fabriziocosta/EDeN issues and pull requests

#140 - Minor corrections

Issue - State: open - Opened by cosmina98 over 1 year ago

#139 - No module named eden_chem.io.pubchem

Issue - State: open - Opened by tBai1994 over 2 years ago

#138 - NSPDK descriptors are different for the same objects at different script runs

Issue - State: closed - Opened by aigulkhkmv over 4 years ago - 2 comments

#137 - edge to vertex fix

Pull Request - State: closed - Opened by smautner almost 5 years ago

#136 - assumptions about vertex-ids

Issue - State: closed - Opened by smautner over 5 years ago

#135 - pypi

Pull Request - State: closed - Opened by smautner over 5 years ago

#134 - don't test bin, has been removed

Pull Request - State: closed - Opened by dmaticzka over 6 years ago

#133 - python 3 support & testing

Pull Request - State: closed - Opened by dmaticzka over 6 years ago - 1 comment

#132 - re-establish jupyter notebook tests

Issue - State: open - Opened by dmaticzka over 6 years ago

#131 - Refreshment Course

Pull Request - State: closed - Opened by dmaticzka over 6 years ago

#130 - toolz not found

Issue - State: open - Opened by cgoliver almost 7 years ago

#129 - viennaRNA comment added...

Pull Request - State: closed - Opened by smautner almost 7 years ago - 1 comment

#128 - pip error 'eden/util' does not exist

Issue - State: closed - Opened by cgoliver almost 7 years ago - 2 comments

#127 - morefix

Pull Request - State: closed - Opened by smautner over 7 years ago - 1 comment

#126 - making tests run

Pull Request - State: closed - Opened by smautner over 7 years ago

#125 - install problem

Issue - State: closed - Opened by sperfu over 7 years ago - 2 comments

#124 - Broken setup.py

Issue - State: closed - Opened by mmiladi almost 8 years ago - 1 comment

#123 - Fixtests

Pull Request - State: closed - Opened by dmaticzka almost 8 years ago

#122 - hidden files

Pull Request - State: closed - Opened by fabriziocosta almost 8 years ago

#121 - major restructuring

Pull Request - State: closed - Opened by fabriziocosta almost 8 years ago - 2 comments

#120 - Change in logging message

Pull Request - State: closed - Opened by zaidurrehman about 8 years ago - 1 comment

#119 - Python3 Compatibility

Pull Request - State: closed - Opened by rgerkin about 8 years ago - 6 comments

#118 - testing the traviz

Pull Request - State: closed - Opened by smautner about 8 years ago - 2 comments

#117 - rand_bipartition, print, tests

Pull Request - State: closed - Opened by smautner about 8 years ago

#116 - test

Pull Request - State: closed - Opened by smautner over 8 years ago - 1 comment

#115 - fixed: draw_graph_set does not work with pos argument

Pull Request - State: closed - Opened by smautner over 8 years ago

#114 - removed ipython dep

Pull Request - State: closed - Opened by smautner over 8 years ago

#113 - add graphprot profiles

Pull Request - State: closed - Opened by dmaticzka over 8 years ago

#112 - added rdkit to docker

Pull Request - State: closed - Opened by smautner over 8 years ago - 1 comment

#111 - iterator size improvement

Pull Request - State: closed - Opened by gianlucacorrado over 8 years ago - 1 comment

#110 - iterator_size memory leak fixed

Pull Request - State: closed - Opened by gianlucacorrado over 8 years ago - 2 comments

#109 - added rdkit interface

Pull Request - State: closed - Opened by smautner over 8 years ago - 1 comment

#108 - exception symbol for contraction in eden

Pull Request - State: closed - Opened by smautner over 8 years ago

#107 - amend test results for debugged feature calculations

Pull Request - State: closed - Opened by dmaticzka over 8 years ago

#106 - [WIP] sequence annotate with weights

Pull Request - State: closed - Opened by dmaticzka over 8 years ago

#105 - fix for sequence kernel annotate

Pull Request - State: closed - Opened by dmaticzka over 8 years ago

#104 - vectorizer, moved functions that should be static outside

Pull Request - State: closed - Opened by smautner over 8 years ago - 1 comment

#103 - some static methods in eden/graph

Pull Request - State: closed - Opened by smautner over 8 years ago

#102 - label attribute is not used for layout

Pull Request - State: closed - Opened by smautner over 8 years ago - 1 comment

#101 - viewpoint & k-mer weighted GraphProt

Pull Request - State: closed - Opened by dmaticzka over 8 years ago

#100 - change sequence vectorizer transform for compatibility with AbstractVectorizer

Pull Request - State: closed - Opened by dmaticzka over 8 years ago

#99 - eden/sequence tests and fixes

Pull Request - State: closed - Opened by dmaticzka over 8 years ago

#98 - GraphProt and weights

Pull Request - State: closed - Opened by dmaticzka over 8 years ago

#97 - display

Pull Request - State: closed - Opened by smautner over 8 years ago - 1 comment

#96 - display was expecting "label" to be set

Pull Request - State: closed - Opened by smautner over 8 years ago - 1 comment

#95 - added set_params

Pull Request - State: closed - Opened by gianlucacorrado over 8 years ago

#94 - added set_params

Pull Request - State: closed - Opened by gianlucacorrado over 8 years ago

#93 - added set_parameters to path vectorizer

Pull Request - State: closed - Opened by gianlucacorrado over 8 years ago

#92 - speedup main transform function by switching from dictionary to lists (fixed version)

Pull Request - State: closed - Opened by dmaticzka over 8 years ago - 1 comment

#91 - F:

