Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / evilkost/miXGENE issues and pull requests
#96 - SNMNMF restriction
Issue -
State: open - Opened by klema almost 9 years ago
#95 - History of Workflow Execution
Issue -
State: open - Opened by strny about 10 years ago
#94 - [exec_token branch] Rewrite do_action and fix save_params-validation routine.
Issue -
State: open - Opened by evilkost over 10 years ago
Labels: bug
#93 - Cannot auto execute scope that contains a non-auto-executable block with unbound input port.
Issue -
State: open - Opened by evilkost over 10 years ago
Labels: bug
#92 - Remove explicit block registration
Issue -
State: closed - Opened by evilkost over 10 years ago
#91 - Rework experiment representation and execution engine
Issue -
State: open - Opened by evilkost over 10 years ago
Labels: enhancement, meta
#90 - Refactor JS code
Issue -
State: open - Opened by evilkost over 10 years ago
Labels: enhancement, meta
#89 - Add 3d to PCA visualization
Issue -
State: open - Opened by evilkost over 10 years ago
#88 - SNMNMF as a (descriptive) module identifier
Issue -
State: open - Opened by klema over 10 years ago
#87 - Visualize table results
Issue -
State: closed - Opened by klema over 10 years ago
#86 - Generalize Goeman global test plugin
Issue -
State: closed - Opened by klema over 10 years ago
- 1 comment
#85 - PCA visualization
Issue -
State: closed - Opened by klema over 10 years ago
- 2 comments
#84 - Articles can be written either in HTML or in markdown
Issue -
State: closed - Opened by holecm over 10 years ago
Labels: enhancement, critical
#83 - Keep order in result containers
Issue -
State: open - Opened by holecm over 10 years ago
Labels: enhancement
#82 - Blocks that construct options dict for wrapped methods, should reset it on save_params
Issue -
State: open - Opened by evilkost over 10 years ago
#81 - Add Mass upload meta block for user defined input.
Issue -
State: open - Opened by evilkost over 10 years ago
#80 - Content of a deleted cell reappears when a new cell is added
Issue -
State: open - Opened by holecm over 10 years ago
Labels: bug
#79 - Add "leave-one-out cross-validation" metablock
Issue -
State: open - Opened by holecm over 10 years ago
#78 - [Custom iterator] add option to remove cell and redefine cells
Issue -
State: open - Opened by holecm over 10 years ago
#77 - Add option to remove dynamic input
Issue -
State: open - Opened by holecm over 10 years ago
#76 - A new "article type" for unpublished texts
Issue -
State: closed - Opened by holecm over 10 years ago
Labels: enhancement
#75 - "indices are out-of-bounds" in cross-validation
Issue -
State: open - Opened by holecm over 10 years ago
Labels: bug, question
#74 - Missing listbox---unable to set "CSV separator symbol" in "Mass upload" meta-block
Issue -
State: closed - Opened by holecm over 10 years ago
Labels: bug
#73 - wokrflow deadlock in UPLOAD_CMPLX
Issue -
State: open - Opened by holecm over 10 years ago
Labels: bug
#72 - Add the "Set-level aggregation" block
Issue -
State: closed - Opened by holecm over 10 years ago
- 1 comment
#71 - Add "Upload gene sets collection" block
Issue -
State: closed - Opened by holecm over 10 years ago
#70 - For user upload add parameter separator and is_samples_in_rows
Issue -
State: open - Opened by evilkost over 10 years ago
#69 - When TableResult with configuration receive ResultContainer with the different structure, block couldn't be rendered.
Issue -
State: open - Opened by evilkost over 10 years ago
Labels: bug
#68 - [html/js] Multi feature block: when selected columns is stored, we should use original columns names
Issue -
State: open - Opened by evilkost over 10 years ago
#67 - Solve problem with in-browser caching of static files
Issue -
State: open - Opened by evilkost over 10 years ago
#66 - [html/js/css] User upload - assign phenotype features: add control to add column to phenotype matrix
Issue -
State: closed - Opened by evilkost over 10 years ago
#65 - Supervisor doesn't stop celery with guarantee. Investigate and repair.
