epiverse-trace/epiparameter issues and pull requests

#232 - (Re)add lint-changed-files GHA workflow

Pull Request - State: closed - Opened by joshwlambert 11 months ago
Labels: CI

#231 - Update `epi_dist` in README example

Issue - State: closed - Opened by adamkucharski 11 months ago - 1 comment
Labels: documentation

#229 - replace the `plot()` x axis with the `epi_distribution` name

Issue - State: open - Opened by avallecam 12 months ago

#227 - add the `sample_size` to the `list_distributions()` output

Issue - State: open - Opened by avallecam 12 months ago

#226 - Update subsetting in `epidist_db()`

Pull Request - State: open - Opened by joshwlambert 12 months ago - 1 comment

#225 - how to subset `multi_epidist` object from `epidist_db()` by the `prob_distribution`?

Issue - State: open - Opened by joshwlambert 12 months ago - 2 comments
Labels: enhancement

#224 - how to know which variables are available to subset by in a `multi_epidist` object?

Issue - State: open - Opened by joshwlambert 12 months ago - 2 comments
Labels: bug

#223 - Add testthat state inspector

Pull Request - State: closed - Opened by Bisaloo 12 months ago

#222 - Accept dynamic dots in `convert_params_to_summary_stats()`

Issue - State: open - Opened by Bisaloo 12 months ago

#221 - Update documentation for `accessor` S3 generics and methods

Pull Request - State: closed - Opened by Bisaloo 12 months ago - 2 comments
Labels: documentation

#220 - Add internal function to `<epidist>` attributes to load {epiparameter}

Pull Request - State: closed - Opened by joshwlambert 12 months ago
Labels: S3-class

#219 - Add option to create discretised normal distribution

Pull Request - State: closed - Opened by joshwlambert 12 months ago

#215 - Add `as.function()` method for `<epidist>`

Pull Request - State: closed - Opened by joshwlambert about 1 year ago
Labels: S3-method, S3-class

#214 - Add BibTeX example to `get_citation()`

Pull Request - State: closed - Opened by joshwlambert about 1 year ago

#213 - Move {jsonlite} to suggested dependency

Pull Request - State: closed - Opened by joshwlambert about 1 year ago

#212 - Improve storing and handling citation author information

Pull Request - State: closed - Opened by joshwlambert about 1 year ago
Labels: data management, JSON, citations

#211 - Remove double assignment in `epidist_db()` test

Pull Request - State: closed - Opened by joshwlambert about 1 year ago

#210 - Add COVID-19 parameters and add normal distribution `<epidist>`

Pull Request - State: closed - Opened by joshwlambert about 1 year ago
Labels: enhancement, S3-method, S3-class

#209 - Allow creating Poisson `<epidist>` with lambda parameter name

Pull Request - State: closed - Opened by joshwlambert about 1 year ago

#208 - Automate updating `sysdata` when database is updated or package is released

Issue - State: open - Opened by joshwlambert about 1 year ago
Labels: data management

#207 - Store and read parameter library as `sysdata`

Pull Request - State: closed - Opened by joshwlambert about 1 year ago - 1 comment
Labels: data management, pkg infrastructure

#206 - Remove data reading in `list_distributions()`

Pull Request - State: closed - Opened by joshwlambert about 1 year ago
Labels: enhancement

#205 - Remove {dplyr} from Suggests

Pull Request - State: closed - Opened by joshwlambert about 1 year ago - 2 comments

#204 - Add design principles vignette

Pull Request - State: closed - Opened by joshwlambert about 1 year ago
Labels: documentation

#203 - Reexport `cdf()` and `generate()` generics

Pull Request - State: closed - Opened by joshwlambert about 1 year ago
Labels: S3-method

#202 - Enhance, delete or leave `<multi_epidist>`

Issue - State: open - Opened by joshwlambert about 1 year ago
Labels: discussion

#201 - Vectorised filtering for list of `<epidist>`

Issue - State: open - Opened by joshwlambert about 1 year ago

#200 - Improve method of reading parameters with `epidist_db()`

Issue - State: closed - Opened by joshwlambert about 1 year ago - 1 comment

#199 - Treat bundled database as any other `multi_epidist` object

Issue - State: closed - Opened by Bisaloo about 1 year ago - 1 comment

#198 - Pre-build database?

