Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / epitools/epitools issues and pull requests

#141 - Fix 2 channel projection for stacks

Issue - State: open - Opened by giuliapaci 3 months ago
Labels: bug

#140 - Connecting to napari-tyssue

Issue - State: closed - Opened by kephale about 1 year ago - 1 comment

#139 - Monitor epitools tag on image.sc forum

Issue - State: open - Opened by Pablo1990 about 1 year ago
Labels: enhancement

#137 - Update issue templates

Pull Request - State: closed - Opened by Pablo1990 about 1 year ago

#136 - Adding citation file

Pull Request - State: closed - Opened by Pablo1990 about 1 year ago - 2 comments

#135 - Add citation of software

Issue - State: closed - Opened by Pablo1990 about 1 year ago
Labels: documentation

#134 - Increase range of threshold sigma parameter

Pull Request - State: closed - Opened by Pablo1990 about 1 year ago

#133 - Make the other epitools archived (read-only)

Issue - State: closed - Opened by Pablo1990 about 1 year ago - 1 comment
Labels: bug, enhancement

#132 - segment in 3D images

Issue - State: open - Opened by Pablo1990 about 1 year ago
Labels: enhancement

#131 - Increase range of threshold sigma parameter

Issue - State: closed - Opened by giuliapaci about 1 year ago - 1 comment
Labels: bug, enhancement

#130 - Edit segmentation widget to make seeds display optional

Issue - State: open - Opened by giuliapaci about 1 year ago
Labels: bug, enhancement

#129 - Boundary/border cells in cell_statistics

Issue - State: open - Opened by Pablo1990 about 1 year ago
Labels: enhancement

#128 - Possible 'save' file via partseg error saving labels

Issue - State: open - Opened by Pablo1990 about 1 year ago
Labels: bug

#127 - Add 'btrack' to dependecies

Issue - State: open - Opened by Pablo1990 about 1 year ago
Labels: enhancement

#125 - Possible 'chardet' package missing

Issue - State: open - Opened by Pablo1990 about 1 year ago
Labels: question

#124 - E-mail in pypi from authors is wrong

Issue - State: open - Opened by Pablo1990 about 1 year ago
Labels: bug

#123 - 94 review files in napari folder

Pull Request - State: open - Opened by Pablo1990 about 1 year ago

#122 - 121 increase test coverage

Pull Request - State: open - Opened by Pablo1990 about 1 year ago - 4 comments
Labels: enhancement

#121 - Increase test coverage

Issue - State: open - Opened by Pablo1990 about 1 year ago
Labels: enhancement

#120 - Add dependency as requested

Pull Request - State: closed - Opened by Pablo1990 about 1 year ago

#119 - Update dependencies

Issue - State: closed - Opened by goanpeca about 1 year ago
Labels: enhancement

#118 - Fixed previous fixed error for tests

Pull Request - State: closed - Opened by Pablo1990 about 1 year ago - 4 comments

#117 - Add new widget for 2ch proj

Pull Request - State: closed - Opened by giuliapaci about 1 year ago
Labels: enhancement

#116 - Project second channel based on reference channel

Issue - State: closed - Opened by giuliapaci about 1 year ago
Labels: enhancement

#115 - Update README.md

Pull Request - State: closed - Opened by Pablo1990 about 1 year ago - 1 comment

#114 - 113 add updated information to pypi

Pull Request - State: closed - Opened by Pablo1990 over 1 year ago

#113 - Add updated information to pypi

Issue - State: closed - Opened by Pablo1990 over 1 year ago
Labels: documentation

#112 - Regionprops with voxel size is not working

Issue - State: open - Opened by Pablo1990 over 1 year ago
Labels: bug

#111 - Add 'napari_pyclesperanto_assistant' as a dependency

Issue - State: open - Opened by Pablo1990 over 1 year ago - 1 comment
Labels: enhancement

#110 - Improved description of project

Pull Request - State: closed - Opened by Pablo1990 over 1 year ago

#109 - Review documentation from Github

Issue - State: open - Opened by Pablo1990 over 1 year ago
Labels: documentation

#108 - Add video tutorials to documentation

Issue - State: open - Opened by Pablo1990 over 1 year ago - 1 comment
Labels: documentation