Issue -
State: open - Opened by evilkost over 10 years ago
- 1 comment
Labels: critical
#64 - User upload blocks should have field for csv separator symbol and use it to process uploaded data.
Issue -
State: open - Opened by evilkost over 10 years ago
#63 - Remove bound var from meta-block collector spec when block which provided referenced var is being removed.
Issue -
State: open - Opened by evilkost over 10 years ago
#62 - Store block `bound inputs` outside of block.
Issue -
State: open - Opened by evilkost over 10 years ago
#61 - Hierarchical sub folder structure to store block variables
Issue -
State: open - Opened by evilkost over 10 years ago
#60 - Execution state for each scope.
Issue -
State: open - Opened by holecm over 10 years ago
Labels: critical
#59 - Add second type of articles: Tutorial
Issue -
State: closed - Opened by evilkost over 10 years ago
#58 - Add ordering to blocks actions.
Issue -
State: open - Opened by evilkost over 10 years ago
#57 - [html/js/css] Update for block Multi Feature sub page `select phenotype features`
Issue -
State: closed - Opened by evilkost over 10 years ago
#56 - Improve miXGENE deploy.
Issue -
State: open - Opened by evilkost over 10 years ago
#55 - [Upload block: assign phenotype classed] Save columns visibility into ExpressionSet objects.
Issue -
State: open - Opened by evilkost over 10 years ago
#54 - [Upload block: assign phenotype classed] Modal window for columns visibility configuration.
Issue -
State: closed - Opened by evilkost over 10 years ago
- 1 comment
#53 - Support 1D aggregation result in Table Result visualisation block.
Issue -
State: open - Opened by evilkost over 10 years ago
#52 - Render outliers in boxplot
Issue -
State: closed - Opened by evilkost over 10 years ago
#51 - Arbitrary file uploads, outside of experiments.
Issue -
State: closed - Opened by evilkost over 10 years ago
#50 - Add more specific block annotation
Issue -
State: closed - Opened by evilkost over 10 years ago
#49 - Allow export of predicted and true results as a json file
Issue -
State: closed - Opened by evilkost over 10 years ago
#48 - Create common wrapper for sklearn classifiers.
Issue -
State: closed - Opened by evilkost over 10 years ago
#47 - Add more classifiers
Issue -
State: closed - Opened by evilkost over 10 years ago
#46 - Automate deploy process
Issue -
State: closed - Opened by evilkost over 10 years ago
- 1 comment
Labels: enhancement
#45 - Improve graphviz generation: meta blocks should have distinct inner outputs with proper name and differing name.
Issue -
State: open - Opened by evilkost over 10 years ago
Labels: enhancement
#44 - Add feature selection block.
Issue -
State: closed - Opened by evilkost over 10 years ago
- 1 comment
#43 - Integrate R ranking methods (add 3 new blocks)
Issue -
State: closed - Opened by evilkost over 10 years ago
#42 - Classifiers shouldn't compute performance scores, instead we should compute them in visualisation blocks on-the-fly.
Issue -
State: closed - Opened by evilkost over 10 years ago
#41 - Mask dynamic inputs names in Custom Iterator block for user convenience.
Issue -
State: open - Opened by evilkost over 10 years ago
#40 - Add ordering for input variables in block.
Issue -
State: closed - Opened by evilkost over 10 years ago
#39 - Export tables from RenderTable block as csv
Issue -
State: closed - Opened by evilkost over 10 years ago
#38 - Add block to select features from expression set based on ResultTable and cut-value or top #.
Issue -
State: closed - Opened by evilkost over 10 years ago
#37 - Estimate and render meta blocks (and entire experiment) progress.
Issue -
State: open - Opened by evilkost over 10 years ago
#36 - Replace simple select input for input ports bindings with more user friendly dialogue window.
Issue -
State: closed - Opened by evilkost over 10 years ago
#35 - Add mechanism to remove blocks.
Issue -
State: closed - Opened by evilkost over 10 years ago
- 2 comments
Labels: critical
#34 - Make possible to erase uploaded data.
Issue -
State: closed - Opened by evilkost over 10 years ago
#33 - Mass upload block.
