Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / experimental-design/bofire issues and pull requests

#330 - Tests for CategoricalInput

Pull Request - State: closed - Opened by jduerholt about 1 year ago

#329 - Tests for base.py

Pull Request - State: closed - Opened by jduerholt about 1 year ago

#328 - Universal constraint sampler

Pull Request - State: closed - Opened by Osburg about 1 year ago - 3 comments

#327 - Refactor test suite for data models

Pull Request - State: closed - Opened by jduerholt about 1 year ago - 2 comments

#326 - Add noise prior

Pull Request - State: closed - Opened by jkeupp about 1 year ago

#324 - implement batch constraint for doe

Pull Request - State: closed - Opened by KappatC about 1 year ago - 8 comments

#323 - Seed handling for Sampling

Pull Request - State: closed - Opened by jduerholt about 1 year ago

#322 - batch constraints for DoE and __call__ for interpointEqualityConstraint

Pull Request - State: closed - Opened by Osburg about 1 year ago - 3 comments

#321 - DoE: Fix bug if fixed_experiments contain columns that are not in domain

Pull Request - State: closed - Opened by dlinzner-bcs about 1 year ago - 4 comments

#320 - DoE: Bug if fixed experiments contain columns not in domain

Issue - State: closed - Opened by dlinzner-bcs about 1 year ago
Labels: bug

#319 - Implement LSR-BO

Issue - State: closed - Opened by jduerholt about 1 year ago - 1 comment
Labels: enhancement

#318 - Add mixed tanimoto gp surrogate

Pull Request - State: closed - Opened by xxEthene about 1 year ago - 21 comments

#317 - Botorch 0.9.5

Pull Request - State: closed - Opened by jduerholt about 1 year ago - 1 comment

#315 - Nomenclature for DoE Strategies

Issue - State: open - Opened by jduerholt about 1 year ago - 1 comment

#314 - Sampling under nonlinear equality constraints

Issue - State: closed - Opened by Osburg about 1 year ago - 4 comments

#313 - Interpoint Constraints

Pull Request - State: closed - Opened by jduerholt about 1 year ago - 6 comments

#311 - experiments and candidates can be None

Pull Request - State: closed - Opened by bertiqwerty over 1 year ago

#310 - Batch constraint for DoE

Issue - State: closed - Opened by KappatC over 1 year ago - 17 comments

#309 - gp output scaler

Pull Request - State: closed - Opened by simonsung06 over 1 year ago - 3 comments

#308 - Add more log ACQFs

Pull Request - State: closed - Opened by jduerholt over 1 year ago

#307 - DOE data model including objective

Issue - State: open - Opened by simonsung06 over 1 year ago - 3 comments

#306 - updated rdkit fragment/descriptor list

Pull Request - State: closed - Opened by simonsung06 over 1 year ago

#305 - add output_scaler to mlp

Pull Request - State: closed - Opened by simonsung06 over 1 year ago - 3 comments

#304 - allow for max_active=#(variables in constraint) in n_choose_k_constraints_as_bounds()

Pull Request - State: closed - Opened by Osburg over 1 year ago - 1 comment

#303 - 286 add surrogate models that can extrapolate (#300)

Pull Request - State: closed - Opened by dlinzner-bcs over 1 year ago

#302 - Iterative branch and bound

Pull Request - State: closed - Opened by dlinzner-bcs over 1 year ago

#300 - 286 add surrogate models that can extrapolate

Pull Request - State: closed - Opened by dlinzner-bcs over 1 year ago - 1 comment

#299 - 286 add surrogate models that can extrapolate

Pull Request - State: closed - Opened by dlinzner-bcs over 1 year ago

#298 - add polynomial kernel

Pull Request - State: closed - Opened by dlinzner-bcs over 1 year ago

#297 - Classification surrogates

Pull Request - State: closed - Opened by gmancino over 1 year ago - 7 comments

#296 - mapping happens outside of runner

Pull Request - State: closed - Opened by bertiqwerty over 1 year ago - 2 comments

#295 - Fix for categorical features that are fixed in fully categorical BO

Pull Request - State: closed - Opened by simonsung06 over 1 year ago

#294 - fix datatype

Pull Request - State: closed - Opened by jduerholt over 1 year ago

#292 - Remove prior and add test

Pull Request - State: closed - Opened by jduerholt over 1 year ago

#291 - Refactor the candidates/experiments validators.

