Ecosyste.ms: Issues

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GitHub / esteinig/scrubby issues and pull requests

#24 - Add --force option to overwrite existing output directory

Issue - State: open - Opened by ammaraziz 6 months ago
Labels: enhancement

#23 - add to biocondas

Issue - State: open - Opened by esteinig 6 months ago

#22 - Can't get scrubby installed with conda

Issue - State: closed - Opened by gokeson 10 months ago - 4 comments

#21 - Add metagenome assembly and remapping

Issue - State: open - Opened by esteinig about 1 year ago

#20 - Remove full path from JSON schema

Issue - State: open - Opened by esteinig about 1 year ago

#19 - Rename covdecov.yaml to codecov.yaml

Pull Request - State: closed - Opened by mbhall88 about 1 year ago - 1 comment

#18 - Docs and logo

Pull Request - State: closed - Opened by esteinig over 1 year ago - 1 comment

#17 - Add logo

Issue - State: closed - Opened by esteinig over 1 year ago

#16 - Test CI/CD

Pull Request - State: closed - Opened by esteinig over 1 year ago - 1 comment

#15 - Reference provision task

Issue - State: open - Opened by esteinig over 1 year ago

#14 - Update JSON schema

Issue - State: closed - Opened by esteinig over 1 year ago

#13 - Add test / build CI

Issue - State: closed - Opened by esteinig over 1 year ago

#12 - Add strobealign

Issue - State: closed - Opened by esteinig over 1 year ago
Labels: enhancement

#11 - Add individual alignment scrubbing

Issue - State: closed - Opened by esteinig over 1 year ago
Labels: enhancement

#10 - JSON summary output

Issue - State: closed - Opened by esteinig over 1 year ago
Labels: enhancement

#9 - Add trim warning in docs

Issue - State: closed - Opened by esteinig over 1 year ago
Labels: documentation

#8 - 0.2.1

Pull Request - State: closed - Opened by esteinig over 1 year ago

#7 - apple compiler config for conda

Pull Request - State: closed - Opened by esteinig over 1 year ago

#6 - 0.2.0

Pull Request - State: closed - Opened by esteinig over 1 year ago

#5 - 0.1.0

Pull Request - State: closed - Opened by esteinig over 1 year ago

#4 - Add parallel depletion / hybrid depletion

Issue - State: closed - Opened by esteinig over 1 year ago - 1 comment

#3 - Add report and read file input directly for Kraken

Issue - State: closed - Opened by esteinig over 1 year ago
Labels: enhancement

#2 - Add reverse flag to extract instead of deplete

Issue - State: closed - Opened by esteinig over 1 year ago
Labels: enhancement

#1 - `kraken2-inspect` to check taxonomic levels

Issue - State: closed - Opened by esteinig over 1 year ago
Labels: documentation