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GitHub / etetoolkit/ete issues and pull requests

#786 - SeqFace crashes in long alignment

Issue - State: open - Opened by dengzq1234 2 months ago

#785 - Ete4 create option of rotation for polygon

Pull Request - State: open - Opened by dengzq1234 2 months ago
Labels: enhancement

#784 - name2realname is undefined

Issue - State: open - Opened by carissableker 3 months ago

#783 - Fix issues when installing ete4 on Windows.

Pull Request - State: open - Opened by ArnaudBelcour 3 months ago

#782 - phyloxml support for ete4

Issue - State: open - Opened by alpae 3 months ago

#779 - TreeKO comparison doesn't handle adjacent duplications

Issue - State: open - Opened by blasks 3 months ago - 1 comment

#776 - Bidirectional barplot visualization

Issue - State: open - Opened by dengzq1234 4 months ago
Labels: feature request, ete4

#775 - invalid pyproject.toml config: `project.license`

Issue - State: open - Opened by abdush 4 months ago - 1 comment

#774 - ModuleNotFoundError: ete4.tools.ete_build_lib

Issue - State: open - Opened by xuxocast 5 months ago

#773 - config error

Issue - State: open - Opened by pathogen-detection 5 months ago

#772 - render function error

Issue - State: open - Opened by pathogen-detection 5 months ago

#770 - Use single quotes in database queries

Pull Request - State: closed - Opened by nsoranzo 5 months ago - 5 comments

#767 - Merge from branch adding legends

Pull Request - State: closed - Opened by jordibc 6 months ago

#766 - Get the new drawing code from the branch "faster"

Pull Request - State: closed - Opened by jordibc 7 months ago

#765 - Workaround `cgi` removal in Python3.13

Pull Request - State: closed - Opened by mmore500 7 months ago - 1 comment

#764 - Import Error PyQt6

Issue - State: open - Opened by eleanorwang 8 months ago

#763 - ete4 Windows Install Error: KeyError 'HOME'

Issue - State: open - Opened by Anthony-J-G 9 months ago

#762 - status of library?

Issue - State: closed - Opened by vsoch 9 months ago - 7 comments

#761 - Update from faster

Pull Request - State: closed - Opened by jordibc 9 months ago

#760 - Faster

Pull Request - State: closed - Opened by jordibc 10 months ago

#759 - resolve_polytomy() error

Issue - State: open - Opened by silviaprietob 11 months ago - 1 comment

#758 - Updates from branch faster

Pull Request - State: closed - Opened by jordibc 11 months ago

#757 - tree.pyx: Use absolute imports.

Pull Request - State: closed - Opened by jordibc 11 months ago

#756 - Remove obsolete clustering stuff and nexml

Pull Request - State: closed - Opened by jordibc 11 months ago

#755 - Push ete4 on conda and/or pypi

Issue - State: closed - Opened by marieBvr 12 months ago - 6 comments

#754 - NCBI - taxid to names - newick tree

Issue - State: open - Opened by kullrich 12 months ago - 1 comment
Labels: feature request

#753 - Scale Bar Calculation

Issue - State: open - Opened by metehaansever about 1 year ago

#752 - AlignLinkFace malfunction in circular tree mode

Issue - State: open - Opened by dengzq1234 about 1 year ago

#751 - Ete4 #750

Pull Request - State: closed - Opened by dengzq1234 about 1 year ago - 2 comments

#750 - Allow option to ignore bad taxonomic annotation

Issue - State: closed - Opened by dengzq1234 about 1 year ago
Labels: feature request, ete4

#749 - Lift `sqlite3`'s `check_same_thread` flag to `NCBITaxa.__init__()`

Pull Request - State: closed - Opened by rtviii about 1 year ago - 1 comment

#746 - Fix relaxed phylip parsing by also allowing tab seperator

Pull Request - State: closed - Opened by cfblaeb over 1 year ago - 1 comment

#744 - Update ncbiquery.py

Pull Request - State: closed - Opened by mwittep over 1 year ago

#743 - [Update ncbiquery.py] fixing typo in NCBI url

Pull Request - State: closed - Opened by hjgwak over 1 year ago - 1 comment

#742 - fix get_distance() for topology_only=True

Pull Request - State: closed - Opened by lenacoll over 1 year ago

#740 - Bug in `get_distance()` with flag `topology_only=True` in ete3

Issue - State: closed - Opened by lenacoll over 1 year ago - 1 comment

#739 - Stable ete4 release

Issue - State: closed - Opened by Zethson over 1 year ago - 5 comments

#738 - taxid not found

Issue - State: open - Opened by WJT0925 over 1 year ago - 1 comment

#737 - tests/test_evol.py: port assertions to python3.12.

