#12 - Expression matrix now features 'Probe_id' as the first column

Pull Request - State: closed - Opened by Feat-FeAR over 3 years ago

#11 - Actual comparisons are opposite to those defined by the user

Issue - State: closed - Opened by Feat-FeAR over 3 years ago - 1 comment
Labels: bug

#11 - Actual comparisons are opposite to those defined by the user

Issue - State: closed - Opened by Feat-FeAR over 3 years ago - 1 comment
Labels: bug

#10 - Annotator

Pull Request - State: closed - Opened by MrHedmad over 3 years ago

#10 - Annotator

Pull Request - State: closed - Opened by MrHedmad over 3 years ago

#8 - [affy2expression] Removal of control probes removes all samples.

Issue - State: closed - Opened by MrHedmad over 3 years ago - 2 comments
Labels: bug

#6 - The output files are owned by root

Issue - State: closed - Opened by MrHedmad over 3 years ago - 3 comments
Labels: help wanted

#5 - Merge Repro into Main

Pull Request - State: closed - Opened by MrHedmad over 3 years ago

#4 - [GATTACA] The `dryrun` option is not implemented.

Issue - State: closed - Opened by MrHedmad over 3 years ago - 1 comment
Labels: bug, enhancement

#3 - The scripts might not be platform independent.

Issue - State: closed - Opened by MrHedmad over 3 years ago
Labels: enhancement

#2 - [GATTACA] Cannot use the local databases if run in the docker container.

Issue - State: closed - Opened by MrHedmad over 3 years ago - 1 comment
Labels: bug

#1 - [GATTACA] Using `rankprod` with a large number of samples crashes R with no errors.

Issue - State: closed - Opened by MrHedmad over 3 years ago - 1 comment
Labels: bug