#107 - Improve description displayed on Pypi and Napari-hub

Issue - State: closed - Opened by Pablo1990 over 1 year ago
Labels: documentation

#106 - Added and removed terms

Pull Request - State: closed - Opened by Pablo1990 over 1 year ago - 1 comment

#105 - Add relevant categories for napari-hub

Issue - State: closed - Opened by Pablo1990 over 1 year ago
Labels: documentation

#104 - Fix datatype numpy test issue and widget

Pull Request - State: closed - Opened by giuliapaci over 1 year ago
Labels: bug

#103 - Add neighbour ids to cell statistics

Pull Request - State: closed - Opened by giuliapaci over 1 year ago
Labels: enhancement

#102 - Add neighbour cell ids to the calculate statistics output

Issue - State: closed - Opened by giuliapaci over 1 year ago
Labels: enhancement

#101 - Fix `napari` installation instructions and loading sample dataset

Pull Request - State: closed - Opened by paddyroddy over 1 year ago - 1 comment
Labels: bug

#100 - Restore regression tests with updated regression data

Issue - State: open - Opened by paddyroddy over 1 year ago - 1 comment
Labels: bug

#99 - Once #93 is merged, do a release and communicate with researchers

Issue - State: closed - Opened by paddyroddy over 1 year ago
Labels: help wanted, question

#98 - Determine why other `regionprops` properties don't play nicely with the cell statistics

Issue - State: open - Opened by paddyroddy over 1 year ago
Labels: bug, enhancement

#97 - Add more colour maps

Issue - State: open - Opened by paddyroddy over 1 year ago
Labels: bug, documentation, enhancement

#96 - Restore hover over tooltips

Issue - State: open - Opened by paddyroddy over 1 year ago
Labels: bug, documentation, feature

#95 - Pin min `btrack` version

Pull Request - State: closed - Opened by paddyroddy over 1 year ago

#94 - Review files in `.napari` folder

Issue - State: open - Opened by alessandrofelder over 1 year ago - 1 comment
Labels: documentation, enhancement

#93 - Add everything from `regionprops`

Pull Request - State: closed - Opened by paddyroddy over 1 year ago
Labels: enhancement

#92 - Add example config for napari hub

Pull Request - State: closed - Opened by paddyroddy over 1 year ago
Labels: documentation

#91 - Add recommended `napari` workflow dependencies

Pull Request - State: closed - Opened by paddyroddy over 1 year ago

#90 - regionprops

Issue - State: closed - Opened by paddyroddy over 1 year ago

#89 - Sovle divide issue

Issue - State: closed - Opened by paddyroddy over 1 year ago

#88 - Add colour bar/legend to cell statistics

Issue - State: open - Opened by paddyroddy over 1 year ago
Labels: feature

#87 - Add `btrack` and `napari-segment...` as dependencies

Issue - State: closed - Opened by paddyroddy over 1 year ago

#86 - Add videos to docs

Pull Request - State: closed - Opened by paddyroddy over 1 year ago

#85 - Change videos in docs to MP4

Pull Request - State: closed - Opened by paddyroddy over 1 year ago
Labels: bug

#84 - Update .readthedocs.yml

Pull Request - State: closed - Opened by paddyroddy over 1 year ago

#83 - Fix docs warnings

Issue - State: closed - Opened by paddyroddy over 1 year ago - 1 comment

#82 - Add docs badge

Issue - State: closed - Opened by paddyroddy over 1 year ago - 1 comment

#81 - Add initial docs for the napari plugin and Python api

Pull Request - State: closed - Opened by p-j-smith over 1 year ago - 3 comments

#80 - Fix pixel spacing used when calculating cell stats

Pull Request - State: closed - Opened by p-j-smith over 1 year ago

#79 - Allow small drop in `coveralls` %

Issue - State: closed - Opened by paddyroddy over 1 year ago - 2 comments

#78 - Improve look on PyPI

Pull Request - State: closed - Opened by paddyroddy over 1 year ago - 1 comment

#77 - Drop TestPyPI

Pull Request - State: closed - Opened by paddyroddy over 1 year ago

#76 - Add `python=3.11` support

Issue - State: open - Opened by paddyroddy over 1 year ago - 1 comment
Labels: enhancement