Pull Request - State: closed - Opened by emollier over 1 year ago - 3 comments

#736 - get_common_ancestor() replacement

Issue - State: closed - Opened by MohammadDara over 1 year ago - 1 comment

#735 - Issue with downloading Newick tree in ete4

Issue - State: open - Opened by vmikk over 1 year ago

#734 - Leaf names visible despite show_leaf_name=False

Issue - State: open - Opened by michaelgruenstaeudl over 1 year ago - 2 comments

#733 - Nodes label get duplicated every time show/render are called

Issue - State: closed - Opened by cerlumi over 1 year ago - 1 comment

#732 - only take leaves' species attributes as taxid

Pull Request - State: closed - Opened by dengzq1234 over 1 year ago

#731 - update GTDB module and Taxa tutorial

Pull Request - State: closed - Opened by dengzq1234 over 1 year ago - 1 comment

#730 - fix ncbi annotation using other properties

Pull Request - State: closed - Opened by dengzq1234 over 1 year ago - 1 comment

#728 - Show branch length and support by default

Pull Request - State: closed - Opened by dengzq1234 over 1 year ago - 1 comment

#727 - branch length and support dont show on leaf node

Issue - State: closed - Opened by dengzq1234 over 1 year ago - 1 comment

#726 - correct ete4_#725

Pull Request - State: closed - Opened by dengzq1234 over 1 year ago - 1 comment

#725 - Miss exception in loading NoteStyle from treeview in core

Issue - State: closed - Opened by dengzq1234 over 1 year ago

#724 - update Ete4 tutorial drawing for smartview

Pull Request - State: closed - Opened by dengzq1234 over 1 year ago - 2 comments

#723 - node options panel for root doesn't show

Issue - State: closed - Opened by dengzq1234 over 1 year ago - 1 comment

#722 - Ete4 tutorial taxa

Pull Request - State: closed - Opened by dengzq1234 almost 2 years ago - 1 comment

#721 - ultrametric malfunctions in code

Issue - State: closed - Opened by dengzq1234 almost 2 years ago - 1 comment

#720 - Ete4 gtdb

Pull Request - State: closed - Opened by dengzq1234 almost 2 years ago - 2 comments

#719 - naming of `zoom around node`

Issue - State: open - Opened by dengzq1234 almost 2 years ago

#717 - ncbiquery fuzzy not working

Issue - State: open - Opened by G-Molano-LA almost 2 years ago

#716 - Modify ladderize method to avoid recursion depth error

Pull Request - State: closed - Opened by harryrichman almost 2 years ago - 1 comment

#715 - Implement ladderize method to avoid maximum recursion depth error

Issue - State: closed - Opened by harryrichman almost 2 years ago - 1 comment

#714 - Add feature in `populate` method to sample from common tree distributions

Pull Request - State: closed - Opened by harryrichman almost 2 years ago - 3 comments

#713 - Refactor set outgroup function and update tests

Pull Request - State: closed - Opened by jhcepas almost 2 years ago - 2 comments

#712 - Fix broken str.join() in ncbiquery.generate_table()

Pull Request - State: closed - Opened by dorbarker almost 2 years ago

#711 - Online docs

Pull Request - State: closed - Opened by jhcepas almost 2 years ago

#710 - ete3 pip and requirements.txt

Issue - State: closed - Opened by NicoMaillet almost 2 years ago - 1 comment

#709 - html text formatting

Issue - State: open - Opened by haochenz96 almost 2 years ago

#707 - Inconsistent results with merged NCBI TaxIDs

Issue - State: open - Opened by lm-jkominek almost 2 years ago

#706 - Annotating leaves with NCBI taxonomy

Issue - State: closed - Opened by lm-jkominek almost 2 years ago - 1 comment

#703 - Spin 777 Slot | Login Link Alternatif Spin777Slot Online

Issue - State: closed - Opened by kang138bakso almost 2 years ago

#702 - Racecondition when downloading color definition files

Issue - State: open - Opened by sirno almost 2 years ago

#700 - Remove PyQt5 dependency

Pull Request - State: closed - Opened by sirno almost 2 years ago - 4 comments

#699 - Copy over svg colors to smartview module

Pull Request - State: closed - Opened by sirno almost 2 years ago - 1 comment

#698 - Do not try to add `treeview.Face` when it is not available

Pull Request - State: closed - Opened by sirno almost 2 years ago - 1 comment

#697 - any way to make each layer of the tree equal width?

Issue - State: closed - Opened by tommyfuu almost 2 years ago - 3 comments

#696 - Installing ete4 on Apple M1 / Upgrade to PyQt6

Issue - State: closed - Opened by sirno almost 2 years ago - 8 comments

#695 - Installing ete_toolchain without conda

Issue - State: open - Opened by sodiumnitrate about 2 years ago

#694 - nsmap error

Issue - State: open - Opened by bombelli about 2 years ago

#693 - PhyloNodes styles not working like TreeNodes

Issue - State: open - Opened by mwodring about 2 years ago

#692 - Resolve #649. Fix bug in populate() method

Pull Request - State: closed - Opened by harryrichman about 2 years ago

#691 - Add method to generate uniform random bifurcating tree

Issue - State: closed - Opened by harryrichman about 2 years ago - 1 comment

#690 - allow adding tooltip to array

Pull Request - State: closed - Opened by dengzq1234 about 2 years ago - 1 comment

#689 - Rerooting branch support value problem

Issue - State: closed - Opened by metehaansever about 2 years ago - 1 comment

#688 - Unable to invert bars in BarChartFace

Issue - State: open - Opened by Tassadaar about 2 years ago

#687 - download legend seperated from the treeview

Pull Request - State: closed - Opened by dengzq1234 about 2 years ago

#686 - Sync with ete3 latest changes and treeview fixes to work in ete4 branch

Pull Request - State: closed - Opened by jhcepas over 2 years ago

#684 - Please provide any working version of ete

Issue - State: closed - Opened by edikedik over 2 years ago - 1 comment