Ecosyste.ms: Issues

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GitHub / evogytis/baltic issues and pull requests

#37 - Add assertions for newick string formats

Pull Request - State: open - Opened by barneypotter24 4 months ago

#36 - How to plot a phylogeny in a different direction

Issue - State: closed - Opened by xieduo7 5 months ago - 1 comment

#35 - Unable to extract assigned color, clade id, and leaf id into tsv/dataframe

Issue - State: closed - Opened by callaband 11 months ago - 1 comment

#33 - Ascending branch sort?

Issue - State: closed - Opened by barneypotter24 over 1 year ago - 4 comments

#32 - Corrected python_requires for installation

Pull Request - State: closed - Opened by gkarthik over 1 year ago

#31 - Merge dev after updates.

Pull Request - State: closed - Opened by evogytis almost 2 years ago

#30 - Tree regex tricky to use

Issue - State: closed - Opened by ViralVerity about 2 years ago - 1 comment

#29 - commonAncestor returns wrong node when MRCA is root of tree

Issue - State: open - Opened by m-a-martin over 2 years ago - 1 comment

#28 - Added option to not sort branches by height and retain original leaf nodes positions

Pull Request - State: closed - Opened by gkarthik over 2 years ago - 1 comment

#27 - Take singleton as a baltic tree object

Issue - State: open - Opened by andersonbrito about 3 years ago

#26 - Unicode Errors

Issue - State: open - Opened by mattheww95 over 3 years ago

#25 - No way of adding text to circular tree.

Issue - State: closed - Opened by staneta over 3 years ago - 2 comments

#24 - Add exports

Issue - State: open - Opened by batson over 3 years ago - 2 comments

#23 - Fix robust counting and regex for string comments

Pull Request - State: closed - Opened by gkarthik about 4 years ago - 1 comment

#22 - TypeError: unsupported operand type(s) for -: 'function' and 'int'

Issue - State: closed - Opened by colejensen about 4 years ago - 2 comments

#21 - AttributeError: 'NoneType' object has no attribute 'traverse_tree'

Issue - State: closed - Opened by colejensen about 4 years ago - 2 comments

#20 - Export back to NextStrain JSON

Issue - State: closed - Opened by MikeWLloyd about 4 years ago - 3 comments

#19 - Big update to baltic.

Pull Request - State: closed - Opened by evogytis about 4 years ago

#18 - loadJSON needs to be updated for the new nextstrain json format

Issue - State: open - Opened by sidneymbell about 4 years ago - 2 comments

#16 - Booleans as values of traits dict incorrectly output to string.

Issue - State: closed - Opened by evogytis over 4 years ago - 1 comment

#15 - Dev

Pull Request - State: closed - Opened by gkarthik over 4 years ago

#14 - Adding extra elements on tree plots

Issue - State: open - Opened by andersonbrito over 4 years ago - 8 comments

#12 - Add magic methods to baltic classes

Issue - State: open - Opened by sidneymbell almost 5 years ago

#11 - Set up continuous integration

Issue - State: open - Opened by sidneymbell almost 5 years ago - 1 comment

#10 - Write basic unit tests

Issue - State: open - Opened by sidneymbell almost 5 years ago

#9 - Add packaging files

Pull Request - State: closed - Opened by sidneymbell almost 5 years ago

#8 - Docs: tidy up README to include (only) the following

Issue - State: open - Opened by sidneymbell almost 5 years ago

#7 - Add contributor guidelines to CONTRIBUTING.md

Issue - State: open - Opened by sidneymbell almost 5 years ago

#6 - Choose a license

Issue - State: closed - Opened by sidneymbell almost 5 years ago

#5 - Add files required for packaging

Issue - State: closed - Opened by sidneymbell almost 5 years ago

#4 - Running error when run austechia.ipynb

Issue - State: closed - Opened by virologist almost 5 years ago - 3 comments

#3 - Pull Seattle baltic upgrades into evogytis

Pull Request - State: closed - Opened by evogytis over 5 years ago

#2 - Merge progress so far on blab branch onto personal repo.

Pull Request - State: closed - Opened by evogytis over 7 years ago

#1 - Include readme

Pull Request - State: closed - Opened by trvrb about 8 years ago - 1 comment