exabiome/gtnet issues and pull requests

#46 - update authorship

Pull Request - State: closed - Opened by ajtritt 9 months ago

#45 - Add JOSS paper and citations

Pull Request - State: closed - Opened by ajtritt 9 months ago - 1 comment

#44 - Skip sequences that are less than minimum sequence length

Pull Request - State: closed - Opened by ajtritt over 1 year ago - 1 comment

#43 - Fix bug when running on GPUs

Pull Request - State: closed - Opened by ajtritt over 1 year ago - 1 comment

#42 - Fix GPU bug

Pull Request - State: closed - Opened by ajtritt over 1 year ago - 1 comment

#41 - Update documentation for bins functionality

Pull Request - State: closed - Opened by ajtritt over 1 year ago - 1 comment

#40 - Add ability to classify bins

Pull Request - State: closed - Opened by ajtritt over 1 year ago - 1 comment

#39 - Add detailed documentation for updating GTNet

Issue - State: open - Opened by ajtritt over 1 year ago

#38 - Clean up docs and requirements

Pull Request - State: closed - Opened by ajtritt over 1 year ago - 1 comment

#37 - Use importlib.resources to get paths

Pull Request - State: closed - Opened by ajtritt over 1 year ago

#36 - Add missing line in license

Pull Request - State: closed - Opened by ajtritt over 1 year ago

#35 - Update documentation and release issues

Pull Request - State: closed - Opened by ajtritt over 1 year ago - 1 comment

#34 - Windows tests are failing

Issue - State: open - Opened by rly over 1 year ago - 1 comment

#33 - Fix minor infrastructure issues

Issue - State: closed - Opened by rly over 1 year ago - 2 comments

#32 - Upload to real PyPI

Pull Request - State: closed - Opened by ajtritt over 1 year ago - 1 comment

#31 - Change how deployment package is tracked so it can be deleted properly

Pull Request - State: closed - Opened by ajtritt over 1 year ago

#30 - Fix Github release workflow

Issue - State: closed - Opened by ajtritt over 1 year ago - 1 comment

#29 - Fix logging statements

Pull Request - State: closed - Opened by ajtritt over 1 year ago

#28 - add PyPI publish workflow

Pull Request - State: closed - Opened by ajtritt over 1 year ago - 1 comment

#27 - Enh/rtd

Pull Request - State: closed - Opened by ajtritt over 1 year ago

#26 - Add classify command

Pull Request - State: closed - Opened by ajtritt over 1 year ago - 1 comment

#25 - Add automatic download of model

Pull Request - State: closed - Opened by ajtritt over 1 year ago - 1 comment

#24 - Add infrastructure: Coverage, Ruff, etc

Pull Request - State: closed - Opened by ajtritt over 1 year ago - 1 comment

#23 - Add Torchscript

Pull Request - State: closed - Opened by ajtritt over 1 year ago

#22 - Output input for Krona

Issue - State: open - Opened by ajtritt about 2 years ago

#21 - Delete Labels Directory

Pull Request - State: closed - Opened by azaidi06 over 2 years ago

#20 - Enh/predict funcs

Pull Request - State: closed - Opened by azaidi06 over 2 years ago

#19 - delete labels directory

Pull Request - State: closed - Opened by azaidi06 over 2 years ago

#18 - removed old data parsing functions.

Pull Request - State: closed - Opened by azaidi06 over 2 years ago

#17 - Add script for downloading model

Pull Request - State: closed - Opened by ajtritt over 2 years ago

#16 - Enh/gpu support

Pull Request - State: closed - Opened by azaidi06 over 2 years ago

#15 - improve labeling

Issue - State: closed - Opened by azaidi06 over 2 years ago

#14 - improve output format

Issue - State: open - Opened by azaidi06 over 2 years ago

#13 - add full model

Issue - State: closed - Opened by azaidi06 over 2 years ago

#12 - Add gpu support

Issue - State: closed - Opened by azaidi06 over 2 years ago - 1 comment

#11 - Enh/ship data

Pull Request - State: closed - Opened by azaidi06 about 3 years ago

#10 - Enh/download command

Pull Request - State: closed - Opened by azaidi06 about 3 years ago

#9 - Enh/output file

Pull Request - State: closed - Opened by azaidi06 about 3 years ago

#8 - Remove model files from repo

Pull Request - State: closed - Opened by ajtritt about 3 years ago

#7 - Clean cli

Pull Request - State: closed - Opened by azaidi06 about 3 years ago

#6 - add archaea species model

Pull Request - State: closed - Opened by ajtritt about 3 years ago

#5 - Add a function to get model path

Pull Request - State: closed - Opened by ajtritt over 3 years ago

#4 - Onnx fwd

Pull Request - State: closed - Opened by azaidi06 over 3 years ago

#3 - Add test for running model

Issue - State: open - Opened by ajtritt over 3 years ago

#2 - Make batch size dynamic

Pull Request - State: closed - Opened by ajtritt over 3 years ago

#1 - Add bacterial genus model

Pull Request - State: closed - Opened by ajtritt over 3 years ago

GitHub / exabiome/gtnet issues and pull requests