Ecosyste.ms: Issues

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GitHub / fairtracks/omnipy issues and pull requests

#66 - Implement support for extra validators

Issue - State: open - Opened by github-actions[bot] almost 2 years ago
Labels: todo

#65 - Implement explicit serializer support (if needed)

Issue - State: open - Opened by github-actions[bot] almost 2 years ago
Labels: todo

#64 - add level "objects.engine" ?

Issue - State: open - Opened by github-actions[bot] almost 2 years ago
Labels: todo

#62 - Consider whether omnipy should require Python 3.9 or 3.10 as type-related

Issue - State: closed - Opened by github-actions[bot] almost 2 years ago - 1 comment
Labels: todo

#61 - Add unit tests for MultiModelDataset

Issue - State: open - Opened by github-actions[bot] almost 2 years ago
Labels: todo

#60 - Tests to add:

Issue - State: open - Opened by github-actions[bot] almost 2 years ago
Labels: todo

#59 - Check up: None results are returned as State

Issue - State: open - Opened by github-actions[bot] almost 2 years ago
Labels: todo

#58 - Add assert_signature_and_return_type_func

Issue - State: open - Opened by github-actions[bot] almost 2 years ago
Labels: todo

#57 - Expand on this example with param_key_map and result_key, given these

Issue - State: open - Opened by github-actions[bot] almost 2 years ago
Labels: todo

#56 - Expand on this example with param_key_map and result_key, given these

Issue - State: open - Opened by github-actions[bot] almost 2 years ago
Labels: todo

#55 - Refactor this, and possibly elsewhere in class

Issue - State: open - Opened by github-actions[bot] almost 2 years ago
Labels: todo

#53 - Refactor redundant code

Issue - State: open - Opened by github-actions[bot] almost 2 years ago
Labels: todo

#51 - switch from plural to singular for names of modules in omnipy modules

Issue - State: open - Opened by github-actions[bot] almost 2 years ago
Labels: todo

#50 - Reimplement logic using a state machine, e.g. "transitions" package

Issue - State: open - Opened by github-actions[bot] almost 2 years ago
Labels: todo

#48 - Refactor to remove dependency

Issue - State: open - Opened by github-actions[bot] almost 2 years ago
Labels: todo

#47 - Better handling of kwargs

Issue - State: open - Opened by github-actions[bot] almost 2 years ago
Labels: todo

#46 - Update Dataset.__eq__ similarly, with tests

Issue - State: closed - Opened by github-actions[bot] almost 2 years ago - 1 comment
Labels: good first issue, todo

#44 - change model type to params: Union[Type[Any], Tuple[Type[Any], ...]]

Issue - State: closed - Opened by github-actions[bot] almost 2 years ago
Labels: todo

#43 - Use json serializer package from the pydantic config instead of 'json'

Issue - State: open - Opened by github-actions[bot] almost 2 years ago
Labels: todo

#42 - Update _raise_no_model_exception() text. Model is now a requirement

Issue - State: open - Opened by github-actions[bot] almost 2 years ago - 1 comment
Labels: good first issue, todo

#41 - Add test for get_model_class

Issue - State: closed - Opened by github-actions[bot] almost 2 years ago - 2 comments
Labels: good first issue, todo

#40 - change model type to params: Union[Type[Any], Tuple[Type[Any], ...]]

Issue - State: closed - Opened by github-actions[bot] almost 2 years ago - 2 comments
Labels: todo

#38 - Refactor

Issue - State: closed - Opened by github-actions[bot] almost 2 years ago - 1 comment
Labels: todo

#37 - Refactor using Flow and Task Mixins

Issue - State: open - Opened by github-actions[bot] almost 2 years ago
Labels: todo

#36 - store in runtime, to remove dependencies

Issue - State: closed - Opened by github-actions[bot] almost 2 years ago - 3 comments
Labels: todo

