eweitz/ideogram issues and pull requests

#384 - Update caches for human pathway interactions and mouse gene structure

Pull Request - State: closed - Opened by eweitz 2 months ago

#383 - Improve configurability for interactive pathways

Pull Request - State: closed - Opened by eweitz 4 months ago

#382 - Custom Genome (json)

Issue - State: open - Opened by sehee59 4 months ago

#381 - Enable static draw for pathways

Pull Request - State: closed - Opened by eweitz 4 months ago

#380 - Show clinical variants on gene models

Pull Request - State: closed - Opened by eweitz 5 months ago

#379 - Adding placement and span options

Pull Request - State: closed - Opened by christianfares 7 months ago - 3 comments

#378 - Add ClinVar cache pipeline for variant health data

Pull Request - State: closed - Opened by eweitz 7 months ago

#377 - Simplify configuration for Gene Leads

Pull Request - State: closed - Opened by eweitz 7 months ago

#376 - Enable searching genes by Ensembl ID

Pull Request - State: closed - Opened by eweitz 8 months ago

#375 - Avoid hiding tooltip on first hover of previous clicked annotation

Pull Request - State: closed - Opened by eweitz 8 months ago

#374 - Show more relevant interacting genes

Pull Request - State: closed - Opened by eweitz 9 months ago

#373 - human-human genome alignment

Issue - State: open - Opened by thedam 11 months ago

#372 - Migrate to GitHub Actions

Pull Request - State: closed - Opened by eweitz 12 months ago

#371 - Add observable event for pathway diagrams

Pull Request - State: closed - Opened by eweitz 12 months ago

#370 - Show pathway diagrams for interacting genes

Pull Request - State: closed - Opened by eweitz 12 months ago

#369 - Help with Uploading a Bed file instead of a URL link

Issue - State: closed - Opened by EWSBDI27 over 1 year ago - 6 comments

#368 - Fix URL code for tissue cache range fetch

Pull Request - State: closed - Opened by eweitz over 1 year ago

#367 - Ensure top max-expressing tissue is shown, robustify curve shift

Pull Request - State: closed - Opened by eweitz over 1 year ago

#366 - Reframe tissue curves on hover, enriching expression comparison

Pull Request - State: closed - Opened by eweitz over 1 year ago

#365 - Show gene expression distribution by tissue

Pull Request - State: closed - Opened by eweitz over 1 year ago

#364 - Enhance gene leads tooltip: plot reference expression by tissue

Pull Request - State: closed - Opened by eweitz over 1 year ago

#363 - Show top expressed tissues by gene

Pull Request - State: closed - Opened by eweitz over 1 year ago

#362 - Show if gene is among top expressed in tissue

Pull Request - State: closed - Opened by eweitz over 1 year ago

#361 - Fix Gene Leads slowness for pig

Pull Request - State: closed - Opened by eweitz almost 2 years ago

#360 - Improve accessibility, fix `annotsInList` parameter

Pull Request - State: closed - Opened by eweitz almost 2 years ago

#359 - Enable interactive legend

Pull Request - State: closed - Opened by eweitz almost 2 years ago

#358 - Improve transcript navigation, close popover on "Escape", etc.

Pull Request - State: closed - Opened by eweitz almost 2 years ago

#357 - Update to Ensembl 110 and GRCm39; refine protein colors

Pull Request - State: closed - Opened by eweitz almost 2 years ago

#356 - Show signal peptides in protein diagrams

Pull Request - State: closed - Opened by eweitz about 2 years ago

#355 - Protein diagrams: show unfeatured regions, enlarge

Pull Request - State: closed - Opened by eweitz about 2 years ago

#354 - Illustrate mouse membrane proteins

Pull Request - State: closed - Opened by eweitz about 2 years ago

#353 - Illustrate membrane proteins

Pull Request - State: closed - Opened by eweitz about 2 years ago

#352 - Clarify sequence features in protein diagrams

Pull Request - State: closed - Opened by eweitz about 2 years ago

#351 - Add mouse RNA and protein diagrams, update human protein diagrams

Pull Request - State: closed - Opened by eweitz about 2 years ago

#350 - Refine paralog neighborhoods

Pull Request - State: closed - Opened by eweitz about 2 years ago

#349 - Refine tooltips for splice toggle and isoform arrows

Pull Request - State: closed - Opened by eweitz about 2 years ago

#348 - Coarsen fruit fly chromosomes to fix cytoband issues

Pull Request - State: closed - Opened by eweitz about 2 years ago

#347 - Missing regions in fly ideogram?

Issue - State: closed - Opened by nmorozovamathbio over 2 years ago - 4 comments

#346 - Adding Poplar assembly

Pull Request - State: closed - Opened by StantonMartin over 2 years ago - 2 comments

#345 - Refine synonym display, handle rare splicing, refine protein colors

Pull Request - State: closed - Opened by eweitz over 2 years ago

#344 - Histogram with tooltip?

