Ecosyste.ms: Issues

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GitHub / fastlmm/bed-reader issues and pull requests

#28 - [Bug] in _open_bed.py: File handler not closed

Issue - State: closed - Opened by r1cheu 4 months ago - 1 comment

#27 - when to_bed is called it can change the properties matrix values

Issue - State: closed - Opened by CarlKCarlK 6 months ago - 1 comment

#25 - Stream genotypes to bed file

Issue - State: closed - Opened by FabianGrammes 8 months ago - 10 comments

#24 - Typo in pooch error message

Pull Request - State: closed - Opened by 3ng7n33r 9 months ago - 2 comments

#23 - pip install bed-reader[samples,sparse] zsh: no matches found

Issue - State: closed - Opened by chenghongdeng 9 months ago - 1 comment

#22 - Add ability to read from cloud storage

Issue - State: closed - Opened by hammer 12 months ago - 16 comments
Labels: enhancement

#21 - Add a way to see if the file is SNP-major (the usual) or IID-major

Issue - State: closed - Opened by CarlKCarlK about 1 year ago - 1 comment
Labels: enhancement

#21 - Add a way to see if the file is SNP-major (the usual) or IID-major

Issue - State: open - Opened by CarlKCarlK about 1 year ago
Labels: enhancement

#20 - Remove dependances on Pandas & Pooch

Issue - State: closed - Opened by CarlKCarlK about 1 year ago - 1 comment
Labels: enhancement

#20 - Remove dependances on Pandas & Pooch

Issue - State: closed - Opened by CarlKCarlK about 1 year ago - 1 comment
Labels: enhancement

#19 - dependencies in pyproject.toml should be a dictionary not a list

Issue - State: closed - Opened by CarlKCarlK about 1 year ago - 1 comment

#18 - If possible, move "[build]" out of pyproject.toml

Issue - State: open - Opened by CarlKCarlK about 1 year ago - 1 comment

#18 - If possible, move "[build]" out of pyproject.toml

Issue - State: closed - Opened by CarlKCarlK about 1 year ago - 2 comments

#17 - Sparse Genotype

Issue - State: closed - Opened by quattro over 1 year ago - 10 comments
Labels: enhancement

#15 - Make BedReaderPlus enum smaller

Issue - State: closed - Opened by CarlKCarlK over 1 year ago - 1 comment

#14 - Bed() and Pheno() etc don't like Windows Paths

Issue - State: closed - Opened by CarlKCarlK over 1 year ago - 1 comment

#13 - Build macOS arm64 wheels

Issue - State: closed - Opened by tomwhite over 1 year ago - 3 comments

#12 - Python 3.11 wheels

Issue - State: closed - Opened by tomwhite over 1 year ago - 4 comments

#11 - Python dependencies no longer install with latest Maturin release.

Issue - State: closed - Opened by bradday4 almost 2 years ago - 3 comments

#10 - ValueError: File 'example.fam' is not in the registry.

Issue - State: closed - Opened by bill-95 about 2 years ago - 3 comments

#7 - NFC cleanup of builder invocation

Pull Request - State: closed - Opened by TedDriggs almost 3 years ago

#6 - Add Rust Lint program Clippy to CI process

Issue - State: closed - Opened by CarlKCarlK almost 3 years ago
Labels: enhancement

#5 - Make bed-reader package smaller by excluding \bed_reader\tests\data\

Issue - State: closed - Opened by CarlKCarlK almost 3 years ago - 1 comment
Labels: enhancement

#4 - change np.str to str to avoid warning

Issue - State: closed - Opened by CarlKCarlK about 3 years ago - 1 comment

#3 - unable to install with pip

Issue - State: closed - Opened by remomomo about 4 years ago - 3 comments

#2 - Add support for Python 3.9

Issue - State: closed - Opened by tirkarthi about 4 years ago - 3 comments

#1 - Required packages not in setup.py

Issue - State: closed - Opened by eric-czech about 4 years ago - 2 comments