#32 - refactor using state machine

Issue - State: open - Opened by github-actions[bot] almost 2 years ago
Labels: todo

#31 - refactor using state machine

Issue - State: open - Opened by github-actions[bot] almost 2 years ago
Labels: todo

#30 - Recursive replace - *args: Any -> *args: object, *kwargs: Any -> *kwargs: object

Issue - State: closed - Opened by github-actions[bot] almost 2 years ago - 1 comment
Labels: good first issue, todo

#29 - Reimplement typing of flows and task to harmonize with new structure

Issue - State: closed - Opened by github-actions[bot] almost 2 years ago - 1 comment
Labels: todo

#28 - Consider the need for a 'waiting' state

Issue - State: open - Opened by github-actions[bot] almost 2 years ago
Labels: todo

#27 - Add 'failed' state and error management

Issue - State: open - Opened by github-actions[bot] almost 2 years ago
Labels: todo

#26 - Add 'apply' state

Issue - State: open - Opened by github-actions[bot] almost 2 years ago
Labels: todo

#25 - uniprot pandas output is now getting relevant info

Pull Request - State: closed - Opened by jCHENEBY-zz about 2 years ago

#24 - Merging ongoing the prefect/pydantic redesign into main

Pull Request - State: closed - Opened by sveinugu over 2 years ago - 1 comment

#23 - Merging ongoing the prefect/pydantic redesign into main

Pull Request - State: closed - Opened by sveinugu over 2 years ago - 1 comment

#22 - Test PR to check Github actions

Pull Request - State: closed - Opened by sveinugu over 2 years ago

#21 - Refactor uniFAIR to use prefect

Issue - State: closed - Opened by sveinugu almost 3 years ago
Labels: Epic

#20 - New setup for prefect refactoring

Pull Request - State: closed - Opened by joshbaskaran almost 3 years ago

#19 - Add a step between 2 and 3 to remove duplicates in all tables

Issue - State: open - Opened by sveinugu over 3 years ago - 1 comment

#18 - Crawl only when content is updated on remote Rest API

Issue - State: open - Opened by sveinugu over 3 years ago

#17 - Implement checkpoint logic

Issue - State: open - Opened by sveinugu over 3 years ago

#16 - Implement read/write methods

Issue - State: open - Opened by sveinugu over 3 years ago

#15 - Implement checkpoints

Issue - State: open - Opened by sveinugu over 3 years ago
Labels: Epic

#14 - Step 8: Harmonize multimapped attributes for TCGA

Issue - State: open - Opened by sveinugu over 3 years ago

#13 - Step 2: JSON cleanup for TCGA

Issue - State: open - Opened by sveinugu over 3 years ago

#12 - Step 1: Import data from original source for TCGA

Issue - State: open - Opened by sveinugu over 3 years ago

#11 - Detail remaining steps

Issue - State: open - Opened by sveinugu over 3 years ago

#10 - Step 8: Harmonize multimapped attributes for ENCODE

Issue - State: open - Opened by sveinugu over 3 years ago

#8 - Step 6: Create model map

Issue - State: open - Opened by sveinugu over 3 years ago

#7 - Step 5: Satisfy 3NF

Issue - State: open - Opened by sveinugu over 3 years ago

#6 - Step 4: Satisfy 2NF

Issue - State: open - Opened by sveinugu over 3 years ago

#5 - Step 3: Create reference tables to satisfy 1NF

Issue - State: open - Opened by sveinugu over 3 years ago

#4 - Step 2: JSON cleanup for ENCODE

Issue - State: open - Opened by sveinugu over 3 years ago

#3 - Step 1: Import data from original source: from ENCODE API

Issue - State: open - Opened by sveinugu over 3 years ago - 1 comment

#2 - FAIRify TCGA

Issue - State: open - Opened by sveinugu over 3 years ago
Labels: Epic

#1 - FAIRify ENCODE

Issue - State: open - Opened by sveinugu over 3 years ago
Labels: Epic