Issue -
State: closed - Opened by evilkost over 10 years ago
#32 - Create generic celery wrapper
Issue -
State: closed - Opened by evilkost over 10 years ago
#31 - Internal ports in meta-blocks must be created dynamically by user.
Issue -
State: closed - Opened by evilkost over 10 years ago
Labels: enhancement
#30 - Refactor block class: Input ports and parameters should be defined declaratively.
Issue -
State: closed - Opened by evilkost over 10 years ago
#29 - Make possible to register block reaction on certain event, so it can transfer control to an other blocks.
Issue -
State: closed - Opened by evilkost almost 11 years ago
#28 - Add task to generate folds for cross validation
Issue -
State: closed - Opened by evilkost almost 11 years ago
#27 - Rewrite sample assign class widget with angular
Issue -
State: closed - Opened by evilkost almost 11 years ago
#26 - Create custom finite state machine module
Issue -
State: closed - Opened by evilkost almost 11 years ago
#25 - Add gene sets block data provider
Issue -
State: closed - Opened by evilkost almost 11 years ago
Labels: enhancement
#24 - Worklfow action: can't use more than one ParAction in one workflow
Issue -
State: closed - Opened by evilkost almost 11 years ago
Labels: bug, wontfix
#23 - Unite modules vars.py, results.py and GMT from parser.py
Issue -
State: closed - Opened by evilkost almost 11 years ago
#22 - Show number of samples for each class at sample_classify.html widget
Issue -
State: closed - Opened by evilkost almost 11 years ago
Labels: enhancement
#21 - Workflow monitoring
Issue -
State: open - Opened by evilkost almost 11 years ago
#20 - If some final action failed during experiment, show other results anyway.
Issue -
State: closed - Opened by evilkost almost 11 years ago
Labels: bug, wontfix
#19 - Unified page for input parameters and show results
Issue -
State: closed - Opened by evilkost almost 11 years ago
Labels: wontfix
#18 - Order inputs on configuration page
Issue -
State: closed - Opened by evilkost almost 11 years ago
Labels: wontfix
#17 - Fetch same file only once.
Issue -
State: closed - Opened by evilkost almost 11 years ago
- 1 comment
#16 - Control to choose classification targets
Issue -
State: closed - Opened by evilkost almost 11 years ago
- 1 comment
Labels: enhancement
#15 - biopython GEO soft parser fail on some datasets
Issue -
State: open - Opened by evilkost about 11 years ago
#14 - Refactor experiment->ctx dict to Class
Issue -
State: closed - Opened by evilkost about 11 years ago
Labels: wontfix
#13 - Migrate to bootstrap 3.0
Issue -
State: closed - Opened by evilkost about 11 years ago
#12 - Add logging into project
Issue -
State: closed - Opened by evilkost about 11 years ago
#11 - Rename workflow task to action, to avoid confusion with celery tasks
Issue -
State: closed - Opened by evilkost about 11 years ago
#10 - Add dummy control to create experiment and display workflow progress
Issue -
State: closed - Opened by evilkost about 11 years ago
#9 - Add parallel task execution to workflow
Issue -
State: closed - Opened by evilkost over 11 years ago
#8 - Create infrastructure in django application for real workflows
Issue -
State: closed - Opened by evilkost over 11 years ago
- 1 comment
#7 - Create atomic task which call sample classifier algorithm written in R lang.
Issue -
State: closed - Opened by evilkost over 11 years ago
#6 - Create atomic task to read gene expression matrix from local file
Issue -
State: closed - Opened by evilkost over 11 years ago
- 1 comment
#5 - Decide how to store data between steps in workflow
Issue -
State: closed - Opened by evilkost over 11 years ago
- 1 comment
#4 - Workflow executer
Issue -
State: closed - Opened by evilkost over 11 years ago
#3 - Dummy workflow instance
Issue -
State: closed - Opened by evilkost over 11 years ago
#2 - Setup Celery
Issue -
State: closed - Opened by evilkost over 11 years ago
- 1 comment
#1 - Django devserver setup
Issue -
State: closed - Opened by evilkost over 11 years ago