Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / etetoolkit/ete issues and pull requests

#757 - tree.pyx: Use absolute imports.

Pull Request - State: closed - Opened by jordibc 3 months ago

#756 - Remove obsolete clustering stuff and nexml

Pull Request - State: closed - Opened by jordibc 3 months ago

#755 - Push ete4 on conda and/or pypi

Issue - State: open - Opened by marieBvr 3 months ago

#754 - NCBI - taxid to names - newick tree

Issue - State: open - Opened by kullrich 4 months ago - 1 comment
Labels: feature request

#753 - Scale Bar Calculation

Issue - State: open - Opened by metehaansever 6 months ago

#752 - AlignLinkFace malfunction in circular tree mode

Issue - State: open - Opened by dengzq1234 6 months ago

#751 - Ete4 #750

Pull Request - State: closed - Opened by dengzq1234 6 months ago - 2 comments

#750 - Allow option to ignore bad taxonomic annotation

Issue - State: open - Opened by dengzq1234 6 months ago
Labels: feature request, ete4

#749 - Lift `sqlite3`'s `check_same_thread` flag to `NCBITaxa.__init__()`

Pull Request - State: closed - Opened by rtviii 6 months ago - 1 comment

#744 - Update ncbiquery.py

Pull Request - State: closed - Opened by mwittep 8 months ago

#743 - [Update ncbiquery.py] fixing typo in NCBI url

Pull Request - State: closed - Opened by hjgwak 8 months ago - 1 comment

#742 - fix get_distance() for topology_only=True

Pull Request - State: open - Opened by lenacoll 10 months ago

#739 - Stable ete4 release

Issue - State: closed - Opened by Zethson 10 months ago - 5 comments

#738 - taxid not found

Issue - State: open - Opened by WJT0925 11 months ago - 1 comment

#737 - tests/test_evol.py: port assertions to python3.12.

Pull Request - State: open - Opened by emollier 11 months ago

#736 - get_common_ancestor() replacement

Issue - State: closed - Opened by MohammadDara 12 months ago - 1 comment

#735 - Issue with downloading Newick tree in ete4

Issue - State: open - Opened by vmikk 12 months ago

#734 - Leaf names visible despite show_leaf_name=False

Issue - State: open - Opened by michaelgruenstaeudl 12 months ago - 1 comment

#733 - Nodes label get duplicated every time show/render are called

Issue - State: closed - Opened by cerlumi 12 months ago - 1 comment

#732 - only take leaves' species attributes as taxid

Pull Request - State: closed - Opened by dengzq1234 about 1 year ago

#731 - update GTDB module and Taxa tutorial

Pull Request - State: closed - Opened by dengzq1234 about 1 year ago - 1 comment

#730 - fix ncbi annotation using other properties

Pull Request - State: closed - Opened by dengzq1234 about 1 year ago - 1 comment

#728 - Show branch length and support by default

Pull Request - State: closed - Opened by dengzq1234 about 1 year ago - 1 comment

#727 - branch length and support dont show on leaf node

Issue - State: closed - Opened by dengzq1234 about 1 year ago - 1 comment

#726 - correct ete4_#725

Pull Request - State: closed - Opened by dengzq1234 about 1 year ago - 1 comment

#725 - Miss exception in loading NoteStyle from treeview in core

Issue - State: closed - Opened by dengzq1234 about 1 year ago

#724 - update Ete4 tutorial drawing for smartview

Pull Request - State: closed - Opened by dengzq1234 about 1 year ago - 2 comments

#723 - node options panel for root doesn't show

Issue - State: closed - Opened by dengzq1234 about 1 year ago - 1 comment

#722 - Ete4 tutorial taxa

Pull Request - State: closed - Opened by dengzq1234 about 1 year ago - 1 comment

#721 - ultrametric malfunctions in code

Issue - State: closed - Opened by dengzq1234 about 1 year ago - 1 comment

#720 - Ete4 gtdb

Pull Request - State: closed - Opened by dengzq1234 about 1 year ago - 2 comments

#719 - naming of `zoom around node`

Issue - State: open - Opened by dengzq1234 about 1 year ago

#717 - ncbiquery fuzzy not working

Issue - State: open - Opened by G-Molano-LA about 1 year ago

#716 - Modify ladderize method to avoid recursion depth error

Pull Request - State: closed - Opened by harryrichman about 1 year ago - 1 comment

#715 - Implement ladderize method to avoid maximum recursion depth error

Issue - State: closed - Opened by harryrichman about 1 year ago - 1 comment

#714 - Add feature in `populate` method to sample from common tree distributions

Pull Request - State: closed - Opened by harryrichman about 1 year ago - 3 comments

#713 - Refactor set outgroup function and update tests

Pull Request - State: closed - Opened by jhcepas about 1 year ago - 2 comments

#712 - Fix broken str.join() in ncbiquery.generate_table()

Pull Request - State: closed - Opened by dorbarker about 1 year ago

#711 - Online docs

Pull Request - State: closed - Opened by jhcepas about 1 year ago

#710 - ete3 pip and requirements.txt

Issue - State: closed - Opened by NicoMaillet about 1 year ago - 1 comment

#709 - html text formatting

Issue - State: open - Opened by haochenz96 about 1 year ago

#707 - Inconsistent results with merged NCBI TaxIDs

Issue - State: open - Opened by lm-jkominek about 1 year ago

#706 - Annotating leaves with NCBI taxonomy

Issue - State: closed - Opened by lm-jkominek about 1 year ago - 1 comment

#703 - Spin 777 Slot | Login Link Alternatif Spin777Slot Online

Issue - State: closed - Opened by kang138bakso about 1 year ago

#702 - Racecondition when downloading color definition files

Issue - State: open - Opened by sirno over 1 year ago

#700 - Remove PyQt5 dependency

Pull Request - State: closed - Opened by sirno over 1 year ago - 4 comments

#699 - Copy over svg colors to smartview module

Pull Request - State: closed - Opened by sirno over 1 year ago - 1 comment

#698 - Do not try to add `treeview.Face` when it is not available

Pull Request - State: closed - Opened by sirno over 1 year ago - 1 comment

#697 - any way to make each layer of the tree equal width?