Issue - State: closed - Opened by TimTaylor about 1 year ago

#197 - Major refactor of {epiparameter}

Pull Request - State: closed - Opened by joshwlambert about 1 year ago - 3 comments

#196 - Mean method for epidists appears broken

Issue - State: closed - Opened by pratikunterwegs about 1 year ago - 1 comment

#195 - Make clear in documentation how to subset parameter library by authors

Issue - State: open - Opened by joshwlambert about 1 year ago
Labels: documentation

#194 - Update epidemiological parameter library

Pull Request - State: closed - Opened by joshwlambert about 1 year ago
Labels: data management, JSON

#193 - Team authors requires hyphen separation

Issue - State: closed - Opened by joshwlambert about 1 year ago

#192 - Restore normal vdiffr workflow

Pull Request - State: closed - Opened by Bisaloo about 1 year ago - 1 comment

#191 - add `epidist_db()` argument update to Changelog

Issue - State: open - Opened by avallecam about 1 year ago

#190 - Test PR to check updated parameter (JSON) library, JSON schema and JSON-validation workflow

Pull Request - State: closed - Opened by joshwlambert about 1 year ago
Labels: JSON

#189 - `mean()` output discrepancy

Issue - State: open - Opened by pratikunterwegs about 1 year ago

#188 - Fix if_not_else_linter lint

Pull Request - State: closed - Opened by Bisaloo about 1 year ago - 1 comment

#187 - Add `mean()` method for `<epidist>`

Pull Request - State: closed - Opened by joshwlambert about 1 year ago - 2 comments
Labels: S3-method, S3-class

#186 - Miscellaneous package infrastructure updates

Pull Request - State: closed - Opened by joshwlambert about 1 year ago
Labels: pkg infrastructure

#185 - Add NEWS.md

Pull Request - State: closed - Opened by joshwlambert about 1 year ago
Labels: pkg infrastructure

#184 - Add workflow to update citation.cff

Pull Request - State: closed - Opened by joshwlambert about 1 year ago - 1 comment
Labels: pkg infrastructure

#183 - Add `setup-options.R` to avoid partial matching

Pull Request - State: closed - Opened by joshwlambert about 1 year ago
Labels: pkg infrastructure

#182 - Add spell check to package

Pull Request - State: closed - Opened by joshwlambert about 1 year ago
Labels: pkg infrastructure

#181 - Reduce number of checking functions

Pull Request - State: closed - Opened by joshwlambert about 1 year ago

#180 - Fix {vdiffr} v1.0.5 install in R CMD check workflow

Pull Request - State: closed - Opened by joshwlambert about 1 year ago
Labels: bug

#179 - Add package reviewers

Pull Request - State: closed - Opened by joshwlambert about 1 year ago
Labels: documentation

#178 - Update package style and documentation

Pull Request - State: closed - Opened by joshwlambert about 1 year ago
Labels: documentation

#177 - Update vignettes

Pull Request - State: closed - Opened by joshwlambert about 1 year ago

#176 - Remove/reduce mentioning object classes in README

Issue - State: open - Opened by joshwlambert about 1 year ago

#175 - Update `<epidist>` utility functions

Pull Request - State: closed - Opened by joshwlambert about 1 year ago

#174 - Update `create_prob_dist()`

Pull Request - State: closed - Opened by joshwlambert about 1 year ago

#173 - Mid/long term development plans for {epiparameter}

Issue - State: open - Opened by joshwlambert about 1 year ago

#172 - Update `extract_param()`

Pull Request - State: closed - Opened by joshwlambert about 1 year ago
Labels: enhancement

#171 - Update functionality around `<epiparam>`

Pull Request - State: closed - Opened by joshwlambert about 1 year ago
Labels: enhancement, S3-class

#170 - Update workflows & add pkg citation

Pull Request - State: closed - Opened by joshwlambert over 1 year ago
Labels: pkg infrastructure

#169 - Remove covr from Suggests

Pull Request - State: closed - Opened by joshwlambert over 1 year ago

#168 - Use `<bibentry>` for handling citations

Pull Request - State: closed - Opened by joshwlambert over 1 year ago - 2 comments
Labels: enhancement, citations

#167 - Check if finite/infinite values can be checked by JSON validation

Issue - State: open - Opened by joshwlambert over 1 year ago

#166 - Make conversion functions S3 generics

Issue - State: open - Opened by joshwlambert over 1 year ago
Labels: enhancement, S3-method

#165 - Simplify parameter conversion

Pull Request - State: closed - Opened by joshwlambert over 1 year ago
Labels: enhancement

#164 - Reduce NAMESPACE of conversion functions

Issue - State: closed - Opened by joshwlambert over 1 year ago - 2 comments
Labels: enhancement

#163 - Improve user control on accessing parameters using `epidist_db()`

Issue - State: closed - Opened by joshwlambert over 1 year ago
Labels: enhancement, discussion

#162 - Fixes bug in `as_epiparam()`

Pull Request - State: closed - Opened by joshwlambert over 1 year ago - 1 comment

#161 - `as_epiparam()` errors with unparameterised entries

Issue - State: closed - Opened by joshwlambert over 1 year ago - 1 comment
Labels: bug

#160 - Update `epidist_db()` to give more fine-grained control

Pull Request - State: closed - Opened by joshwlambert over 1 year ago - 1 comment
Labels: enhancement