Pull Request - State: closed - Opened by jduerholt over 1 year ago

#290 - Allow for LinearSurrogate in BotorchSurrogates

Pull Request - State: closed - Opened by jduerholt over 1 year ago - 1 comment

#289 - Feature/experiment validation

Pull Request - State: closed - Opened by jduerholt over 1 year ago - 1 comment

#288 - Set default value for bounds in ContinuousInput Feature

Pull Request - State: closed - Opened by jduerholt over 1 year ago - 4 comments

#287 - Implement possibility to run hyperparameter opts in the strategy

Pull Request - State: closed - Opened by jduerholt over 1 year ago - 1 comment

#286 - Add surrogate models that can extrapolate

Issue - State: closed - Opened by dlinzner-bcs over 1 year ago - 6 comments
Labels: enhancement

#285 - Create surrogate for entmoot strategy

Pull Request - State: open - Opened by TobyBoyne over 1 year ago

#284 - Add aggregation modes to trainable surrogate data models

Pull Request - State: closed - Opened by jduerholt over 1 year ago

#282 - Sync the output of surrogate.predict and strategy.predict

Pull Request - State: closed - Opened by jduerholt over 1 year ago

#281 - Fix infeasible cost calculation for categorical inputs

Pull Request - State: closed - Opened by jduerholt over 1 year ago

#280 - UCB lower bound for beta

Pull Request - State: closed - Opened by jduerholt over 1 year ago

#279 - pydantic 2 - migration

Pull Request - State: closed - Opened by bertiqwerty over 1 year ago - 12 comments

#278 - Implement ENTMOOT in Bofire

Pull Request - State: closed - Opened by TobyBoyne over 1 year ago - 28 comments

#277 - Add ENTMOOT API

Issue - State: closed - Opened by TobyBoyne over 1 year ago - 1 comment

#276 - change seed behavior

Pull Request - State: closed - Opened by jduerholt over 1 year ago

#275 - Refactor get acquisition

Pull Request - State: closed - Opened by gmancino over 1 year ago - 2 comments

#274 - Fix SOBO with one constrained objective

Pull Request - State: closed - Opened by jduerholt over 1 year ago - 1 comment

#273 - Fix import of `get_acquisition_function`

Pull Request - State: closed - Opened by jduerholt over 1 year ago

#272 - add aggregate by mean

Pull Request - State: closed - Opened by jduerholt over 1 year ago

#271 - Feature/new acqfs

Pull Request - State: closed - Opened by jduerholt over 1 year ago

#270 - Fragment filter

Pull Request - State: open - Opened by jduerholt over 1 year ago - 3 comments

#269 - add generic benchmarl module

Pull Request - State: closed - Opened by jduerholt over 1 year ago

#268 - Bayesian optimization on molecules test

Pull Request - State: closed - Opened by swagataroy123 over 1 year ago

#267 - Smaller model dumps

Pull Request - State: closed - Opened by jduerholt over 1 year ago

#266 - fix number of experiments condition for zero experiments

Pull Request - State: closed - Opened by jduerholt over 1 year ago

#265 - Make compatible with latest botorch release and main branch

Pull Request - State: closed - Opened by jduerholt over 1 year ago

#264 - Dominik iterative branch and bound

Pull Request - State: closed - Opened by dlinzner-bcs over 1 year ago - 1 comment