Issue - State: closed - Opened by tommyfuu over 1 year ago - 3 comments

#696 - Installing ete4 on Apple M1 / Upgrade to PyQt6

Issue - State: closed - Opened by sirno over 1 year ago - 8 comments

#695 - Installing ete_toolchain without conda

Issue - State: open - Opened by sodiumnitrate over 1 year ago

#694 - nsmap error

Issue - State: open - Opened by bombelli over 1 year ago

#693 - PhyloNodes styles not working like TreeNodes

Issue - State: open - Opened by mwodring over 1 year ago

#692 - Resolve #649. Fix bug in populate() method

Pull Request - State: closed - Opened by harryrichman over 1 year ago

#691 - Add method to generate uniform random bifurcating tree

Issue - State: closed - Opened by harryrichman over 1 year ago - 1 comment

#690 - allow adding tooltip to array

Pull Request - State: closed - Opened by dengzq1234 over 1 year ago - 1 comment

#689 - Rerooting branch support value problem

Issue - State: closed - Opened by metehaansever over 1 year ago - 1 comment

#688 - Unable to invert bars in BarChartFace

Issue - State: open - Opened by Tassadaar over 1 year ago

#687 - download legend seperated from the treeview

Pull Request - State: closed - Opened by dengzq1234 over 1 year ago

#686 - Sync with ete3 latest changes and treeview fixes to work in ete4 branch

Pull Request - State: closed - Opened by jhcepas over 1 year ago

#684 - Please provide any working version of ete

Issue - State: closed - Opened by edikedik over 1 year ago - 1 comment

#683 - Text doubling up after add_face

Issue - State: open - Opened by GitMew over 1 year ago - 1 comment

#682 - Creating new configuration blocks fail

Issue - State: open - Opened by Zefeng-Wu over 1 year ago

#680 - set determination for popup_prop_keys

Pull Request - State: closed - Opened by dengzq1234 over 1 year ago - 1 comment

#679 - update new draw array for accepting any color

Pull Request - State: closed - Opened by dengzq1234 over 1 year ago

#678 - Cannot import name `TreeStyle` from `ete3`

Issue - State: open - Opened by kamurani over 1 year ago - 2 comments

#677 - debug gtdbquery and update test_gtdbquery db path

Pull Request - State: closed - Opened by dengzq1234 over 1 year ago - 1 comment

#676 - Ete4 stackface

Pull Request - State: closed - Opened by dengzq1234 over 1 year ago - 1 comment
Labels: feature request

#675 - Ete4 add stroke option

Pull Request - State: closed - Opened by dengzq1234 over 1 year ago

#674 - Ete4 profilingface

Pull Request - State: closed - Opened by dengzq1234 over 1 year ago - 1 comment

#672 - bug report

Pull Request - State: closed - Opened by dengzq1234 over 1 year ago - 1 comment

#671 - Visualize tree full lineage birds example

Issue - State: open - Opened by mmiladi-SN over 1 year ago

#670 - Broken clustalo version in conda

Issue - State: open - Opened by sbliven over 1 year ago

#669 - layoutbarplot branch from ziqi to main

Pull Request - State: closed - Opened by dengzq1234 almost 2 years ago - 1 comment

#668 - ete3.parser.newick.NewickError

Issue - State: closed - Opened by danrans123 almost 2 years ago - 2 comments

#667 - Type error when rendering into SVG

Issue - State: closed - Opened by mlarjim almost 2 years ago - 2 comments

#666 - expected collapse branch to outline instead of traingle

Issue - State: open - Opened by dengzq1234 almost 2 years ago

#665 - Slow rending in circular layout with low collapse

Issue - State: open - Opened by dengzq1234 almost 2 years ago

#664 - Example code fails: Program parameter has been renamed?

Issue - State: open - Opened by cmayer almost 2 years ago

#663 - root label not handled in tree.write()

Issue - State: open - Opened by cmayer almost 2 years ago - 1 comment

#662 - Fix floating numbers in (drawer.render_tree function)

Pull Request - State: closed - Opened by MohdFarag almost 2 years ago - 2 comments

#659 - random collapse of partial internal node

Issue - State: open - Opened by dengzq1234 almost 2 years ago

#657 - ETE3 install on Ubuntu 22.04 via WSL2

Issue - State: closed - Opened by denjixx almost 2 years ago - 2 comments

#656 - M1 MacBook Pro Installation Problem (osx-arm64?)

Issue - State: open - Opened by VeritatemAmo almost 2 years ago - 5 comments

#655 - GTDBTaxa query needs to update with GCA calls in NCBI

Issue - State: closed - Opened by dengzq1234 almost 2 years ago - 1 comment

#653 - Taxquery v2

Pull Request - State: closed - Opened by dengzq1234 almost 2 years ago