Pull Request - State: closed - Opened by fabriziocosta over 8 years ago

#90 - fix memleak

Pull Request - State: closed - Opened by dmaticzka over 8 years ago

#89 - remainder handling of compute_intervals, improved

Pull Request - State: closed - Opened by gianlucacorrado over 8 years ago

#88 - F:

Pull Request - State: closed - Opened by fabriziocosta over 8 years ago

#87 - GArDen module should be lowercase to satisfy pep8

Issue - State: closed - Opened by dmaticzka over 8 years ago - 1 comment

#86 - add symmetrical_trapezoidal_reweighting to garden

Pull Request - State: closed - Opened by dmaticzka over 8 years ago

#85 - Dev

Pull Request - State: closed - Opened by fabriziocosta over 8 years ago

#84 - dont want to loose the graph.graph dict when expanding

Pull Request - State: closed - Opened by smautner over 8 years ago

#83 - sync

Pull Request - State: closed - Opened by fabriziocosta over 8 years ago

#82 - Update model_base.py

Pull Request - State: closed - Opened by pkohvaei over 8 years ago

#81 - pep8 graph.py

Pull Request - State: closed - Opened by fabriziocosta over 8 years ago

#80 - plfold update

Pull Request - State: closed - Opened by fabriziocosta over 8 years ago

#79 - BUGFIX! normalization of EDeN with low nbits was incorrect!

Pull Request - State: closed - Opened by fabriziocosta over 8 years ago

#78 - Dev

Pull Request - State: closed - Opened by fabriziocosta over 8 years ago

#77 - Dev

Pull Request - State: closed - Opened by smautner over 8 years ago

#76 - Dev

Pull Request - State: closed - Opened by fabriziocosta over 8 years ago

#75 - delete nonfunctional test ... again

Pull Request - State: closed - Opened by dmaticzka almost 9 years ago

#74 - garden update

Pull Request - State: closed - Opened by fabriziocosta almost 9 years ago

#73 - Dev

Pull Request - State: closed - Opened by fabriziocosta almost 9 years ago

#72 - molecular graphs

Pull Request - State: closed - Opened by fabriziocosta almost 9 years ago

#71 - contract

Pull Request - State: closed - Opened by fabriziocosta almost 9 years ago

#70 - Dev

Pull Request - State: closed - Opened by fabriziocosta almost 9 years ago

#69 - move jupyter installation to docker-edenbase

Pull Request - State: closed - Opened by dmaticzka almost 9 years ago

#68 - cleanup

Pull Request - State: closed - Opened by fabriziocosta almost 9 years ago

#67 - new symmetric_trapezoidal_reweighting function and improved tests

Pull Request - State: closed - Opened by dmaticzka almost 9 years ago - 2 comments

#66 - annotated cycles are now ordered

Pull Request - State: closed - Opened by smautner almost 9 years ago - 2 comments

#65 - fix jupyter setup for running without export

Pull Request - State: closed - Opened by dmaticzka almost 9 years ago

#64 - cycle annotation bug

Pull Request - State: closed - Opened by smautner almost 9 years ago

#63 - get_params for the vectorizer

Issue - State: closed - Opened by pkohvaei almost 9 years ago - 1 comment

#62 - annotators are here

Pull Request - State: closed - Opened by smautner almost 9 years ago - 1 comment

#61 - add Jupyter to docker image

Pull Request - State: closed - Opened by dmaticzka almost 9 years ago - 1 comment

#60 - this moves dependency installation to a prebuilt docker image

Pull Request - State: closed - Opened by dmaticzka almost 9 years ago

#59 - fixing versions RFC

Pull Request - State: closed - Opened by dmaticzka almost 9 years ago - 4 comments

#58 - Add infrastructure to set a seed

Issue - State: closed - Opened by bgruening almost 9 years ago - 1 comment

#57 - initial Graphprot branch integration

Pull Request - State: closed - Opened by dmaticzka almost 9 years ago - 3 comments

#56 - decide on path for EDeN installation

Issue - State: closed - Opened by dmaticzka almost 9 years ago - 2 comments

#55 - rna vectorizer and display changed

Pull Request - State: closed - Opened by smautner almost 9 years ago

#54 - Depend on networkx < 2.0

Pull Request - State: closed - Opened by bgruening almost 9 years ago

#53 - nodes_iter() is not available in networkx 2.0

Issue - State: closed - Opened by zaidurrehman almost 9 years ago - 1 comment

#52 - always use latest miniconda version

Pull Request - State: closed - Opened by dmaticzka about 9 years ago - 4 comments

#51 - drawing can now ignore edges for the layouting

Pull Request - State: closed - Opened by smautner about 9 years ago - 1 comment

#50 - use nose from conda to make tests run again on travis

Pull Request - State: closed - Opened by dmaticzka about 9 years ago - 1 comment

#49 - triangles are added also in annotation but not removed

Issue - State: closed - Opened by fabriziocosta about 9 years ago - 1 comment

#48 - make travis run doctests

Pull Request - State: closed - Opened by dmaticzka about 9 years ago

#47 - add dask integration

Issue - State: closed - Opened by bgruening about 9 years ago - 1 comment
Labels: feature

#46 - enable continuous integration with nose

Pull Request - State: closed - Opened by dmaticzka about 9 years ago - 1 comment

#45 - new encoding + rebase

Pull Request - State: closed - Opened by antworteffekt about 9 years ago

#44 - added the rna structure annotator

Pull Request - State: closed - Opened by smautner over 9 years ago

#32 - Add travis banner

Pull Request - State: closed - Opened by bgruening over 9 years ago

#30 - parametrisation

Issue - State: closed - Opened by fabriziocosta over 9 years ago - 1 comment

#17 - Add probabilistic treatment with calibration

Issue - State: closed - Opened by fabriziocosta over 9 years ago - 1 comment

GitHub / fabriziocosta/EDeN issues and pull requests