Ecosyste.ms: Issues

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GitHub / epitools/epitools issues and pull requests

#40 - Remove 'z' axis from the projected image

Pull Request - State: closed - Opened by p-j-smith over 1 year ago

#39 - Projected images should be 2D+t

Issue - State: closed - Opened by p-j-smith over 1 year ago

#38 - Fix issue with thread continually running

Pull Request - State: closed - Opened by p-j-smith over 1 year ago

#37 - Segmentation step

Issue - State: closed - Opened by p-j-smith over 1 year ago - 1 comment
Labels: question

#36 - Add napari-hub

Issue - State: closed - Opened by paddyroddy over 1 year ago
Labels: feature

#35 - Add to PyPI

Issue - State: closed - Opened by paddyroddy over 1 year ago - 1 comment
Labels: feature

#34 - Move to a `pyproject.toml` structure

Pull Request - State: closed - Opened by paddyroddy over 1 year ago - 1 comment

#33 - Remove `setup.cfg` in favour of `pyproject.toml`

Issue - State: closed - Opened by paddyroddy over 1 year ago

#32 - Bump version number of add-to-project action

Pull Request - State: closed - Opened by paddyroddy over 1 year ago

#31 - Find better way to handle napari's thread_worker in tests

Issue - State: closed - Opened by p-j-smith over 1 year ago

#30 - Fix failing CI

Pull Request - State: closed - Opened by p-j-smith over 1 year ago - 1 comment

#29 - CI is broken

Issue - State: closed - Opened by p-j-smith over 1 year ago - 4 comments

#28 - Improve linting and run on all files

Pull Request - State: closed - Opened by paddyroddy over 1 year ago - 8 comments

#27 - Incorporate `arboretum`?

Issue - State: closed - Opened by paddyroddy over 1 year ago - 1 comment
Labels: enhancement

#26 - Extract cell statistics

Issue - State: closed - Opened by paddyroddy over 1 year ago
Labels: feature

#25 - Let PI know that correcting tracking isn't really possible

Issue - State: closed - Opened by paddyroddy over 1 year ago - 1 comment
Labels: wontfix

#24 - Improve correcting segmentation

Issue - State: closed - Opened by paddyroddy over 1 year ago - 1 comment
Labels: feature

#23 - Set up tracking step

Issue - State: closed - Opened by paddyroddy over 1 year ago - 1 comment
Labels: feature

#22 - Fix parameter naming ambiguity

Issue - State: closed - Opened by paddyroddy over 1 year ago - 1 comment
Labels: documentation

#21 - Update project board CI version number

Issue - State: closed - Opened by paddyroddy over 1 year ago
Labels: bug

#20 - Discussion with Dan about the code

Issue - State: closed - Opened by paddyroddy over 1 year ago
Labels: help wanted

#19 - Fix linting problems

Issue - State: closed - Opened by paddyroddy over 1 year ago - 1 comment
Labels: bug

#18 - Add project board update CI

Pull Request - State: closed - Opened by paddyroddy over 1 year ago

#17 - Remove composite widget

Pull Request - State: closed - Opened by drmatthews almost 2 years ago - 1 comment
Labels: enhancement

#16 - Do we want the combination plugin and/or the individual ones?

Issue - State: closed - Opened by paddyroddy almost 2 years ago
Labels: question

#15 - Segmentation widget to detect the projected image automatically

Issue - State: closed - Opened by paddyroddy almost 2 years ago
Labels: feature

#14 - Integration with napari-assistant

Issue - State: open - Opened by drmatthews almost 2 years ago
Labels: feature

#13 - Composite widget

Pull Request - State: closed - Opened by drmatthews about 2 years ago - 3 comments

#12 - Display and export measurement results

Issue - State: closed - Opened by drmatthews about 2 years ago - 1 comment
Labels: feature

#11 - Handle multi time point data

Issue - State: closed - Opened by drmatthews about 2 years ago
Labels: enhancement

#10 - Skeleton magicgui direct

Pull Request - State: closed - Opened by drmatthews about 2 years ago - 2 comments

#9 - Projection

Pull Request - State: closed - Opened by drmatthews about 2 years ago

#8 - Launch segmentation code from `napari` widget

Issue - State: closed - Opened by drmatthews about 2 years ago - 1 comment

#7 - Create a widget that can be launched from main `napari` window

Issue - State: closed - Opened by drmatthews about 2 years ago - 1 comment

#6 - Port matlab code to run segmentations

Issue - State: closed - Opened by drmatthews about 2 years ago - 1 comment

#5 - Port epitools matlab segmentation code

Issue - State: closed - Opened by drmatthews about 2 years ago - 1 comment
Labels: feature

#4 - The ability to execute the projection code from the widget

Issue - State: closed - Opened by drmatthews about 2 years ago - 1 comment

#3 - Creation of widget that can be launched from the main `napari` window

Issue - State: closed - Opened by drmatthews about 2 years ago - 2 comments

#1 - Port epitools matlab projection code

Issue - State: closed - Opened by drmatthews about 2 years ago
Labels: feature