#75 - Drop 3.8 support

Pull Request - State: closed - Opened by paddyroddy over 1 year ago

#74 - Fix matrix typo

Pull Request - State: closed - Opened by paddyroddy over 1 year ago
Labels: bug

#73 - Simplify GitHub Actions

Pull Request - State: closed - Opened by paddyroddy over 1 year ago - 1 comment

#72 - Use `lcov` format instead

Pull Request - State: closed - Opened by paddyroddy over 1 year ago - 8 comments

#71 - Improve test coverage

Pull Request - State: closed - Opened by p-j-smith over 1 year ago - 2 comments

#70 - Fix badges

Pull Request - State: closed - Opened by paddyroddy over 1 year ago - 1 comment

#69 - Switch coverage to `coveralls`

Pull Request - State: closed - Opened by paddyroddy over 1 year ago - 1 comment

#68 - Replace Slider widgest with SpinBoxes

Pull Request - State: closed - Opened by p-j-smith over 1 year ago - 1 comment

#67 - Apply pixel scaling to images in the viewer and add an Image/Labels writer

Pull Request - State: closed - Opened by p-j-smith over 1 year ago - 5 comments

#66 - Add coverage

Issue - State: closed - Opened by paddyroddy over 1 year ago - 1 comment

#65 - Change paremeters to `spinbox` rather than `slider`

Issue - State: closed - Opened by paddyroddy over 1 year ago

#63 - Add tests for `napari` plugin

Issue - State: closed - Opened by paddyroddy over 1 year ago - 1 comment

#62 - Add tests for `epitools` package

Issue - State: closed - Opened by paddyroddy over 1 year ago

#61 - Add documentation for the `napari` plugin

Issue - State: closed - Opened by paddyroddy over 1 year ago - 1 comment
Labels: documentation

#60 - Add documentation for `epitools` package

Issue - State: closed - Opened by paddyroddy over 1 year ago
Labels: documentation

#58 - Read pixel spacing from tif files and use when calculating regionprops

Pull Request - State: closed - Opened by p-j-smith over 1 year ago

#57 - Move widget creation into a sub-package

Pull Request - State: closed - Opened by p-j-smith over 1 year ago

#56 - Implement custom `isort` sections for napari

Pull Request - State: closed - Opened by paddyroddy over 1 year ago - 1 comment

#55 - Make the '_widgets' module into a sub-package

Issue - State: closed - Opened by p-j-smith over 1 year ago

#54 - Update installation instructions

Pull Request - State: closed - Opened by p-j-smith over 1 year ago

#53 - Colour 'Labels' layers by cell statistics

Pull Request - State: closed - Opened by p-j-smith over 1 year ago

#52 - Units for the cell statistics

Issue - State: closed - Opened by p-j-smith over 1 year ago - 1 comment

#51 - Add option to colour the segmentation by cell statistics

Issue - State: closed - Opened by p-j-smith over 1 year ago

#50 - Add option to export graphs created by the Cell Statistics widget

Issue - State: closed - Opened by p-j-smith over 1 year ago - 1 comment
Labels: wontfix

#49 - Add logging

Pull Request - State: closed - Opened by p-j-smith over 1 year ago

#48 - Use more appropraite sample data

Pull Request - State: closed - Opened by p-j-smith over 1 year ago

#47 - Delete 181210_DM_CellMOr_subsub_reg_decon-1_cropped.tif

Pull Request - State: closed - Opened by Pablo1990 over 1 year ago - 1 comment

#46 - Set up logging

Issue - State: closed - Opened by p-j-smith over 1 year ago

#45 - Automatically select new Image layers

Pull Request - State: closed - Opened by p-j-smith over 1 year ago

#44 - Add initial widget for calculating cell statistics

Pull Request - State: closed - Opened by p-j-smith over 1 year ago - 1 comment

#43 - Ensure labels of segmented image start from 1

Pull Request - State: closed - Opened by p-j-smith over 1 year ago

#42 - Segmentation labels start at 0

Issue - State: closed - Opened by p-j-smith over 1 year ago

#41 - Update default widget values

Pull Request - State: closed - Opened by p-j-smith over 1 year ago - 1 comment