Issue - State: open - Opened by jdhayhurst over 2 years ago - 2 comments

#343 - Find gene by synonym

Pull Request - State: closed - Opened by eweitz over 2 years ago

#342 - Delete old service worker caches, economize NPM package

Pull Request - State: closed - Opened by eweitz over 2 years ago

#341 - Annoatation with multiple tracks

Issue - State: open - Opened by cloudyaaron over 2 years ago - 1 comment

#340 - Two annotations layouts combined: overlaid + histogram

Issue - State: open - Opened by thedam over 2 years ago - 2 comments

#339 - where is detailed documentation/wiki?

Issue - State: closed - Opened by thedam over 2 years ago - 1 comment

#338 - rangeSet does not support sex chromosomes

Issue - State: open - Opened by mflevine over 2 years ago - 4 comments
Labels: help wanted

#337 - Fix splice bug when 1st UTR and exon exactly align

Pull Request - State: closed - Opened by eweitz over 2 years ago - 1 comment

#336 - Add minimal example code for gene leads kit

Pull Request - State: closed - Opened by eweitz over 2 years ago - 1 comment

#335 - Colored protein diagrams

Pull Request - State: closed - Opened by eweitz over 2 years ago - 1 comment

#334 - Enable protein diagrams

Pull Request - State: closed - Opened by eweitz over 2 years ago - 1 comment

#333 - Is there a way to zoom in or out ideograms to check overlapped annotations?

Issue - State: open - Opened by Tong-Chen over 2 years ago - 2 comments
Labels: help wanted

#332 - Update Jupyter example to fix deprecations

Pull Request - State: closed - Opened by eweitz over 2 years ago

#331 - Fix rotate-on-click for chromosomes fetched from NCBI

Pull Request - State: closed - Opened by eweitz over 2 years ago - 1 comment

#330 - Chromosome disappears after being clicked for some organisms

Issue - State: closed - Opened by matthewwiese over 2 years ago - 3 comments

#329 - Jupyter Notebook example no longer works

Issue - State: closed - Opened by matthewwiese over 2 years ago - 5 comments

#328 - Fix sparse genes in gene leads

Pull Request - State: closed - Opened by eweitz over 2 years ago

#327 - Fix splice animation for unannotated 5'-UTR in nonsense mediated decay

Pull Request - State: closed - Opened by eweitz over 2 years ago - 1 comment

#326 - Rebrand "Related genes" to "Gene leads", refine example code

Pull Request - State: closed - Opened by eweitz over 2 years ago - 1 comment

#325 - Karyotype file of dual comparison error

Issue - State: closed - Opened by Hannah1746 over 2 years ago - 3 comments

#324 - Add UI to select any alternative transcript

Pull Request - State: closed - Opened by eweitz over 2 years ago - 1 comment

#323 - Refine object constancy, handling of unfound genes, subpart hover text

Pull Request - State: closed - Opened by eweitz over 2 years ago - 1 comment

#322 - Fix CDS size when on same exon as 3'-UTR

Pull Request - State: closed - Opened by eweitz over 2 years ago - 1 comment

#321 - Compress all human gene structures into size of smartphone photo

Pull Request - State: closed - Opened by eweitz over 2 years ago - 1 comment

#320 - Animate splicing gene transcripts

Pull Request - State: closed - Opened by eweitz almost 3 years ago - 1 comment

#319 - 404 (Not Found)

Issue - State: closed - Opened by thedam almost 3 years ago - 1 comment

#318 - Highlight, navigate, and summarize transcript subparts

Pull Request - State: closed - Opened by eweitz almost 3 years ago - 1 comment

#317 - Histogram support for bedgraph format

Issue - State: open - Opened by stephenshank almost 3 years ago - 2 comments

#316 - Support for structural rearrangements

Issue - State: open - Opened by jmur14 almost 3 years ago - 4 comments

#315 - Support gzipped BED files

Issue - State: open - Opened by LuisGFdez almost 3 years ago - 1 comment

#314 - Support T2T human genome

Issue - State: open - Opened by LuisGFdez almost 3 years ago - 2 comments

#313 - Enable splicing gene transcripts

Pull Request - State: closed - Opened by eweitz almost 3 years ago - 1 comment

#312 - Enrich TSV parser, related genes configurability

Pull Request - State: closed - Opened by eweitz almost 3 years ago - 1 comment

#311 - Improve offline handling in related genes kit

Pull Request - State: closed - Opened by eweitz almost 3 years ago - 1 comment

#310 - Display annotation track from a BED file

Issue - State: closed - Opened by LuisGFdez almost 3 years ago - 8 comments

#309 - Show gene structure diagrams in tooltips

Pull Request - State: closed - Opened by eweitz almost 3 years ago - 1 comment

#308 - Fix issue with custom organism cytogenetic band files

Pull Request - State: closed - Opened by NicoNekoru about 3 years ago - 3 comments

#307 - Issue with custom organism bandfiles

Issue - State: closed - Opened by NicoNekoru about 3 years ago

#306 - Is there a limit to the number of keys in the legend?

Issue - State: open - Opened by a-thind about 3 years ago - 2 comments

#305 - API annotations not working on genomes with non "1,2,3" labelled chromosomes

Issue - State: closed - Opened by NicoNekoru about 3 years ago - 1 comment

#304 - How to display only the brandLabels corresponding to the red triangle instead of all brandLabels？And align the label with the triangl

Issue - State: closed - Opened by Hat-boy about 3 years ago