fboehm/qtl2pleio issues and pull requests

#47 - Reword README and vignette sections

Issue - State: open - Opened by fboehm over 3 years ago

#46 - Equation rendering in README contains misplaced asterisks

Issue - State: closed - Opened by fboehm over 3 years ago - 1 comment

#44 - Update README

Issue - State: open - Opened by fboehm about 4 years ago - 2 comments
Labels: enhancement

#43 - CRAN and LTO issue

Issue - State: closed - Opened by fboehm about 4 years ago - 1 comment

#42 - Finish writing vignette for one-QTL scans

Issue - State: open - Opened by fboehm over 4 years ago - 1 comment

#41 - Add tests for perms function

Issue - State: open - Opened by fboehm over 4 years ago

#40 - Fix wording in d-variate, d-QTL scan vignette

Issue - State: open - Opened by fboehm over 4 years ago

#39 - Use C++ to write faster scan functions

Issue - State: open - Opened by fboehm over 4 years ago - 3 comments

#38 - Document C++ functions

Issue - State: open - Opened by fboehm over 4 years ago - 2 comments

#37 - Check computing time for boot_pvl relative to scan_pvl

Issue - State: closed - Opened by fboehm almost 5 years ago - 3 comments

#36 - clean up scan_pvl and boot_pvl code

Issue - State: closed - Opened by fboehm almost 5 years ago - 1 comment
Labels: enhancement

#35 - Fix find_pleio_peak_tib function

Issue - State: closed - Opened by fboehm almost 5 years ago

#34 - fix vignettes

Issue - State: closed - Opened by fboehm almost 5 years ago - 2 comments

#33 - add bayes factor calcs

Issue - State: closed - Opened by fboehm almost 5 years ago - 1 comment

#32 - Add a vignette to explain profile LOD plots

Issue - State: open - Opened by fboehm over 5 years ago

#31 - Explain how I used feedback when I next submit to CRAN

Issue - State: closed - Opened by fboehm over 5 years ago

#30 - Decide which data to include in package

Issue - State: closed - Opened by fboehm over 5 years ago

#29 - fix citations in Recla vignette

Issue - State: open - Opened by fboehm over 5 years ago

#28 - Use base 10 log instead of natural base

Issue - State: closed - Opened by fboehm over 5 years ago - 1 comment

#27 - Installation problem

Issue - State: closed - Opened by HongHe0123 over 5 years ago - 9 comments

#26 - Update README.Rmd

Issue - State: closed - Opened by fboehm over 5 years ago - 1 comment

#25 - update examples and tests after code changes for version 1.1.0

Issue - State: closed - Opened by fboehm over 5 years ago - 1 comment

#24 - tidy_scan_pvl does not deal with more than two traits

Issue - State: closed - Opened by HongHe0123 over 5 years ago - 2 comments
Labels: enhancement

#23 - How to "Create a profile LOD plot to visualize results of two-dimensional scan"?

Issue - State: closed - Opened by HongHe0123 over 5 years ago - 2 comments

#22 - Not able to install the package qtl2peio

Issue - State: closed - Opened by HongHe0123 over 5 years ago - 4 comments

#21 - Use rstudio/pins R package when downloading files

Issue - State: closed - Opened by fboehm over 5 years ago - 1 comment
Labels: enhancement, good first issue

#20 - Fixes to paper.bib

Pull Request - State: closed - Opened by kyleniemeyer over 5 years ago - 1 comment

#19 - Consider moving recla vignette to inst/ directory

Issue - State: closed - Opened by fboehm over 5 years ago - 1 comment

#18 - Need print methods for S3 objects that are intermediate outputs from qtl2 and qtl2pleio

Issue - State: open - Opened by fboehm over 5 years ago - 1 comment
Labels: enhancement

#17 - two small changes

Pull Request - State: closed - Opened by kbroman almost 6 years ago - 1 comment

#16 - README: suppress warnings and messages when loading packages

Issue - State: closed - Opened by fboehm almost 6 years ago - 1 comment

#15 - README: add text to explain every section

Issue - State: closed - Opened by fboehm almost 6 years ago - 1 comment

#14 - Describe results for scan1 outputs

Issue - State: closed - Opened by fboehm almost 6 years ago - 2 comments

#13 - Explain 2d scan in README.Rmd

Issue - State: closed - Opened by fboehm almost 6 years ago - 1 comment

#12 - Changes to ReadMe

Pull Request - State: closed - Opened by kbroman almost 6 years ago - 1 comment

#11 - Fix @details section for scan_pvl()

Issue - State: closed - Opened by fboehm about 6 years ago - 1 comment
Labels: bug, enhancement

#10 - How to extract from addcovar input a matrix with linearly independent columns?

Issue - State: closed - Opened by fboehm over 6 years ago - 2 comments
Labels: bug

#9 - Add option to do two-dimensional scan with interaction covariates (ie, interact with founder allele probs)

Issue - State: open - Opened by fboehm over 6 years ago
Labels: enhancement

#8 - Enable use of multiple cores

Issue - State: closed - Opened by fboehm over 6 years ago - 1 comment
Labels: enhancement

#7 - Add code to check id names across different input objects and use only those subjects present in all objects

Issue - State: closed - Opened by fboehm over 6 years ago - 1 comment

#6 - Need unit tests for proper handling of checking on identical ordering of subject names

Issue - State: closed - Opened by fboehm over 6 years ago - 2 comments

#5 - Need scan function option for haley Knott regression, ie, without genetic random effect

Issue - State: closed - Opened by fboehm over 6 years ago - 1 comment
Labels: enhancement

#4 - Need unit tests for devel branch Cpp functions

Issue - State: closed - Opened by fboehm almost 7 years ago - 1 comment
Labels: enhancement

#3 - calc_lrt is incompatible with new output structure from scan_pvl

Issue - State: closed - Opened by fboehm almost 7 years ago - 1 comment
Labels: bug, good first issue

#2 - tests fail in v 0.1.1

Issue - State: closed - Opened by fboehm almost 7 years ago
Labels: bug, good first issue

#1 - Vignette code fails

Issue - State: closed - Opened by fboehm almost 7 years ago
Labels: bug, good first issue

GitHub / fboehm/qtl2pleio issues and pull requests