#263 - stratified kfold for cv

Pull Request - State: closed - Opened by simonsung06 over 1 year ago

#262 - Added outlier detection tutorial

Pull Request - State: closed - Opened by swagataroy123 over 1 year ago

#261 - Fix for to and from categorical variable encoding

Pull Request - State: closed - Opened by simonsung06 over 1 year ago

#260 - Feature/categorical molecular2

Pull Request - State: closed - Opened by jduerholt over 1 year ago - 1 comment

#259 - Doe categorical second attempt

Pull Request - State: closed - Opened by ufukguenes over 1 year ago - 6 comments

#258 - Revert "Doe categorical"

Pull Request - State: closed - Opened by ufukguenes over 1 year ago - 5 comments

#257 - relaxing error to a warning

Pull Request - State: closed - Opened by ufukguenes over 1 year ago

#256 - fix permutation importance for dataset of len 1

Pull Request - State: closed - Opened by jduerholt over 1 year ago

#255 - Remove test pypi from publish pipeline

Pull Request - State: closed - Opened by jduerholt over 1 year ago

#254 - Feature/fully combinatorical

Pull Request - State: closed - Opened by jduerholt over 1 year ago

#253 - added calibration metric

Pull Request - State: closed - Opened by swagataroy123 over 1 year ago

#252 - fix botorch to 0.8.5

Pull Request - State: closed - Opened by jduerholt over 1 year ago

#251 - doe: catch ConstraintNotFulfilledError

Pull Request - State: closed - Opened by Osburg over 1 year ago

#250 - Feature/bump botorch

Pull Request - State: closed - Opened by jduerholt over 1 year ago - 5 comments

#249 - remove file from notebooks

Pull Request - State: closed - Opened by jduerholt over 1 year ago

#248 - Give information about HSL linear solvers in documentation

Pull Request - State: closed - Opened by Osburg over 1 year ago

#247 - Hotfix/cyipopt

Pull Request - State: closed - Opened by jduerholt over 1 year ago - 1 comment

#246 - Change cyipopt installation

Pull Request - State: closed - Opened by jduerholt over 1 year ago

#245 - Why are unique samples needed when using the PolytopeSampler?

Issue - State: closed - Opened by ufukguenes over 1 year ago - 8 comments

#244 - IPOPT: check for availability of HSL-Coin

Issue - State: closed - Opened by Osburg over 1 year ago - 2 comments

#243 - Doe categorical

Pull Request - State: closed - Opened by ufukguenes over 1 year ago - 12 comments

#241 - Add testing against Botorch devel

Pull Request - State: closed - Opened by jduerholt over 1 year ago

#240 - add random state to hyperfit

Pull Request - State: closed - Opened by jduerholt over 1 year ago - 1 comment

#239 - Hyperparameter Optimization for Trainable Surrogates

Pull Request - State: closed - Opened by jduerholt over 1 year ago - 3 comments

#238 - Fix validator for close to target for pareto opt

Pull Request - State: closed - Opened by jduerholt over 1 year ago

#237 - Pydantic 2

Pull Request - State: closed - Opened by jduerholt over 1 year ago - 1 comment

#236 - DoE Basic Examples Failing

Issue - State: closed - Opened by jduerholt over 1 year ago - 2 comments

#235 - Outlier detection in predictive strategies

Pull Request - State: closed - Opened by swagataroy123 over 1 year ago - 1 comment

#234 - Molecular input

Pull Request - State: closed - Opened by simonsung06 over 1 year ago - 8 comments

#233 - Pydantic 2

Issue - State: closed - Opened by jduerholt over 1 year ago - 1 comment

#232 - Corrected a mistake in outlier_detection detect

Pull Request - State: closed - Opened by swagataroy123 over 1 year ago

#231 - add stepwise

Pull Request - State: closed - Opened by jduerholt over 1 year ago - 2 comments

#230 - Include random_state to allow user-definable KFold

Pull Request - State: closed - Opened by simonsung06 over 1 year ago

#229 - Custom SOBO objectives

Pull Request - State: closed - Opened by simonsung06 over 1 year ago - 2 comments

#228 - Different solutions to equivalent optimization problems

Issue - State: closed - Opened by ufukguenes over 1 year ago - 4 comments