#159 - Change `parameters()` to `get_parameters()`

Pull Request - State: closed - Opened by joshwlambert over 1 year ago
Labels: enhancement

#158 - Change `parameters()` accessor to `get_parameters()`

Issue - State: closed - Opened by joshwlambert over 1 year ago
Labels: enhancement

#157 - Parameter extraction assuming normal distribution

Issue - State: closed - Opened by adamkucharski over 1 year ago

#156 - Make citation field in `<epidist>` objects be stored as `<bibentry>`

Issue - State: closed - Opened by joshwlambert over 1 year ago

#155 - Type checking in JSON validation rather than `new_epiparam()`

Issue - State: open - Opened by joshwlambert over 1 year ago

#154 - Authors with 2 family names not formatted correctly by `create_epidist_citation()`

Issue - State: closed - Opened by joshwlambert over 1 year ago - 2 comments

#153 - Relative error in extraction bias

Issue - State: open - Opened by joshwlambert over 1 year ago

#152 - Document user-facing changes in NEWS.md

Issue - State: closed - Opened by jamesmbaazam over 1 year ago - 1 comment

#151 - Full package review for v0.1.0 release

Pull Request - State: closed - Opened by joshwlambert over 1 year ago - 10 comments
Labels: Pkg review

#150 - Relax `<epidist>` and stricter `<epiparam>` classes

Pull Request - State: closed - Opened by joshwlambert over 1 year ago
Labels: enhancement, S3-class

#149 - Updated library of epidemiological parameters

Pull Request - State: closed - Opened by joshwlambert over 1 year ago
Labels: data management, v0.1

#148 - Allow unparameterised `<epidist>` objects

Issue - State: closed - Opened by joshwlambert over 1 year ago
Labels: enhancement, v0.1

#147 - Fix `bind_epiparam()` when `<epiparam>` has been subset but not downgraded

Issue - State: closed - Opened by joshwlambert over 1 year ago - 2 comments
Labels: enhancement, v0.1

#146 - Update parameter database

Issue - State: closed - Opened by joshwlambert over 1 year ago
Labels: enhancement, data management, v0.1

#145 - Handle normal distributions in `<epidist>`

Issue - State: open - Opened by joshwlambert over 1 year ago
Labels: consideration, discussion

#144 - Updates to vignettes and pkgdown

Pull Request - State: closed - Opened by joshwlambert over 1 year ago - 4 comments
Labels: documentation, enhancement, website

#143 - Convert references file from Bibtex to CSL-JSON

Issue - State: closed - Opened by joshwlambert over 1 year ago
Labels: documentation, citations

#142 - Adds vignette on parameter extraction bias

Pull Request - State: closed - Opened by joshwlambert over 1 year ago
Labels: documentation

#141 - Add lower bound input checking to `extract_param()`

Pull Request - State: closed - Opened by joshwlambert over 1 year ago
Labels: enhancement

#140 - `link-citations: true` in vignettes

Issue - State: closed - Opened by joshwlambert over 1 year ago

#139 - Add sections to pkgdown reference index

Issue - State: closed - Opened by Bisaloo over 1 year ago - 1 comment

#138 - Tidying and fixing package documentation

Pull Request - State: closed - Opened by joshwlambert over 1 year ago
Labels: documentation

#137 - Expands parameter conversion functionality and adds vignette

Pull Request - State: closed - Opened by joshwlambert over 1 year ago - 2 comments
Labels: documentation, enhancement

#136 - Added new introductory vignette

Pull Request - State: closed - Opened by joshwlambert over 1 year ago - 1 comment
Labels: documentation

#135 - Adds lifecycle badge to README

Pull Request - State: closed - Opened by joshwlambert over 1 year ago
Labels: documentation

#134 - Inconsistent parameter names when printing

Issue - State: closed - Opened by joshwlambert over 1 year ago - 1 comment

#133 - add one space between words

Pull Request - State: closed - Opened by avallecam over 1 year ago - 2 comments

#132 - Removed original vignette

Pull Request - State: closed - Opened by joshwlambert over 1 year ago
Labels: documentation

#131 - Add examples of using distribution functions to epiparameter vignette

Issue - State: open - Opened by joshwlambert over 1 year ago

#130 - Add citation functions

Pull Request - State: closed - Opened by joshwlambert over 1 year ago - 3 comments
Labels: enhancement, S3-method

#129 - JSON validation workflow generates JSON files

Pull Request - State: closed - Opened by joshwlambert over 1 year ago - 2 comments
Labels: CI, JSON

#128 - Added `discretise()` and `parameters()` methods to `<epidist>`

Pull Request - State: closed - Opened by joshwlambert over 1 year ago
Labels: enhancement

GitHub / epiverse-trace/epiparameter issues and pull requests